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55 protocols using jsm 6380

1

Fungal Biomass Characterization and Cr(VI) Adsorption

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Information about the surface morphology and topography of the used fungal biomass and its extracellular melanin particles, as well as their surface chemical composition, were established [44 ] by scanning electron microscopy (SEM), and energy dispersive x-ray (EDX) on JSM6380, JEOL, Japan. The samples were covered with a thin layer of gold to avoid charging during imaging.
The basic functional groups, and surface chemistry of the fungal biomass, and melanin were scrutinized by Fourier-transform infrared spectroscopy (FT-IR), in which the spectral analysis was run at Thermo-Fisher Nicolet IS10, USA Spectrophotometer at a resolution of four cm−1 in the wavenumber ranges of 500–4000 cm−1 in transmission approach to identify the influence of the functional groups in the adsorption of Cr(VI) ions on the surface of fungi and melanin. In this route, 20 mL of 1000 mg/L of Cr(VI) solution was mixed with 0.1 g of each solid melanin and fungi biomass at 45 °C. Centrifugation at 200 rpm of the solution was achieved after incubation for 24 h to separate the melanin particles and powdered fungi. The separated pellets were washed with ethanol and dried in air. The solid melanin and fungi biomass were immersed in distilled water, separated following the matching aforementioned conditions, and used as a control.
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2

Specimen Preparation for Electron Microscopy

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After fixation in 70 % ethanol, plants were transferred to 80 % ethanol for 15 min, 96 % ethanol for 15 min, ethanol:acetone (1:1) for 1 h and then acetone 3 times for 30 min. Imaging was carried out using two electron microscopes, CamScan 4S (CamScan, Cambridge, UK) and JSM-6380 (JEOL, Tokyo, Japan), with an acceleration voltage of 15–20 kV. SEM images were treated and colored using Adobe Photoshop.
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3

Scydosella musawasensis from Colombia

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Adults of Scydosellamusawasensis Hall, 1999 were collected in Chicaque National Park, Colombia, 10 km west of Bogotá, on 8 February 2015 (coordinates 4.619, -74.312), 2200 m above sea level, on the fungus Steccherinum sp. (Meruliaceae), 85 specimens. The material was fixed in FAA

(formaldehyde—alcohol—acetic acid)

and preserved in 70% ethanol. It was subsequently examined under a Jeol JSM-6380

scanning electron microscope

(SEM)
after drying of the specimens at the critical point (Hitachi HCP-2) and sputter coating with gold (Giko JSM-6380). The measurements were made using the program Meazure (C Thing Software) from digital micrographs obtained under SEM.
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4

Microstructural Characterization of SEBAMed

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Optical microscopy and scanning electron microscopy (SEM) of SEBAMed samples prepared by grinding and polishing- diamond abrasive disc with water used as coolant in the grinding process and polished with silicon carbide and 0.3 μm Al2O3 suspension. Optical and SEM samples were etched in 2.5% HNO3 + 5% HCl + 92.5% ethanol reagent. Secondary electron image SEM was carried on JEOL JSM-6380 (Tokyo, Japan) at 15 kV. Phase analysis was conducted using X-Ray Diffraction (XRD) (Panalytical B.V., Almelo, The Netherlands) and transmission electron microscopy (TEM) (PHILPLIES CM200 and JEOL 2000 FX, Tokyo, Japan). The characteristic CuKα radiation (λ = 1.5412 Å) in the 2θ range from 20 to 100 degrees having voltage 40 keV and current 40 mA was used. TEM samples were prepared using the following procedures: thin samples sections were manually ground to 0.06 ± 0.02 mm in thickness with silicon carbide paper and then the thin foils for TEM were electro polish using Automatic Twin-Jet Electropolisher Model 110 (Yokohama, Japan) at 25 V in a solution bath consisting of 12% perchloric acid, 15% glacial acetic acid and 75% ethanol reagent.
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5

Stomatal Ultrastructural Analysis by SEM

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Stomatal observations were performed using a scanning electron microscope (SEM) (JSM-6380, JEOL, Tokyo, Japan) operating at 15–25 kV. Briefly, the excised leaves were fixed in 2.5% glutaraldehyde at 4°C for overnight. Staining was done in 1.0% osmium tetroxide solution for 2 h at 4°C. After staining, the samples were dehydrated in graded series of ethanol and final wash with 80% acetone. After fixation and staining, samples were washed with 0.1 M phosphate-buffered saline (PBS, pH 7.0). Finally, the samples were dried and gold coated before the micrograph observation.
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6

Seed Ornamentation Analysis of Diverse Fruits

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Several fruits of all species were taken from the herbaria vouchers deposited in herbaria with the permission of the curators. Seed ornamentation was examined using a scanning electron microscope (SEM) JSM–6380 (JEOL Ltd., Japan) at 15 kV after sputter coating with gold-palladium in the laboratory of Electron Microscopy at the Lomonosov Moscow State University. To restore the soft pericarp tissue prior to scanning electron microscopy, the fruits were dehydrated in aqueous ethyl alcohol solutions of increasing concentration, followed by alcohol-acetone solutions and pure acetone. The seeds did not require a complicated treatment prior to SEM due to the presence of the PageBreakhard seed coat. The cross-sections of the fruits and seeds were prepared using a rotary microtome Microm HM 355S (Thermo Fisher Scientific, USA). Before sectioning, the seeds were soaked in water:alcohol:glycerin (1:1:1) solution, dehydrated in an ethanol dilution series and embedded in Technovit 7100 resin (Heraeus Kulzer, Germany). The cross-sections were observed using a Nikon Eclipse Ci microscope and photographed with a Nikon DS-Vi1 camera (Nikon Corporation, Japan) at the Department of Higher Plants (Moscow State University).
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7

Characterizing Porous Structure Properties

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The static properties of the porous structures were measured using a static test machine (Shimadzu UH, 1000 kN load cell) by applying a constant deformation rate of 1.0 mm/min. Three specimens were tested for each variation in the porous structure. Uniaxial engineering compression stress–strain curves were obtained, and the mean and standard deviation of each of the five compressive properties were determined. During compressive testing, a digital camera was used to obtain in situ images. Scanning electron microscopy (SEM) secondary electron imaging was carried out on a JEOL JSM-6380 (Tokyo, Japan) at 15 kV for fracture surface observations.
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8

Carpological Analysis of Corispermoideae

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The morphoanatomical data for Agriophyllum, Anthochlamys and Corispermum (Corispermoideae) were obtained from previous detailed studies [44 (link), 83 (link)]. Carpological features of Baolia and Acroglochin were examined by preparing cross-sections using a Microm HM 355 S rotary microtome (Thermo Fisher Scientific, USA). Prior to sectioning, the material was immersed in water: alcohol: glycerin (1: 1: 1) solution, dehydrated in a series of ethanol dilutions and embedded in Technovit 7100 resin (Heraeus Kulzer, Germany). The cross-sections were examined using a Nikon Eclipse Ci microscope and captured with a Nikon DS-Vi1 camera (Nikon Corporation, Japan). The fruit and seed surface was examined using a scanning electron microscope (SEM) JSM-6380 (JEOL Ltd., Japan) at 15 kV after sputter-coating with gold-palladium using an EIKO IB-3 Ion Coater (EIKO Engineering Ltd., Japan) at the Electron Microscopy laboratory, M.V. Lomonosov Moscow State University. Before SEM imaging, Baolia fruit underwent dehydration in aqueous ethyl alcohol solutions of increasing concentrations, followed by alcohol-acetone solutions, and pure acetone. Ten carpological characters and their states were coded in the present study for Acroglochin, Baolia, three Corispermeae (Corispermum, Anthochlamys, and Agriophyllum) and Chenopodioideae (see Additional file 2: Table S7).
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9

Tensile and Flexural Testing of 3D Printed Samples

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Filament and 3D
printed samples are tensile tested using Zwick Roell Z020, USA, with
a 20 kN load cell. The total length of the filament is 176 mm, with
a 76 mm distance between the grips. The test is carried out by maintaining
a constant 5 mm/min loading rate. An extensometer (gauge length 50
mm) is used to measure the strain. The printed samples are tested
according to ASTM D638-14, at similar cross-head displacement using
a 25 mm extensometer gauge length. An initial load elongation of 0.1
MPa is recorded using an extensometer. For flexural testing of prints
(127 × 12.7 × 3.2 mm), a three-point bending configuration
(ASTM D790-17) is adopted with a preload of 0.1 MPa, loading rate
of 1.37 mm/min with a span length to depth ratio of 16:1. Flexural
modulus is computed using where, d: thickness, b: width, m: slope, and L: span length.
Flexural stress
fm) is calculated
using
A minimum of five samples
are tested for all the experimental investigations,
and the average values are reported. Micrographs of as-fabricated
freeze-fractured and post-test filaments and prints are taken by gold
sputter covering (JFC-1600) using JSM 6380LA JEOL, Japan.
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10

Gelatin Nanofiber Morphology Analysis

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The surface morphology of crosslinked and uncrosslinked gelatin samples was observed using a scanning electron microscope (SEM; JSM-6380; JEOL, Japan). Crosslinked samples were immersed in purified water and lyophilized to observe the fibrous structure of gelatin. Dry samples of gelatin were observed with 11 kV accelerating voltage after sputter coating with platinum. The diameters of nanofiber strands were determined using an image measurement software (I-solution Lite, IMT i-solution Inc., Korea).
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