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Dm4000b microscope

Manufactured by Leica
Sourced in Germany, United States, United Kingdom, China, Canada, France

The DM4000B is a high-performance microscope from Leica designed for advanced laboratory applications. It features a sturdy, ergonomic design and delivers reliable, precise imaging capabilities for a variety of scientific research and analysis tasks.

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337 protocols using dm4000b microscope

1

Skin Histopathology and Immunohistochemistry

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Cryosections were prepared as 8 mm skin cross-sections and hematoxylin and eosin (H&E) stained. Digital images of the skin histopathology were acquired with a Leica DM4000B microscope (Leica Microsystems, Buffalo Grove, IL). Analysis of epidermal thickness was conducted with ImageJ (NIH). Immunohistochemistry sections were fixed with 4% paraformaldehyde and stained essentially as previously described [49 (link)]. The following bound primary antibodies—IL-22Rα (clone 305405, concentration used: 1 in 400), Invitrogen; KRT1 (ab93652, concentration used: 1 in 250), Abcam; and Ki67 (ab15580, concentration used: 1 in 250), Abcam—were detected by incubation with Alexa Fluo 488 conjugated secondary antibody (Invitrogen, concentration used: 1 in 500), followed by counterstaining with DAPI (Vector Labs, Burlingame, CA), and visualized under fluorescence using a Leica DM4000B microscope.
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2

Histomorphologic Liver Assessment Protocol

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Liver tissue for histomorphologic examination was taken from the medial lobe of each animal, fixed in 10% neutral-buffered formalin for 24 h, then placed in 70% ethanol until paraffin embedding and hematoxylin and eosin (H&E) staining. Masson Trichrome staining was also performed using the Masson Trichrome Kit from Sigma-Aldrich (St. Louis, MO) per manufacturer's instructions. All slides were imaged with a Leica DM4000B microscope, DFC450 camera, and Leica Application Suite software (Leica Microsystems, Wetzlar, Germany). Sections were examined by light microscopy by a board certified blinded veterinary pathologist (Burkhardt et al., 2011 (link)). Liver necrosis, inflammation, fibrosis, lipid accumulation, and biliary hyperplasia were scored. The scoring criteria were as follows: 0 (no lesion), 1 (<10% lesion; minimal), 2 (10–25% lesion; mild), 3 (25–40% lesion; moderate), 4 (40–50% lesion; marked), and 5 (>50% lesion; severe). Representative histology images were acquired with a Leica DM4000B microscope, DFC450 camera, and Leica Application Suite software (Leica Microsystems).
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3

Histological Analysis of Rat Intervertebral Discs

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Lumbar IVDs from different group of rats were fixed in 4% paraformaldehyde (Sigma-Aldrich; #158127). After dehydration, IVDs were embedded in paraffin, followed by cutting into 5-μm sections. The slices were then stained with hematoxylin-eosin (H&E) (Sigma-Aldrich; #1051750500) and images were photographed using a LEICA DM4000 B microscope. The IHC staining in NP tissues procedures were same as described previously 27 (link). Antibodies were same as described in the western blot assay. The DAB (3,3′-Diaminobenzidine) kit was purchased from Abcam company (#ab64264).
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4

Stereological Analysis of Dopaminergic Innervation

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As described previously (Manitt et al., 2013 (link); Reynolds et al., 2018 (link)), the density of TH-positive (TH+) fibers and varicosities in the inner layers of the PrL and IL regions of the pregenual mPFC was evaluated using a stereological fractionator sampling design (West et al., 1991 (link)), with the optical fractionator probe of the Stereoinvestigator software (MicroBrightField). In the PFC, the TH antibody labels predominantly DA axons and rarely labels norepinephrine axons (Manitt et al., 2011 (link), 2013 (link)). Regions of interest were delineated according to the mouse brain atlas (Paxinos and Franklin, 2019 ), and contours of the TH+ projection within these regions were traced at 5× magnification with a Leica DM4000B microscope. Stereoinvestigator calculates, for each brain region, a volume (in cubic micrometers) measurement from the contour area, section thickness, and section periodicity (MicroBrightField). Sections spanning plates 14–18 of the mouse brain atlas were studied. Stereoinvestigator calculates the total number of TH+ varicosities based on the experimenter’s random sampling of a known fraction of the region. Counting frame and grid size were chosen to consistently sample 33 sites per region.
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5

Morphological Characterization of Insect Genitalia

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All specimens are deposited in the Insect Collection, Seoul National University (SNU), South Korea. Digital images of dorsal habitus are taken with a Canon EOS 70D, with a Canon MP–E 65–mm F2.8 1–5x macro lens. Genital structures are dissected and observed under a Leica DM 4000B microscope, and images are taken using a digital camera attached to the microscope (Lumenera Infinity 3). All measurements (mean and range) are provided in millimeters.
Terminology used to describe the male and female genitalia follows Yasunaga (1998) (link) and Yasunaga and Schwartz (2007) , and is indicated with the following abbreviations: IRL: interramal lobe; LL: lateral lobe; DLP: dorsal labiate plate; DOS: dorsal sac; FP: fin-like process (of theca); LS: left lateral sclerite; MS: median sclerite; PB: Phallobase; PML: primary lobe; RM: ramus; RS: right lateral sclerite; SD: seminal duct; SGP: secondary gonopore; SP: spiculum; SPGC: sclerotized perimeter of genital chamber; SR: sclerotized ring; TH: phallotheca.
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6

Testicular Histomorphometry and Germ Cell Analysis

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Testicular tissue was sectioned (5µm) using a Microtome (Leica Biosystems, model RM2125RT). One testis section from each animal was stained (haematoxylin and eosin (H&E)) and four representative images of the lobuli testis captured (Leica DM4000B microscope with a Leica DC480 digital camera using Leica Qwin software) at 40x magnification from separate areas (top, bottom, left, and right). The number of Sertoli cells and gonocytes for each seminiferous tubule captured within each image (mean = 17.7 tubules per image) was determined by manual cell counting in ImageJ (version 1.53a). To be cautious with regards to mis-identifying cells as somatic, gonocytes were determined by satisfying any two of three morphological criteria: size (large), shape (circular), or location (within lumen). Mean gonocyte / Sertoli cell per tubule ratios were calculated relative to the mean control ratio, as well as the proportion of seminiferous tubules without gonocytes (Sertoli cell-only).
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7

Evaluating Intestinal Cell Apoptosis via TUNEL

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The liver tissues were post-fixed in 4% paraformaldehyde for 2 days. A sequential 20% to 30% sucrose treatment was performed for 1 day; then, the intestinal samples were cryosectioned (10 μm thickness), and the samples were sliced. Cell apoptosis in the intestines was evaluated by TUNEL staining using an In Situ Cell Death Detection Kit (Roche, Shanghai, China) according to the manufacturer’s protocol. A Leica DM 4000B microscope or Leica TCS SP5 microscope was used to examine staining via conventional or confocal imaging, respectively. TUNEL quantification was made by counting the TUNEL-positive cells using five random fields at 400× magnification.
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8

Immunofluorescence Analysis of β-catenin and GSK-3β

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In vitro IEC-6 cells were post-fixed in 4% paraformaldehyde for 20 min and incubated in 0.3% Triton X-100 for 20 min. Intestinal tissue sections or cells were washed 3 times in PBS, blocked with 5% BSA solution for 1 h, and incubated with a primary antibody overnight at 4 °C. The primary antibodies were as follows: anti-rabbit β-catenin (Santa Cruz Biotechnology, Santa Cruz, CA) and anti-rabbit GSK-3β (Santa Cruz Biotechnology, Santa Cruz, CA). An Alexa Fluor 594 secondary antibody (Invitrogen Life Technologies, Carlsbad, CA, USA) was added for 1 h at 37 °C. Then, 4,6-diamidino-2- phenylindole (DAPI, Beyotime, Shanghai, China) was added as a nuclear counterstain. A Leica DM 4000B microscope or a Leica TCS SP5 microscope was used to examine staining for conventional or confocal imaging, respectively.
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9

In-situ hybridization of placental miRNAs

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Formalin-fixed paraffin sections (6-μm thickness) of IH surgical specimens were dewaxed in xylene and rehydrated in an ethanol series followed by PBS. For placenta sections, after dewaxing and rehydration, placenta sections were placed in 15% glacial acetic acid for 15 minutes to inactivate endogenous alkaline phosphatase (69 (link)) followed by two 5-minutes washes in PBS, before proteinase K treatment. ISH, with 5′, 3′ digoxigenin-labeled locked nucleic acid probes (LNA) for hsa-miR-126a-3p, hsa-miR-517a/c and a scrambled negative control probe (Exiqon), was performed using an Exiqon ISH optimization kit according to the manufacturer’s instructions. All probes were used at a concentration of 40 nM. Hybridization and posthybridization high-temperature washes were performed at 55°C. Probes were detected using alkaline phosphatase–conjugated sheep anti-digoxigenin Fab fragments and NBT/BCIP (both from Roche). Sections were examined and images were collected using a Leica DM4000B microscope and Leica Application Suite software, v4.5.
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10

Immunohistochemical Analysis of Vimentin and S100A9

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Formalin-fixed and paraffin-embedded tissues were processed and sectioned according to routine protocols. Heat mediated antigen retrieval was used prior to all staining procedures. Tissues were incubated with vimentin antibody (1:200 dilution, clone D21H3, Cell Signaling Technology) or S100A9 antibody (1:100 dilution, provided by Dr. Philippe Tessier at Laval University) overnight at 4 °C. Antigen was detected using the EnVision+ Dual Link System (Dako) and counterstained with hematoxylin. Images were taken using a Leica DM4000B microscope and a Leica MC120 HD camera with a 40× objective.
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