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Tsq quantum ultra

Manufactured by Thermo Fisher Scientific
Sourced in United States, France, Japan, Italy, Slovenia

The TSQ Quantum Ultra is a triple quadrupole mass spectrometer designed for high-performance quantitative and qualitative analysis. It features enhanced sensitivity, resolution, and mass accuracy to support a wide range of applications, including environmental testing, food safety, and pharmaceutical research.

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95 protocols using tsq quantum ultra

1

Steroidogenic Hormone Profiling by LC-MS/MS

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Steroidogenic hormone profiling was performed on day 0, 7, 14, and was performed by a central laboratory, Quest Diagnostics (New Jersey Nichols Institute, San Juan Capistrano, CA, USA). Androstenedione, oestrone sulphate, dehydroepiandrosterone sulphate (DHEAS), dehydroepiandrosterone (DHEA), androstenediol, and testosterone were quantitated using a TSQ Quantum Ultra (Thermo Fisher; San Jose, CA) triple quadrupole tandem mass spectrometry. While estrone and estradiol were detected and quantitated on negative ionization mode using a triple quadrupole tandem mass spectrometer with APCI source (TSQ Quantum Ultra, Thermo Fisher; San Jose, CA). The detailed methodology is detailed in the Supplementary Materials and Methods.
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2

Pharmacokinetics of Levobupivacaine Plasma Concentrations

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All patients received a dedicated intravenous line contralateral to the fluid line for blood sampling. Venous blood samples of 2 mL each were obtained at 2.5, 5, 7.5, 10, 12.5, 15, 30, 60, and 120 min after completion of the blockade. Each blood sample was collected in a tube containing heparin and immediately placed on ice. Plasma was separated by centrifugation of blood samples at 1,500 × g for 10 min and stored at -20 °C until subsequent analyses. Plasma levobupivacaine concentrations were measured using high-performance liquid chromatography (Accela; Thermo Fisher Scientific Co., Ltd., Kanagawa, Japan) and liquid chromatography-mass spectrometry with a triple-stage quadrupole mass spectrometer (TSQ Quantum Ultra; Thermo Fisher Scientific Co., Ltd.) or high-performance liquid chromatography (Vanquish Flex; Thermo Fisher Scientific K.K., Tokyo, Japan) and liquid chromatography-mass spectrometry with a triple-stage quadrupole mass spectrometer (TSQ Altis; Thermo Fisher Scientific K.K.).
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3

Metabolic Profiling of Plant Samples

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Intracellular amino acids, sugar phosphates, organic acids, and sugar alcohols were quantified using gas chromatography-mass spectrometry (GC-MS) analysis (7890 A GC coupled to 5975 C MSD; Agilent Technologies, Santa Clara, CA, USA). Intracellular AMP, ADP, and ATP were quantified using liquid chromatography–mass spectrometry (LC-MS)/MS (Ultimate 3000 & TSQ Quantum Ultra, ThermoFisher Scientific Co., Ltd). The assays were consistent with the previous study [47 (link), 48 (link)].
The content of MDA and the activities of POD, CAT, and GST enzyme were measured using commercial kits (BC0025, BC0095, BC0205, and BC0355, Solarbio), following the manufacturer’s recommendations.
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4

Quantification of Ergot Alkaloids in Animal Feeds

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The quantities of EAs were determined by liquid chromatography coupled with a tandem mass spectrometry (LC/MS/MS) (TSQ Quantum Ultra, ThermoFisher Scientific, Villebon sur Yvette, France) at Qualtech laboratory (Vandœuvre, France).
After preparation, diets were analyzed four times and the mean EA concentrations were 2.36 and 5.05 mg/kg, for diets with ergot dose 1 and 2, respectively. The most abundant alkaloid was ergotamine, followed by ergosine, ergocristine and their corresponding-inine epimers (Table 4). The amount of the-ine isomers was approximately two-thirds of total alkaloids.
Contamination with other mycotoxins was investigated. Deoxynivalenol was naturally present in the wheat (19 μg/kg) and corn (171 μg/kg) but at an insignificant rate. Other mycotoxins, including DON acetylated, nivalenol, T2, HT-2, zearalenone and fumonisin were below the detection limit.
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5

Quantification of 25-Hydroxyvitamin D by UHPLC-MS/MS

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We used an Accela UHPLC system coupled to a TSQ Quantum Ultra tandem mass spectrometer (both Thermo Fisher Scientific, Waltham, MA) in positive atmospheric pressure chemical ionization (APCI) mode for analysis. Isocratic elution (73% MeOH/water at 0.45 mL/min) for 12 min on an Ascentis F5 analytical column (2.1 mm × 150 mm, 2.7 μm, Sigma-Aldrich, St. Louis, MO) held at 27 °C, followed by a short (1–3 min) column flush with 100% methanol and short (1–3 min) equilibration to initial conditions, resulted in a < 20 min instrument analysis time per sample. The autosampler tray temperature was maintained at 7 °C. Injection volume, using partial loop mode, was 30 μL. Mass detection was carried out under selected reaction monitoring (SRM) conditions using the following transitions: m/z 383.3 → 365.1 (quantitation) and 383.3 → 105.0 (confirmation) for 25(OH)D3, m/z 395.3 → 377.3 (quantitation) and 395.3 → 209.1 (confirmation) for 25(OH)D2, m/z 389.3 → 371.1 for d6-25(OH)D3 and m/z 398.3 → 380.3 for d3-25(OH)D2. Scan time was 0.25 sec. Mass resolution in Q1 and Q3 was set at 0.7 full width at half maximum. We used Xcalibur 2.0.6 software (Thermo Fisher Scientific) for instrument control and data collection and processing.
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6

Aflatoxin Quantification in Milled Maize and Peanuts

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Aflatoxins in milled maize and peanuts were extracted with previously described method (Warth et al., 2012 (link)). One gram of each sample was placed into a 5 ml polypropylene tube and extracted with 5 ml acetonitrile/water (84/16, v/v). The samples were mixed for 1 min on vortex, and then sonicated for 60 min. After centrifugation, 1 ml of supernatant was transferred into new tubes and 1 ml of hexane was added. Following a 10 min extraction, 500 μl of the upper (organic) layer was sampled and used for LC-ESI-MS aflatoxin analysis with a Thermo Surveyor plus HPLC system coupled to a TSQ Quantum Ultra mass spectrometer (Thermo Scientific, CA, USA) (Warth et al., 2012 (link)). The mobile phase consisted of eluent A (MeOH) and eluent B (water containing 5 mM ammonium acetate and 0.05% formic acid); the flow rate for the analysis was 0.3 mL/min. The linear gradient program was as follows: 0–1 min, 20% A; 1–4 min, 20–100% A; 4–5 min, 100% A; 5–5.5 min, 100%–20% A; 5.5–7 min, 20% A, giving a total analysis time of 7 min. Authentic reference standard aflatoxin compounds (AFB1, AFB2, AFG1, and AFG2) were purchased from Sigma (Sigma-Aldrich, St. Louis, MO, USA) and used as standards for identification and quantification.
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7

Quantitative LC-MS/MS Analysis Protocol

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LC–MS/MS investigations were carried out employing a Thermo Scientific Vanquish LC system connected to a TSQ Quantum Ultra triple quadrupole mass spectrometer (Thermo Scientific, Orlando, FL, USA) equipped with a heated electrospray ionisation source (H-ESI). Xcalibur 4.4 Software (Thermo Scientific) was used for method setup, data processing and reporting. The mass spectrometer was operated with a H-ESI interface handled in both positive and negative ionization modes and was utilized for the multiple reaction monitoring. Instrument settings were: positive ion: 3600 v, negative ion: 3400 v, sheath gas 0.3 mL/min, aux gas 0.3 mL/min, ion transfer tube temp 345 °C, vaporizer temp 350 °C.
Chromatographic fractionation was accomplished on a Thermo Hypersil GOLD C18 column (1.9 µm, 100 × 2.1 mm) at 30 °C, and versatile stage comprised 0.1% formic corrosive and water for dissolvable A and acetonitrile for dissolvable B at a stream rate of 0.3 mL/min. The gradient elution conditions of mobile phase B are as follows: 0–0.5 min: 5%, 0.5–2 min: 5–8%, 2–2.1 min: 40%, 2.1–4 min: 40–50%, 4–6 min: 50–60%, 6–6.1 min: 60–70%, 6.1–8 min: 70–80%, 8–8.1 min: 80–5%, 8.1–10 min: 5%. The sample size for analysis was 3 μL.
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8

Flow Injection Analysis for Caffeine and Aflatoxin B1

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To perform the flow injection measurements, a LC-20 AD pump equipped with a low-pressure gradient unit and the standard mixer (Shimadzu Benelux, 's-Hertogenbosch, The Netherlands) delivered the mobile phase at a flow rate of 20 µL/min. The mobile phase consisted of ACN/water/NH4FA pH 3.7 (45/54/1, v/v/v). A HTC PAL (CTC Analytics, Switzerland) with a 10 µL loop was used to inject test solutions into the solvent flow. The loop was overfilled three times. The same TSQ Quantum Ultra triple-quadrupole mass spectrometer with IonMax HESI2 interface (Thermo Scientific, Erembodegem-Aalst, Belgium) was used in SRM mode. The source settings were as follows: vaporizer temp. off, capillary temp. 300 °C, sheath gas press. 10 a.u., auxiliary gas press. 1 a.u., sweep gas press. 1 a.u. The collision gas was argon at 1.5 mTorr. The spray voltage was set to 3 kV and the tube lens to 110 V. The following transitions (respective collision energies in parentheses) were continuously measured for the run time of 2 min: for Caffeine m/z 195->83 (30 eV), 195->110 (30), 195->138 (30); for AFB1 m/z 313->241 (37 eV), 331->270 (29).
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9

Synthesis and Characterization of Novel Compounds

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All commercial reagents and solvents were used as received without further purification unless otherwise indicated. Synthetic compounds 3ad and 4al were directly used for reaction without further purification and characterization. Melting points were recorded on an SGW X-4 microscope melting point apparatus (Shanghai Tech Instrument Co., Ltd., Shanghai, China). Infrared spectra (IR) were performed on NICOLET iS10 sepectrometer (Shimazu Co., Ltd., Kyoto, Japan). NMR spectra were recorded on a Bruker Avance 500MHz spectrometer (Bruker Co., Ltd., Zurich, Switzerland) at room temperature with tetramethylsilane (TMS) as an internal standard and CDCl3 or DMSO-d6 as solvents. Mass spectra (MS) were obtained by LCMS-IT-TOF spectrometer (Shimadzu Co., Ltd., Kyoto, Japan) or TSQ Quantum Ultra (Thermo Scientific Co., Ltd., Madison, WI, USA). Elemental analysis for C, H, O, and N were carried out with Elementar VarioMICRO Cube analyzer (Elementar, Frankfurt, Germany).
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10

Histone Modification Quantification

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5x106 mESCs per growth condition (Serum or 2i) were harvested, washed once with PBS, spun down at 800 g for 5 min. The cell pellets were flash frozen and sent to ActiveMotif for their Mod Spec® service. Briefly, histones were acid extracted, derivatized via propionylation, digested with trypsin, newly formed N-termini were propionylated, and then measured three separate times using the Thermo Scientific TSQ Quantum Ultra mass spectrometer coupled with an UltiMate 3000 Dionex nano-liquid chromatography system. The data was quantified using Skyline, and represents the percent of each modification within the total pool of that tryptic peptide.
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