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Rhodamine conjugated phalloidin

Manufactured by Merck Group
Sourced in United States, China

Rhodamine-conjugated phalloidin is a fluorescent stain used to visualize and detect actin filaments in cells. It specifically binds to filamentous actin, allowing for the imaging and analysis of the cellular cytoskeleton.

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63 protocols using rhodamine conjugated phalloidin

1

Osteoclast Formation Assay with RAW264.7 Cells

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RAW264.7 cells were incubated in a confocal culture dish (diameter, 35 mm) at adensity of 5 × 104 cells·dish−1 for 24 h, treated with 25 ng·mL−1 RANKL and the screened compounds for five days, fixed with 4% paraformaldehyde for 30 min, stained with 5 μg·mL−1 rhodamine-conjugated phalloidin (Sigma-Aldrich Chemical Co.) at 37 °C for 40 min, washed with PBS again, and stained again with 4′,6-diamidino-2-phenylindole (DAPI, Beyotime, Shanghai, China) for 10 min at room temperature (Li et al., 2018). The F-actin ring of the osteoclasts was observed under a fluorescent microscope (Axiovert 200, Carl Zeiss, Oberkochen, Germany). The fluorescence images of the cells were processed using Zeiss ZEN software.
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2

Quantifying Osteoclast Formation

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RAW 264.7 cells were seeded (3.0 × 103 cells/well) on 96-well plates and treated or not with the indicated stimuli. After 5 days, the cells were fixed with 4% paraformaldehyde (PFA) for 20 min and F-actin ring-formation was evaluated by staining cells for 60 min at 37 °C with 10 µg/mL rhodamine-conjugated phalloidin (Sigma-Aldrich). Nuclei were then stained with 4′,6-diamidino-2-phenylindole (DAPI, Sigma-Aldrich). The samples were viewed by an epifluorescence microscope (Leica DMRB, Wetzlar, Germany) equipped with a digital camera.
The number of OCs in 40 µm2 areas was counted in 9 random fields in triplicate and reported as F-actin rings positive cells containing 3 or more than 3 nuclei.
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3

Fluorescence Microscopy of Live Yeast

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For fluorescence microscopy of live yeast to visualize GFP, cells were cultured in SR medium for 18 h at 30 °C, then, the appropriate amount of these cultures was suspended into fresh SG to reach an OD600 of 0.3, and they were incubated for additional 4–6 h for GAL1 promoter induction. Cells were harvested by centrifugation and observed directly. To monitor vacuolar morphology and endocytosis, staining with FM4-64 was performed as described [21 (link)]. Nuclear labelling was performed by adding DAPI at 1:1000 directly to the harvested cells in vivo and washed once with PBS. To observe actin, yeast cells were fixed and treated with rhodamine-conjugated phalloidin (Sigma) as described [23 (link)].
Indirect immunofluorescence on yeast cells was performed as previously described [51 (link)]. Antibodies were used as follows: As primary antibody, monoclonal rat anti-alpha-tubulin (Serotec, YOL1/34) at 1:500 dilution; as secondary antibody, Alexa Fluor 594 anti-rat dye (Life Technologies) at 1:1000 dilution. DAPI was added at 1:1000 for nuclear labelling. Cells were examined in Eclipse TE2000U microscope (Nikon, Tokyo, Japan) and digital images were acquired with an Orca C4742-95-12ER charge-coupled-device camera (Hamamatsu Photonics, Hamamatsu City, Japan) and processed by HCImage and ImageJ software.
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4

Immunostaining of Adult Insect Brains

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Dissections of adult brains with the proboscis were carried out in 1x phosphate-buffered saline (PBS) and fixed in 4% freshly prepared PFA (in 1x PBS) for 30 min at RT. After removal of the fixative the preparations were washed for 6 × 15 min with 0.3% PTX (0.3% Triton X-100 in 1× PBS) at RT. Blocking of samples was performed for 15 min at RT in 0.1% PBTX (0.1% BSA in 0.3% PTX). Primary antibody was diluted in 0.1% PBTX and samples were incubated at 4°C for 12 hr on a shaker. The following primary antibodies were used: chicken anti-GFP (1:500; Abcam, Cambridge, UK) and mouse anti-neurotactin (Nrt, BP106, 1:10; DSHB; RRID:AB_528404). Samples were washed in 0.3% PTX for 1 hr and Alexa-488, 568, and 647 conjugated secondary antibodies were applied in 0.1% PBTX for 2 hr. Rhodamine-conjugated phalloidin (1:200 Sigma) was used to visualize muscles. Preparations were mounted in Vectashield mounting media (Vector Laboratories) and imaged on an Olympus FV 1000 confocal point scanning microscope. ImageJ, Adobe Photoshop and Amira 5.4.3 software (Visage Imaging, Berlin, Germany) was used for image processing and 3D reconstructions.
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5

Fluorescent Staining of Ovarian Tissue

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The ovaries were dissected and fixed for 40 min in 4% formaldehyde in phosphate-buffered saline PBS (NaCl, 137 mM; KCl, 2.7 mM; Na2HPO4, 8 mM; KH2PO4, 1.5 mM) containing 0.1% Triton X-100. After a few rinses with PBS, the material was first examined with a stereomicroscope Olympus SZX 10 and a light microscope equipped with Nomarski optics and then subjected to whole-mount fluorescent staining. For detection of cell nuclei (DNA), the material was stained with 0.2 mg/ml DAPI (4′,6 diamidino-2′-phenylindole dihydrochloride) (Sigma, D9542) for 20 min in darkness. For detection of microfilaments (F-actin), the ovaries were stained with 2 mg/ml rhodamine-conjugated phalloidin (Sigma, P1951) for 20 min in darkness. In both cases, after rinsing with buffer, the ovarioles were whole-mounted onto microscope slides and examined with either an Olympus BHS light microscope equipped with an epifluorescence device or with an Olympus FV1000 confocal microscope.
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6

Visualization of F-Actin Cytoskeleton

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Cells seeded on 2% gelatin-coated glass coverslips were fixed with 4% PFA for 20 min. F-actin was stained with rhodamine-conjugated phalloidin (Sigma Aldrich#P1951) as described 26 (link). Images were analyzed by confocal microscopy.
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7

Whole-mount Fly Eye and Brain Imaging

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All flies were age-matched for experiments. The whole-mount preparation of fly eyes and brains was performed as previously described46 (link).The following primary antibodies were used with the indicated dilutions: anti-lamin B1 (Sigma, 1:20), anti-GABA (GeneTex, 1:200), anti-human pan-tau (Dako, 1:200), anti-tau-C3 (Invitrogen, 1:200), anti-GFP (Abcam, 1:100), anti-AT8 (Thermo, 1:200), anti-AT100 (Thermo, 1:100), and anti-PHF1 (Abcam, 1:100). Alexa Fluor 488, Cy3, and Cy5 conjugated secondary antibodies (Jackson ImmunoResearch Laboratories) were used at 1:100 dilutions. F-Actin enriched rhabdomere and spots of aberrant actin accumulations were labeled by rhodamine-conjugated phalloidin (Sigma, 1:20) and Alexa Fluor 633-conjugated phalloidin (Thermo, 1:50), respectively. Samples were analyzed on Zeiss LSM510 or LSM800 confocal microscopes.
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8

Cytoskeletal Visualization by Phalloidin Staining

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To analyse cytoskeletal organization, cells grown on glass slides to semi-confluence were fixed with 2.5% formaldehyde, permeabilized with 0.1% Triton X-100 for 10 min at 4 °C, and then incubated with 0.1 µg/ml rhodamine-conjugated phalloidin (Sigma-Aldrich) for 40 min. After nuclear staining with 4-6-diamidino-2-phenylindole dye (DAPI), cells were analyzed by a fluorescence inverted microscope connected to a camera (Carl Zeiss, Oberkochen, DE).
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9

Actin Cytoskeleton Visualization Protocol

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After the indicated stimulation, cells were fixed with 4% formaldehyde for 15 min at room temperature and then permeabilized in 0.15% Triton X-100 in PBS for 30 min. Next, cells were incubated in rhodamine-conjugated phalloidin (Sigma-Aldrich, China) for 1 h at 37 °C. After washing with PBS, cells were imaged as above.
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10

Immunofluorescence Staining of Neural and Cytoskeletal Markers

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The following antibodies were used: rabbit anti-neurofilament heavy chain (Sigma, #N4142) at 1:1000, rabbit anti-myelin basic protein (Sigma, #M3821) at 1:500; rabbit anti-p75NTR (Millipore, #07-476) at 1:300; goat anti-anillin (Santa Cruz, #sc-54859) at 1:50; rabbit anti-myosin IIA (OneWorld, #bs_8564R) at 1:50; goat anti-rabbit Alexa Fluor 488 (Invitrogen, #A11034) at 1:1000; goat anti-rabbit Alexa Fluor 546 (Invitrogen, #A11035) at 1:1000; rabbit anti-goat Alexa Fluor 488 (Invitrogen, #A11078) at 1:1000 and Rhodamine-conjugated Phalloidin (Sigma, #P1951) at 1:1000.
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