The largest database of trusted experimental protocols

78 protocols using anti bdnf

1

Hippocampal BDNF Signaling Pathway Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Protein from hippocampal tissue was homogenized with ice-cold homogenizing buffer and incubated on ice for 30 min. The homogenates were centrifuged at 14,000 g for 10 min at 4°C. The total protein of supernatant was subsequently measured by using BCA assay kit (Beyotime, Shanghai, China). Equal amounts of total protein (25 μg/lane) were separated on 8–12% SDS-PAGE and electrotransferred to PVDF membranes. After blocking the membranes with TBST containing 5% nonfat dried milk for at least 2 h at room temperature, membranes were incubated with the primary antibody (anti-BDNF, 1 : 1000, Epitomics; anti-p-TrkB, 1 : 1000, Epitomics; β-actin 1 : 2000, Proteintech) at 4°C overnight. Then the blots were washed three times for 8 min by using TBST and incubated with secondary antibody for 1 h. After washing, protein bands were analyzed using the enhanced chemiluminescence detection system (BeyoECLPlus kit, Beyotime, P0018). The signal of the immunoblot was analyzed using Image J software and calculated with β-actin (a loading control).
+ Open protocol
+ Expand
2

Immunohistochemical Analysis of Hippocampal Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
The paraffin-embedded hippocampal sections were deparaffinized, rehydrated, and pretreated with hydrogen peroxidase in phosphate buffer solution. Heat-induced antigen retrieval was conducted. After blocking with the appropriate antisera, sections were incubated with anti-β-arrestin 2 (CST, 1 : 50 dilution), anti-BDNF (epitomics, 1 : 100 dilution), anti-TrkB (Bioss, 1 : 100 dilution), anti-phospho-ERK (Thr202/Tyr204, CST, 1 : 50 dilution), anti-CRHR1 (Bioss, 1 : 100 dilution), and anti-CRHR2 (Abcam, 1 : 50 dilution). After incubation with HRP-conjugated secondary antibody and tyramide amplification followed by streptavidin-HRP, positive signals were visualized by a diaminobenzidine kit and counter-stained with hematoxylin.
+ Open protocol
+ Expand
3

Western Blot Analysis of BDNF Signaling

Check if the same lab product or an alternative is used in the 5 most similar protocols
After anaesthetizing the rats with 10% chloral hydrate (Shanghai Xinya Medical Company, Shanghai, China), the TG tissues were taken out and homogenized with a detergent lysis buffer containing phenylmethanesulfonyl fluoride (PMSF). The lysate was then transferred to a 1.5 ml centrifuge tube with a pipette and centrifuged at 12000 rpm for 5 minutes at 4 °C. The supernatant was collected and placed at −20 °C. The total protein in the supernatant was measured using the Lowry method. The protein was diluted with a sample buffer and at 95 °C for 10 minutes. SDS-polyacrylamide gel (12%) electrophoresis was used to separate the same amount of proteins (20 μg), and then transferred onto a nitrocellulose (NC) membrane in a Bio-Rad electrophoresis device. Primary antibodies (rabbit polyclonal anti-BDNF, Abcam; TrkB, Abcam; ERK1/2 or p- ERK1/2, Cell Signaling Technology; and β-actin, Advanced Immunochemicals) were used. The secondary antibody, goat anti-rabbit IgG, was purchased from Beijing Zhongshan Biotech. Using a Bio-Rad system, the labelled proteins were then imaged with an enhanced chemiluminescence. The optical density of the target proteins band were calculated using Image-Pro Plus software after normalizing to each β-actin band36 (link).
+ Open protocol
+ Expand
4

Hippocampal Protein Expression Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
The hippocampi of rats were rapidly collected and stored in liquid nitrogen immediately. The protein concentration was tested using a Pierce bicinchoninic acid (BCA) protein assay kit (Thermo scientific). Samples containing 40 μg of total protein were separated in 10%–15% sodium dodecyl sulfate (SDS)‐polyacrylamide gels and then transferred to polyvinylidene difluoride (PVDF) membranes (0.22 μm; Millipore Corp). The membranes were blocked in TBST containing 5% nonfat dry milk for 90 min and incubated with the following primary antibodies overnight at 4°C: anti‐PSD95 (goat monoclonal antibody; Abcam, 1:2,000), anti‐SYP (rabbit monoclonal antibody; Abcam, 1:2,000), anti‐GAP43 (rabbit monoclonal antibody; Abcam, 1:2,000), anti‐BDNF (rabbit monoclonal antibody; Abcam, 1:2,000), anti‐p‐CREB (phosphor S133, rabbit monoclonal antibody; Abcam, 1:5,000), anti‐CREB (rabbit monoclonal antibody; Abcam, 1:2,000), and anti‐β‐actin antibody (1:500, mouse monoclonal antibody; Boster, 1:500). On the next day, the membranes were incubated with the corresponding secondary antibody (anti‐goat/rabbit/mouse IgG; ZSGB‐BIO, 1:5,000) for 90 min at room temperature. After using clarity western electrochemiluminescence (ECL) substrate (Bio‐Rad), protein bands were visualized in the Bio‐Rad Imager. The intensities of the protein bands were analyzed by densitometry using Syngene imaging systems.
+ Open protocol
+ Expand
5

Western Blot Analysis of Brain Protein Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
Brains were homogenized and processed for western blotting as previously described [27 (link)]. Thirty μg of proteins were loaded in each lane and separated followed by transfer to nitrocellulose membranes. The membranes were blocked using 5% non-fat milk in TBST (1% tween 20 in tris buffered saline) and probed with the following antibodies antiBDNF (1:250; abcam; Cambridge, MA), TrkB (1:500, abcam; Cambridge, MA), p75NTR (1:1000, Millipore; Billerica, MA), Nogo-A (1:1000, Millipore; Billerica, MA), CHOP (1:1000) and nNOS (1:1000, Cell Signaling; Danvers, MA), ATF6 (1:500), pJNK (1:1000) and JNK (1:1000, Santa Cruz biotechnologies; Santa Cruz, CA). Expression was assessed by quantification of optical density of respective bands normalized to actin using NIH-image J software.
+ Open protocol
+ Expand
6

Immunofluorescence Staining of Rat Brain Tissues

Check if the same lab product or an alternative is used in the 5 most similar protocols
Five sections of the brain cortex and anterior horns of the spinal cord from each rat were randomly selected and subjected to immunofluorescence staining. The tissue sections were incubated overnight at 4 °C with anti-NF-200 (1:500; Abcam, Cambridge, MA, USA), anti-GAP-43 (1:100; Santa Cruz Biotechnology, Santa Cruz, CA, USA), anti-activated caspase-3 (1:500; Cayman Chemical, Ann Arbor, MI, USA), anti-BDNF (1:500; Abcam), anti-NF-κB p65 (1:500; Abcam), Anti-p75NTR (1:500; Abcam), anti-MBP (1:500; Abcam), anti-glial fibrillary acidic protein (GFAP, 1:200, Thermo Fisher Scientific, Waltham, MA, USA), anti-COX-2 (1:1000; BioVision, Milpitas, CA, USA), and anti-CD68 (1:100; Santa Cruz Biotechnology) antibodies, individually. After washing in PBS, the sections were incubated with TRITC/FITC-conjugated secondary antibodies (1:200; Invitrogen, Carlsbad, CA, USA) for 1 h at 37 °C. The sections were subsequently mounted on glass slides and coverslipped with Antifade Gel Mount Aqueous Mounting Media (Southern Biotech, Birmingham, AL, USA). Stained sections were viewed under a microscope at 200x magnification, and images were taken of three fields per tissue section. Areas stained positively for GFAP, MBP, and CD68 were analyzed using NIH Image software. The numbers of cells stained positively for GAP43, caspase-3, NF-200, BDNF, NF-kB p65, COX-2, Caspase-3, and p75NTR were counted.
+ Open protocol
+ Expand
7

Protein Expression Analysis in Hippocampus

Check if the same lab product or an alternative is used in the 5 most similar protocols
The protein samples (50 µg of protein) were prepared from micro-dissected hippocampus and separated by 12% SDS-PAGE gel. Proteins were transferred to nitrocellulose membranes using a Bio-Rad Miniprotein III System wet transfer unit for 1 h at 4 °C. Transfer membranes were then incubated with blocking solution (5% nonfat dried milk dissolved in TBST buffer, pH 7.5) for 1 h at room temperature, then incubated with anti-BDNF (1:1000, Abcam), anti-PKA(1:1000, Imagenex), anti-CREB (1:1000, Cell Signaling), anti-pCREB (Ser133, 1:1000, Cell Signaling), anti-MeCP2 (1:2000, Cell Signaling), anti-pMeCP2 (Ser421, 1:1000, Abgent), anti-TrkB (1:1000, Millipore) and anti-pTrkB (Tyr706, 1:1000, Cell Signaling) overnight at 4 °C. Membranes were incubated with secondary antibodies for 1 hat 4 °C. Signal detection was performed with an enhanced chemiluminescence kit (Amersham Biosciences) and quantitated by using the GS-710 Calibrated Image Densitometer (Bio-Rad).
+ Open protocol
+ Expand
8

Immunofluorescence Analysis of Neuronal Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
Immunofluorescence was performed following previous studies in which rats anesthetized to death were immobilized by heart perfusion with 0.9% saline and 4% paraformaldehyde [33 (link)]. After repeated perfusion to the anatomy of the brain tissue after the rat body stiffened, the prefrontal regions, such as the coronal section, in turn in 20%, 25%, and 30% sucrose-fixed dehydration, gel embedding, freezing, the parts with cryostat coronary frozen section (10 microns), membrane breaking, repair, washing with phosphate-buffered saline (PBS) 3 times and sealed with 5% sheep serum. The slices were incubated for 12 h in anti-GluA1 (1:200, Cell Signaling, #13185, Shanghai, China), anti-BDNF (1:200, Abcam, ab108319, Shanghai, China), and anti-PSD-95 (1:200, Cell Signaling, #3450, Shanghai, China) at 4°, then incubated at constant temperature in the second antibody for an hour. Finally, the nuclei were stained with DAPI (Solarbio, C0065, Beijing, China), and the immunofluorescence of the treated specimens was observed by fluorescence microscope (Olympus Corporation, Japan). The secondary antibody used was Alexa Fluor 488-conjugated Goat Anti-Rabbit IgG (1:200, Proteintech, SA00006-2, Wuhan, China) and Alexa Fluor 594-conjugated Affinipure Goat Anti-Mouse IgG (1:200, Proteintech, SA00006-3, Wuhan, China).
+ Open protocol
+ Expand
9

Western Blot Characterization of Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total protein from brain tissue or BV2 cells was collected, and protein concentrations were determined with a BCA kit (Beyotime Institute of Biotechnology, China) following the manufacturer’s guidelines. Equal amounts of protein were separated by SDS-polyacrylamide gel electrophoresis, transferred to polyvinylidene difluoride membranes (Millipore, MA, USA), blocked with 5% skim milk, and incubated with primary antibodies (see below) either overnight at 4 °C or for 1 h at room temperature. The membranes were washed and incubated with a horseradish peroxidase-conjugated anti-rabbit IgG secondary antibody (1:500; Beyotime Institute of Biotechnology, China) and were visualized using an ECL Plus kit (Millipore). Densitometry was performed to quantify the signal intensity using ImageJ software (Version 1.45 J; National Institutes of Health, Bethesda, MD, USA). The primary antibodies were rabbit anti-Nrf2, anti-HO-1, anti-NF-κB1, anti-CD29, anti-CD90, anti-CD44, anti-CD105, anti-CD34, anti-vWF, anti-BDNF, anti-TrkB, and anti-GAPDH (Abcam, Cambridge, UK).
+ Open protocol
+ Expand
10

Immunohistochemical Analysis of Brain Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
The primary antibodies used were: anti-c-Fos (1:2000, rabbit, Santa Cruz, catalog number sc-52); anti-BDNF (1:100, rabbit, abcam, catalog number ab108383); and anti-TrkB (1:1000, rabbit, Biosensis, catalog number R-149-100). Fluorophore-conjugated secondary antibodies were purchased from Invitrogen. Antibodies were diluted in PBS with 10% NGS and 0.1% Triton X-100.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!