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42 protocols using pano 7 plex ihc kit

1

Multiplex IHC and RNAscope for Tissue Analysis

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Utilizing the multiplex IHC technique, we performed immunofluorescence staining of human FFPE tissues with the PANO 7-plex IHC kit (catalog number 0004100100, Panovue, Beijing, China). The procedure involved the sequential application of various primary antibodies, including those specific for GZMK (HPA063181, Sigma-Aldrich, St. Louis, MO, USA) and TPIT (ZM-0318, ZSGB-Bio, Beijing, China). Following this, slides were incubated with a horseradish peroxidase-conjugated secondary antibody and subsequently underwent tyramide signal amplification (TSA). After each TSA step, the slides were subjected to microwave treatment. Once all human antigens were appropriately labeled, nuclei were stained using 4′-6′-diamidino-2-phenylindole (DAPI, provided by Sigma-Aldrich).
Hybridizations using the RNAscope method were performed according to the manufacturer’s protocol (Advanced Cell Diagnostics) using the RNAscope 2.5 HD Duplex Reagent Kit (322,430). Probes used were Hs-PBK (551,871).
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2

Multiplex Immunofluorescence Analysis of SCLC Markers

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FFPE Sections (4-μm thick) were mounted and routinely stained with H&E for histopathological examination (Supplementary Fig. S1a). Multiplex immunofluorescence was applied to identify the expression patterns of key transcriptomic regulators of SCLC, including ASCL1 (Abcam, ab211327), NEUROD1 (Abcam, ab60704) and POU2F3 (Novus Biologicals, NBP1–83966). Multiplex immunofluorescence staining was performed using a PANO 7-plex IHC kit (Panovue, Cat# 0004100100), as previously described.65 In brief, the FFPE sections were subjected to deparaffinization, rehydration, and antigen retrieval according to the protocol supplied by the manufacturer. After blocking, the sections were incubated with a primary antibody and then a secondary antibody (polymer HRP-anti-mouse/Rabbit IgG). Other primary antibodies were sequentially applied by repeating the previous procedures. Nuclei were stained with DAPI (Sigma-Aldrich, D9542) after all the human antigens had been labeled. Multispectral images were obtained by scanning the stained slides with the Mantra System (PerkinElmer, Waltham, Massachusetts, US) and analyzed using inForm image analysis software (PerkinElmer, Waltham, Massachusetts, US) (Fig. 4c).
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Multiplex Immunofluorescence Staining Protocol

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As previously described, mIF staining was conducted using a PANO 7-plex IHC kit (Panovue, Beijing, China) (31 (link)). Antibodies used included anti-panCK (CST4545, Cell Signaling Technology, Danvers, MA, USA), anti-CD8 (CST70306), anti-CD56 (CST3576), anti-CD68 (BX50031, Biolynx, China), and anti-HLA-DR (ab92511, Abcam, UK). The stained slides were scanned, and a single stacked image was constructed using the Mantra System (PerkinElmer, Waltham, MA, US). Furthermore, images of the sections were reconstructed based on a spectral library of multispectral unmixing. Finally, various cells were counted using the InForm image analysis software (PerkinElmer).
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Multiplex Immunohistochemistry Analysis of Lymph Nodes

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Six pairs of lymph nodes were randomly selected, formalin-fixed, paraffin-embedded, and subjected to multiplex immunohistochemistry (mIHC). The mIHC was performed by using a PANO 7-plex IHC kit (Panovue, China) following the standard protocol [16 (link)]. Immune cell panels included the following antibodies: CD3 (1 : 200, Abcam, ab16669), CD8A (1 : 300, Cell Signaling Technology, 70306), Foxp3 (1 : 500, Abcam, 20034), PD1 (1 : 50, Cell Signaling Technology, 43248), and CD163 (1 : 100, Cell Signaling Technology, 93498). The slides were incubated with the primary antibodies, followed by 0.3% hydrogen peroxide solution for blocking endogenous peroxidase. DAPI (Sigma-Aldrich) was used for nuclear counterstaining. Images were acquired and analyzed by using a Mantra System (PerkinElmer) and inForm image analysis software (PerkinElmer), respectively.
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Multiplex Immunofluorescence Analysis of PD-L1, Immune Cells, and Tumor Microenvironment

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PD-L1 expression was detected using the PD-L1 IHC 22C3 pharmDx assay (Agilent Technologies, Santa Clara, CA, USA) and was assessed by combined positive score (CPS), where CPS ≥1 was considered as positive. The mIF staining was performed using PANO 7-plex IHC kit (Panovue, Beijing, China), according to the manufacturer’s instructions as described previously (17 (link)). Briefly, CD8 marker was used to identify T cells. The natural killer (NK) cells were divided into CD56dim (weak staining) and CD56bright (strong staining) according to the intensity of membrane staining by CD56 antibody. Tumor-associated macrophages (TAMs) were identified by CD68 and HLA-DR and were divided into TAM1 (CD68+ and HLA-DR+) and TAM2 (CD68+ and HLA-DR). S100 staining was used to define the tumor center and the invasive margin. The stained slides were scanned and built a single stack image subsequently by the Mantra System (PerkinElmer, Waltham, MA, USA). The reconstruction of images was performed using inForm image analysis software (PerkinElmer) for multispectral unmixing to remove autofluorescence.
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GD2, CD8, and CD163 Multiplex Imaging

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Multiplex immunofluorescence staining of GD2, CD8, and CD163 in pre- and post-GD2 specific 4SCAR-T cell infusion specimens from Patient 01 was performed using a PANO 7-plex IHC kit (Panovue) as previously described [31 (link)]. After incubation with anti-GD2 (catalog no. 554,272; BD Biosciences), anti-CD8 (catalog no. 70,306; Cell signaling Technology), and anti-CD163 (catalog no. 93,498; Cell Signaling Technology) primary antibodies, horseradish peroxidase-conjugated secondary antibodies and a tyramide signal amplification fluorescence kit (Panovue) were applied. Nuclei were stained with DAPI, followed by scanning and multispectral images capture using the PanoVIEW vs200 slide scanner (Panovue), equipped with an Olympus 20×lens.
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7

Multiparametric Tumor Microenvironment Analysis

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IHC was performed using an anti-CHAF1A antibody (ab126625), with a 2-step protocol. Specialized pathologists calculated the number of positively stained cells and the staining intensity to create grade categories under a microscope. A previously reported semi-quantitative method was used to assess IHC scores [22 (link)]. mIF staining was conducted using the PANO 7-plex IHC kit (Panovue, Beijing, China), section images were reconstructed using the Mantra System (PerkinElmer, Waltham, MA, USA), and quantification of cells in the images was performed using the inForm image software (PerkinElmer). Anti-CD8 (CST70306; Cell Signaling Technology, USA), anti-CD56 (CST3576), anti-CD68 (BX50031; Biolynx, China), anti-HLA-DR (ab92511), anti-panCK (CST4545), and anti-S100 (ab52642) antibodies were used for staining.
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8

Lung Tissue Analysis: TUNEL and IHC

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Lung samples obtained from infected and mock-infected mice were fixed with 4% paraformaldehyde, embedded in paraffin and cut into sections of 3.5 μm, and further used for TUNEL assay or processed to IHC. TUNEL assay was performed using an In Situ Cell Death Detection Kit (Roche) according to the manufacturer’s protocols. Briefly, the sections were deparaffinized, rehydrated, and permeabilized with proteinase K. The sections were then incubated with a mixture of TdT and dUTP (2 : 29), followed by incubation with DAPI (Beyotime, China) solution for 10 min. For IHC analysis, the indicated antibodies were used as primary antibodies, then sections were incubated with secondary antibody (Rabbit/Mouse Envision, Dako, Denmark), followed by visualizing with a detection kit (DAB, Dako, Denmark).
The biopsy lung tissue was fixed with 4% paraformaldehyde, paraffin-embedded and cut into sections of 5 μm. For routine histology, sections were stained with HE. Immunostaining was performed using PANO 7-plex IHC kit (Panovue, China) according to the manufacturer’s instructions. TUNEL assay was conducted as described above.
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9

Multiplex Immunohistochemistry Staining Protocol

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mIHC staining was conducted using a PANO 7-plex IHC kit (Panovue, Beijing, China). The slides were blocked and then incubated sequentially with CD8 (C8/144B, Cell Signaling Technology, Danvers, Massachusetts, USA), PD-L1 (E1L3N, Cell Signaling Technology), and SOX10 (EPR4007, Abcam, Cambridge, UK). The nuclei were counterstained with 4′,6-diamidino-2-phenylindole (Sigma-Aldrich, St. Louis, Missouri, USA). Multispectral images were obtained using a Mantra System (PerkinElmer, Waltham, Massachusetts, USA), and digital images were analyzed using inForm image analysis software (PerkinElmer).
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10

Multiplex IHC Analysis of SFRP4+ Cells

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FFPE tissue sections were stained with the PANO 7‐plex IHC kit (Panovue) according to the manufacturer's instructions, including deparaffinisation with xylene, hydration with gradient ethanol, antigen retrieval with sodium citrate buffer (0.01 M, pH = 6.0), removal of endogenous peroxidase with H2O2, blocking tissues with 10% goat serum and staining with antibodies and TSA‐RM. The next cycle of staining started with antigen retrieval and was stopped with TSA labelling. The antibodies used included CD4 (ab133616, 1:500; Abcam) with Opal 620, CD8 (C8/144B, 1:200; CST) with Opal 690, and CD20 (ab78237, 1:2000; Abcam) with Opal 520. The antibodies used included CD45 (20103‐1‐AP, 1:2000; Proteintech) with Opal 570, SFRP4 (15328‐1‐AP, 1:200; Proteintech) with Opal 620, and IgG (EPR4421, 1:500; Abcam) with Opal 520. Then, all slides were scanned and analysed using the Vectra Automated Quantitative Pathology Imaging System (Vectra Polaris featuring MOTiF™). Finally, the percentage of SFRP4+ AFCs around the Tumour area was analysed in the HALO software (version 3.3). Specifically, the typical tumour area were identified based on DAPI staining, the distance and the area of 0–2, 2–4 and >4 mm from the tumour area were delineated, and the percentage of SFRP4+ AFCs in DAPI+ cells were calculated and statistical analysed.
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