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13 protocols using recombinant il 2

1

CAR T-cell Activation and Characterization

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Two days post-transduction with TOP-CAR constructs, cells were resuspended to 2–2.5 × 106 cells/mL in RPMI 1640 complete medium supplemented with 100 U/mL recombinant IL-2 (Roche, Basel, Switzerland) and further activated for 3 days with anti-CD2/anti-CD3/anti-CD28 beads (Miltenyi Biotec, Bergisch Gladbach, Germany) at a bead-to-cell ratio of 1:1 and maintained at 1 × 106 cells/mL in RPMI 1640 complete medium supplemented with 100 U/mL of recombinant IL-2 (Roche, Basel, Switzerland).
CAR expression was detected at 4 and 10 days post-transduction with a fluorescein isothiocyanate (FITC)-tagged anti-streptavidin antibody (GenScript, Piscataway, NJ, USA) according to the manufacturer’s protocols. Briefly, 100,000–200,000 cells per transduction were pelleted at 300 × g at room temperature for 10 min in a V-bottom plate. Cells were washed once in PBS before incubation for 30 min at 37°C in blocking buffer (3% bovine serum albumin in PBS). Cells were spun down and resuspended in 100 μL of blocking buffer with 1.5 μg/mL antibody and incubated for 1 h in at 37°C. Cells were pelleted and washed once in wash buffer (0.05% Tween 20 in PBS), fixed in 1% paraformaldehyde, and immediately read by flow cytometry.
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2

MHC-I Epitope Prediction and T-cell Activation

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A7(74) SFV genome was analysed in all three reading frames using peptide prediction websites (http://tools.iedb.org/mhci/, http://www.cbs.dtu.dk/services/HLArestrictor/)67 (link) and peptide sequences were generated based on binding affinity prediction to mouse MHC-I (H2-Kb and H2-Db). Peptides (GenScript USA Inc) were resuspended up to 1 mM with DMSO, aliquoted and stored at −20 °C. Enriched T cell populations from brain and spleen were stimulated with 1 μM of the selected peptide for 5 hrs at 37 °C, 5% CO2 in the presence of 1000 U/mL recombinant IL-2 (Roche, Basel, Switzerland) and 1 μL/mL Golgi-Plug (BD Biosciences, San Jose, CA, USA) as described44 (link). Cells were washed and stained with CD8-PerCP Cy5.5 (clone 53-67, BD Biosciences 551162) for 30 mins on ice, fixed, permeabilised and stained for cytokines (IFN-γ-FITC, TNF-α-APC and IL-2-PE (Biolegend, San Diego, CA, USA)). Samples were acquired using BD Canto II, and the total cytokine production was calculated by subtracting background fluorescence using no peptide controls. PMA/ionomycin stimulated cells were used as positive controls. The known sequence of the Peptides giving positive results were blasted against the NCBI database (https://blast.ncbi.nlm.nih.gov/Blast.cgi) to determine the position of the peptide in SFV proteome.
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3

HIV-1 Infection of Activated Primary CD4+ T-cells

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Freshly isolated primary CD4+ T-cells were activated using anti-CD3/anti-CD28 mAb coupled to magnetic beads (Miltenyi Biotech) or PHA (3 μg/mL) for 72 h prior to infection with an HIV-1 strain in which the HIV-1 envelope is deleted. These envelope-defective viruses were VSV-G pseudotyped. In our study, we also infected CD4+ T-cells with a molecular HIV clone (HIV-1NL4/3), primary isolates (HIV-1 SHM-1), and lab-adapted strains (HIV-1SF162).
The N153F mutation in Gag was created using the Lightning Site-Directed Mutagenesis Kit (Agilent Tech) according to the manufacturer’s protocol. The primers used were:
5’- GGTACATCAGGCCATATCACCTAGAACTTTATTTGCATGGGTAAAAGTA-3’ and 5’-TAC TTTTAC CCATGCAAATAAAGTTCTAGGTGATATGGCCTGAT-GTACC-3’. Because the mutation will not lead to viable capsid proteins in the virus, we provided a capsid for the virus particle in trans using the ΔR8.2 packaging vector as previously described [52 (link)].
Infection was performed by spin-inoculation with a TCID50 = 1 as described by O’Doherty et al [53 (link)]. Following infection, cells were cultured in RPMI complete medium with 200 U/mL recombinant IL-2 (AIDS Research and Reference Reagent Program, Division of AIDS, NIAID, NIH, deposited by Dr. Maurice Gately, Hoffmann-La Roche Inc, Nutley, NJ).
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4

Culturing and Activating Cell Lines

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HeLa and Caco-2 cells (ATCC, Rockville, MD) were cultured and/or differentiated as previously described [23] . Human peripheral blood mononuclear cells (PBMCs) were isolated from healthy blood donors (New York Blood Center, Long Island City, NY) and the 3×3 stimulation was performed as previously described by Trkola et al [24] (link). After activation, PBMCs were grown in fresh stimulation media consisting of RPMI 1640 (Life Technologies), 10% FBS, antibiotics at a final concentration of 50 U/ml of penicillin, 50 µg/ml streptomycin and recombinant IL-2 at 20 U/ml (Roche, Indianapolis, IN).
L. jensenii, L. crispatus and C. albicans strain SC5413 (ATCC) were propagated as previously described [23] .
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5

HSV-2 and SHIV Infection of Vaginal Tissues

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HSV-2 stocks were propagated in Vero cells (American Type Culture Collection [ATCC] Manassas, VA), titered by plaque formation on Vero cells, and aliquots stored at −80°C [41] . RMs vaginal biopsies were equalized in size using 3 mm skin biopsy punches (Fisher Scientific, Waltham, MA) and infected in duplicates or triplicates with 2×107 pfu/mL of HSV-2 in absence or presence (uninfected control) of 125 µg/mL acyclovir (Calbiochem, Billerica, MA) for 3 hours in a 96 well plate. Tissues were extensively washed with PBS and placed into a hole in a 24-well 3 µm pore size and 6.5 mm diameter trans-well insert (Corning, NY) using 2 mm skin biopsy punches (Fisher Scientific), with the mucosa facing the upper chamber. After either 18 hours or 3 days the tissue was digested and the cellular phenotype was determined by multi-color flow cytometry (LSRII). After 18 hours (T cells) and 3 days (DCs), the cells that migrated to the bottom chamber were collected and the cellular phenotype was determined by multi-color flow cytometry. In the experiments with SHIV, each vaginal punch biopsy was infected with 3000 TCID50 of SHIV162p3 in the presence of 1 µg/mL PHA (Sigma-Aldrich, St. Louis, MO), and 50 U/mL recombinant IL-2 (Roche, South San Francisco, CA) after the 3 hour HSV-2 infection. After 18 hours, the tissues were extensively washed with PBS and cultured for an additional 48 hours.
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6

Activation and Expansion of Human NK Cells

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Human NK cells were isolated from peripheral blood of healthy U.S. donors by negative selection (Stemcell Technologies). NK cells were resuspended in Iscove's modified Dulbecco's medium (IMDM; Gibco) supplemented with 10% human serum (Valley Biomedical) and used within 4 days. To obtain IL-2-activated NK cells, freshly isolated NK cells were co-cultured with irradiated autologous feeder cells in OpTimizer (Invitrogen) supplemented with 10% purified IL-2 (Hemagen), 100 units/mL recombinant IL-2 (Roche), and 5 μg/mL phytohemagglutinin (PHA, Sigma) and expanded in the same medium without PHA and feeder cells. The human erythroleukemia cell line K562 (American Type Culture Collection, Manassas, VA) were cultured in RPMI 1640 supplemented with 2 mM L-glutamine and 10% fetal bovine serum (FBS; Atlanta Biologicals).
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7

PBMC Activation Assay Protocol

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Short term cell lines were used for tetramer and ICS analyses. 2-3x106 PBMCs were stimulated with peptide and co-stimulatory purified mouse anti-human antibody CD28 (1μg/ml, BD Bioscience) in 1ml hR10 at 37 degrees Celsius. Media was changed and recombinant IL-2 (50U/mL, Roche) was added at days 3, 7 and 10. Cells were harvested on day 13 and left to rest overnight in RH10 prior to ICS and tetramer staining assays.
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8

Polyclonal Activation of T Cells

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Activated T cells were obtained by polyclonal stimulation of LN cells with plate-bound anti-CD3 (1 μg/ml, eBiosciences, Cat# 16-0032-85) and plate-bound anti-CD28 (5 μg/ml, eBiosciences, Cat# 16-0281-86) in complete T cell medium supplemented with 20 U/ml recombinant IL-2 (Roche, West Sussex, UK) for 7 days at 37°C. Antibody coating of tissue culture plates was performed by incubating antibodies in 200 μL of Tris buffer (pH 8.5) at 37°C for 1 hour.
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9

Culturing and Activating Primary CD4+ T Cells

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HEK293T cells and Jurkat T cells were obtained from American Type Culture Collection (ATCC). HeLa TZMbl were obtained through the NIH HIV Reagent Program, Division of AIDS, NIAID, NIH, kindly provided by John C. Kappes. Primary CD4+ T cells were purified from freshly isolated PBMCs from healthy donors. PBMCs were isolated by density gradient using Lymphoprep (Axis-Shield) and CD4+ T cells purified by negative selection using the Dynabeads Untouched Human CD4+ T Cell Isolation kit (Invitrogen) according to the manufacturer’s instructions. CD4+ T cells were activated using Human T-Activator CD3/CD28 Dynabeads (Invitrogen) according to the manufacturer’s instructions and maintained in RPMI GlutaMax supplemented with 10% FCS and 30 U/mL recombinant IL-2 (Roche).
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10

IL-27 Pretreatment Enhances Anti-HIV Activity

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The PHA-stimulated CD4+ T cells were pretreated with IL-27 prior to HIV infection. Briefly, the cells were cultured with either 20 U/ml of recombinant IL-2 (Roche, Mannheim, Germany) alone (control cells) or IL-2 with 100 ng/ml of recombinant IL-27 (R&D Systems, Minneapolis, Minnesota, USA) (treated cells) for 3 days in RP-10 at 2 × 106 cells/ml. After incubation, the cells were washed with prewarmed RP-10 medium at 500 × g for 5 min for three times, and then maintained in RP-10 with 20 U/ml of IL-2. Panabinostat (Selleckche, Houston, Texas, USA) treatment was performed as follows: PHA-stimulated CD4+ T cells were pretreated with 35 nmol/l Panabinostat for 24 h. Following the pretreatment, CD4+ T cells were treated with IL-2 or IL-2 with IL-27 for 3 days and then cells were washed as described above.
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