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15 protocols using syringe filter

1

Lipase-Catalyzed Transesterification of Oils

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Pseudomonas fluorescens lipase (PFL, ≥ 20.000 IU/g at 55 °C, pH 8.0) was purchased from Sigma-Aldrich Co. (St. Louis, USA). Sunflower oil (Cocinero, Molinos Río de la Plata S.A., Argentina), soybean oil (Sojola, Aceitera General Deheza S.A., Argentina), pork fat (Paladini S.A., Argentina) and ethanol 96% v/v (Porta Hnos. S.A., Argentina), were purchased at local grocery stores. Waste frying oil was obtained from different domestic sources and filtered before being used. Acid oil from soapstock (soybean) was generously gifted by a local company (Louis Dreyfus Company, Argentina). Jatropha excisa oil was kindly donated by Dr. Fracchia (CRILAR-CONICET, La Rioja, Argentina). Other used reagents were: KH2PO4, K2HPO4 and KOH (Anedra), n-dodecylamine (Sigma-Aldrich, USA), n-hexane (analytical grade, Merck), isopropyl alcohol (Fluka), acetonitrile (analytical grade, Merck), tetraethyl orthosilicate (Aldrich) and milliQ water. Syringe filters (polypropylene, 25 mm diameter and 0.2 micron pore size) were supplied by VWR (USA).
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2

Quantifying Short-Chain Fatty Acids by GC-MS

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Collected samples were centrifuged at 17,000× g for 5 min at room temperature. The supernatants were filtered-sterilized at 0.22 µm using syringe filters (ref.514-0073, VWR, Leicestershire, UK) to remove E. coli K1 before analysis. Solid-phase microextraction (SPME) followed by gas chromatography coupled to mass spectrometry (GC–MS) was used to quantify the short-chain fatty acids (SCFA), following the protocol developed by Douny et al. [64 (link)] and described in Laforêt et al. [29 (link)].
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3

Synthesis of Hybrid Nanoparticles for Drug Delivery

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Chemicals: Ferric chloride hexahydrate (FeCl3·6H2O), ferrous chloride tetrahydrate (FeCl2·4H2O), sodium chloride (NaCl), potassium chloride (KCl), sodium hydrogenphosphate (Na2HPO4), potassium dihydrogen phosphate (KH2PO4), dopamine hydrochloride (DA∙HCl), bovine serum albumine (BSA), cetyl trimethylammonium bromide (CTAB), N-(3 dimethylaminopropyl)-N′-ethylcarbodiimide hydrochloride (EDC∙HCl), hydrochloric acid (HCl, 37%), sodium hydroxide (NaOH), and paclitaxel (PTX) were purchased from Sigma Aldrich (St. Louis, MO, USA). Oleic acid ≥85% and sodium oleate were purchased from Tokyo Chemical Industry (TCI), Tokyo, Japan. Sodium hyaluronate (5400 Da) was purchased from Lifecore Biomedical, Inc., Chaska, MN, USA.
Materials: Dialysis sacks were purchased from Sigma Aldrich (MWCO: 12,000 Da) (St. Louis, MO, USA) and from SpectrumLabs (Spectra/Por 3 Dialysis Tubing, MWCO: 3500 Da). Syringe filters (25 mm, 0.22 µm) were purchased from VWR International, Milan, Italy.
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4

Quantification of Citric Acid in Lime Juice

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Lime juice samples were centrifuged at 5000× g for 10 min at 4 °C, filtered using syringe filters (0.2 µm, VWR International, PR, USA) and diluted ten times with Milli-Q water for analysis. A HPLC method was developed using a 1200 series HPLC system equipped with a quaternary pump and a thermostatted autosampler (Agilent Technologies, Santa Clara, CA, USA). Citric acid was quantified in triplicate using a diode array detector (Agilent 1100/1200) monitored at 210 nm and an Aminex HPX-87H ion exclusion column at a controlled temperature of 55 °C. The analytical conditions were as follows: mobile phase 0.045 N H2SO4/acetonitrile (94:6; v/v), flow 0.3 mL/min, and detector temperature 35 °C [23 (link)].
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5

Anti-IL8 mAb Purification from CHO Cells

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Media containing anti-IL8 monoclonal antibody derived from CHO DP-12 culture was thawed before clarification via sequential filtration through 0.45 μm and 0.20 μm syringe filters (VWR, Dublin, Ireland). Clarified media was then passed through a HiTrap Protein A column (GE Healthcare, Dublin, Ireland) at a flow rate of 1.0 mL/min. Using PBS, the column was washed to remove unretained material followed by elution of the mAb by 100.0 mM L-arginine (Sigma Aldrich) at pH 3.5. The pH of the eluate was neutralized (pH 7.0–7.5) by adding 0.50 M Tris buffer followed by a buffer exchange into PBS using Amicon Ultra centrifugal units with a 10 kDa MWCO membrane (Sigma Aldrich). The IgG content was determined using a Bradford protein assay; subsequently, aliquots containing 100 μg of protein were stored at −30°C pending further analysis.
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6

Lipase-catalyzed Biofuel Production

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Pseudomonas Fluorescens lipase (PFL, ≥20,000 IU/g at 55 °C, pH 8.0) was purchased from Sigma-Aldrich Co. (St. Louis, USA) [27] .
Commercial sunflower oil (''Vicentin'' brand) was purchased at a local store. Waste frying oil was collected from different domestic sources and it was filtered before being used. Residual soybean oil was generously provided by Louis Dreyfus Company (Bahía Blanca, Argentina).
Other employed reagents were: KH 2 PO 4 , K 2 HPO 4 and KOH (Anedra); commercial bioethanol 96% v/v (Porta Hnos.), hydrochloric acid-HCl and sodium carbonate-Na 2 CO 3 (analytical grade, Cicarelli), nhexane and acetonitrile (analytical grade, Merck), isopropyl alcohol (Fluka), triblock copolymer Pluronic P123 and tetraethyl orthosilicate-TEOS (Aldrich), and milliQ water. Syringe filters (polypropylene, 25 mm diameter and 0.2 µm pore size) were supplied by VWR.
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7

Analytical Methods for Wastewater Characterization

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Samples were filtered (0.45 µm syringe filters -VWR) and pH recorded (Jenway 3540, UK). Mixed liquor suspended solids were analysed according to standard methods (Eaton, 2005) . Merck cell test kits were used to determine the concentrations of NO 2 --N, NO 3 --N, NH 4 + -N, SO 4 2-and soluble chemical oxygen demand (sCOD) following the manufacturer's instructions. Thiocyanate and phenol were determined colorimetrically at a wavelength of 465 and 510 nm, respectively, using a Jenway 6300 spectrophotometer (Staffordshire, UK). Thiocyanate was determined by a method based upon the reaction of thiocyanate with iron (III) to produce an orange-red colour based on a red complex (The Institution of Gas Engineers, 1971) while phenol was determined using 4-aminoantipyrene based upon ISO 6439:1990 (ISO, 1990).
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8

Isolation and Preparation of Bone-Derived Biomaterials

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Bone was obtained from adult pigs within 6 hours postmortem (Fleischerei Leopold Hödl, Vienna, Austria). Bone chips were harvested from the mandible with a bone scraper (Hu‐Friedy, Rotterdam, the Netherlands). Bone chips were washed with serum‐free Dulbecco's modified Eagle medium (DMEM) supplemented with antibiotics (Invitrogen Corporation, Carlsbad, California, USA). For ABL preparation, 5 g of wet bone chips were incubated while being stirred with 50 mL of 0.1 N HCl (10% weight/volume) at room temperature. ABL was harvested after 16 hours, centrifuged at 1200 RPM (358 g‐force) for 6 minutes and pH neutralized. After another centrifugation at 1200 RPM (358 g‐force) for 6 minutes, ABL was filtered sterile using a 0.2 μm syringe filter (VWR International, Pennsylvania, USA) and kept frozen at −20°C. The stocks were thawed immediately before each experiment. For bone‐conditioned medium (BCM) preparation, 5 g of bone chips were harvested from the mandible and incubated with 10 mL serum‐free culture medium DMEM (50% weight/volume) supplemented with antibiotics (Invitrogen Corporation). BCM was harvested after 24 hours of incubation at 37°C in a humidified atmosphere at 5% carbon dioxide. BCM was filtered sterile using a 0.2 μm syringe filter (VWR International, Pennsylvania, USA) and kept frozen at −20°C. The stocks were thawed immediately before each experiment.
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9

Generating AAV Virus for FLARE Experiments

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AAV virus supernatant was used to transduce neuron cultures for FLARE experiments. To generate viruses, HEK 293T cells were transfected in a T25 flask, at 70–90% confluence. For each virus, we combined 0.875 μg of viral DNA (plasmid P62-P65, from the Plasmid table), 0.725 μg AAV1 serotype plasmid (plasmid P72), 0.725 μg AAV2 serotype plasmid (plasmid P73), and 1.75 μg helper plasmid pDF6 (plasmid P74) with 20 μL PEI max and 200 μL serum-free DMEM [39 (link)]. The transfection mix was incubated for 15 min at room temperature, and added to 5 mL of complete media. The media of the T25 flask was replaced with the mixture. After incubation for 48 h at 37 °C, the supernatant (containing secreted AAV virus) was collected and filtered through a 0.45-μm syringe filter (VWR). AAV virus was aliquoted into sterile Eppendorf tubes (0.5 mL/tube), flash frozen in liquid nitrogen and stored at −80 °C.
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10

Lentivirus Production in HEK293T Cells

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HEK293T cells were transfected at 60–90% confluence. For a T25 flask, 2.5 μg viral DNA, 0.25 μg pVSVG, and 2.25 μg delta8.9 lentiviral helper plasmid were combined with 200 μL serum-free DMEM and 30 μL PEI max (Polysciences, Cat# 24765, polyethylenimine HCl Max in H2O, pH 7.3, 1 mg/mL), and incubated for 15 min at room temperature. Then 5 mL DMEM supplemented with 10% FBS was added and mixed. Media was aspirated from the HEK293T cells and the 5 mL DNA mix was added gently to the cells. HEK293T cells were incubated for 48 hr at 37°C and then the supernatant (containing secreted lentivirus) was collected and filtered through a 0.45 μm syringe filter (VWR). Collected lentivirus was divided into aliquots in 0.5 mL sterile eppendorf tubes, flash frozen in liquid nitrogen, and stored at −80°C.
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