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Xf24 flux analyzer

Manufactured by Agilent Technologies
Sourced in United States

The XF24 Flux Analyzer is a laboratory instrument designed to measure cellular metabolic activity. It provides real-time, quantitative data on oxygen consumption rate (OCR) and extracellular acidification rate (ECAR) of cells in a multi-well plate format.

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37 protocols using xf24 flux analyzer

1

Mitochondrial Bioenergetics in Nerve Tissue

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Mitochondrial bioenergetics was measured with the XF24 Flux Analyzer (Agilent Technologies Inc, Santa Clara, CA) as previously described (Krukowski et al., 2017 (link); Ma et al., 2019 (link)). Briefly, tibial nerves were freshly isolated and put into the islet capture XF24 microplate (Seahorse Bioscience, North Billerica, MA) in Seahorse XF base media (#102353-100, Agilent technologies) supplemented with 5 mM glucose (#G7021, Sigma-Aldrich), 0.5 mM sodium pyruvate (#25-000-CI, Corning, Manassas, VA), and 1 mM glutamine (#G8540, Sigma-Aldrich). Oligomycin A (#75351, Sigma-Aldrich, final concentration is 12 μM), Carbonyl cyanide 4-(trifluoromethoxy)phenylhydrazone (FCCP; #C2920, Sigma-Aldrich , final concentration is 20 μM), and rotenone (#R8875, Sigma-Aldrich, final concentration is 20 μM) and antimycin A (#A8674, Sigma-Aldrich, final concentration is 20 μM) were used to determine mitochondrial respiratory properties. Oxygen consumption rate (OCR) and extracellular acidification rate (ECAR) were normalized to protein contents and were used as indicators for the statuses of mitochondrial oxidative phosphorylation and glycolysis, respectively.
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2

Mitochondrial Respiratory Function in DRG Neurons and Synapsomes

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Mice were sacrificed one month after completion of the treatment cycles. XF24 Flux Analyzer (Agilent Technologies Inc, Santa Clara, CA) were used for measurement of mitochondrial oxygen consumption rate. DRG neurons from 6 mice per group[39 (link); 42 (link)] or synapsomes from 8 mice per group[40 (link)] were isolated and tested as described previously.
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3

Synaptosomal Oxygen Consumption Assay

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Synaptosomes were isolated as previously described [11 (link)]. Briefly, one hemisphere of the brain was homogenized (10% w/v) into 0.32 M sucrose solution in HEPES buffer using a glass Dounce homogenizer. The lysate was centrifuged at 1000×g for 10 min at 4 °C. The supernatant was mixed with equal volume of 1.3 M sucrose in HEPES buffer and centrifuged at 20,000×g for 30 min at 4 °C. The synaptosomal pellet was then resuspended in XF media (Agilent Technologies, Santa Clara, CA) supplemented with 5.5 mM glucose, 0.5 mM sodium pyruvate, and 1 mM glutamine. Oxygen consumption rate (OCR) was measured with an XF24 Flux Analyzer (Agilent Technologies). Oligomycin (6 μM), carbonyl cyanide 4-(trifluoromethoxy)phenylhydrazone (FCCP, 6 μM), and rotenone/antimycin A (2 μM each) (Sigma-Aldrich) were injected sequentially during the assay. An assay cycle of 2-min mix, 3-min wait, and 2-min measure was repeated three times for baseline rates and after each port injection. Basal respiration, ATP-linked respiration, maximal and spare respiratory capacity were determined as described previously [11 (link)].
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4

Synaptosomal Respiration Profiling

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Synaptosomes were isolated as previously described 27 (link). Briefly, one hemisphere of the brain (n = 9 mice/group) was homogenized (10% w/v) into 0.32 M sucrose solution in HEPES buffer using a glass Dounce homogenizer. The lysate was centrifuged at 1000 ×g for 10 min at 4 °C. The supernatant was mixed with equal volume of 1.3 M sucrose in HEPES buffer and centrifuged at 20,000 ×g for 30 min at 4°C. The synaptosomal pellet was then resuspended in XF media (Agilent Technologies, Santa Clara, CA) supplemented with 5.5 mM glucose, 0.5 mM sodium pyruvate, and 1 mM glutamine. Oxygen consumption rate (OCR) was measured with an XF24 Flux Analyzer (Agilent Technologies). Oligomycin (6 μM), carbonyl cyanide 4-(trifluoromethoxy)phenylhydrazone (FCCP, 6 μM), and rotenone/antimycin A (2 μM each) (Sigma-Aldrich) were injected sequentially during the assay. An assay cycle of 2 min mix, 2 min wait, and 2 min measure was repeated three times for baseline rates and after each port injection. Basal respiration, ATP-linked respiration, maximal and spare respiratory capacity were determined as previously described 27 (link).
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5

Mitochondrial Function Assessment in Mice

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Mice were killed 1 month after completion of the treatment cycles. XF24 Flux Analyzer (Agilent Technologies Inc, Santa Clara, CA) was used for measurement of mitochondrial oxygen consumption rate. Dorsal root ganglia neurons from 6 mice per group39 (link),42 (link) or synaptosomes from 8 mice per group40 (link) were isolated and tested as described previously.
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6

Mitochondrial Respiration in pt-iPSC-CMs

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Mitochondrial respiration in pt‐iPSC‐CMs was measured using the Seahorse Bioscience XF24 Flux Analyzer with XF Cell Mito Stress Test Kit (Agilent Technologies) following the manufacturer's instructions. Briefly, cells seeded on XF24 microplates treated with Tmab or DOX. Oxygen consumption rate (pmol/min) was normalized to baseline OCR and a total cell count of each well was carried out using the CyQuant Cell Proliferation assay (Thermo Fisher Scientific).
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7

Mitochondrial Function Assessment in BAT and WAT

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Mitochondrial function was assessed using the XF24 Flux analyzer (Agilent). Briefly, oxygen consumption rates (OCR) and extracellular acidification rates (ECAR) were assessed using freshly isolated mouse BAT, iWAT and eWAT. The tissue was rinsed with non-buffered KHB media containing 111 mM NaCl, 4.7 mM KCl, 2 mM MgSO4, 1.2 mM Na2HPO4, 0.5 mM carnitine and 2.5 mM glucose; they were then cut into pieces (~10 μg) and washed extensively. Then, each piece was placed into a single well of an XF24 Islet plate (Agilent) and covered with a customized screen that allowed free perfusion while minimizing tissue movement. KHB buffer was added to each well, and OCR was measured. For BAT, basal respiration was first measured and then pyruvate (5 μM) was added as substrate. For WAT, basal respiration was recorded before oligomycin (10 μM) was added to inhibit ATP synthesis. FCCP (20 μM) was then supplied to artificially uncouple the mitochondria. Rotenone (3 μM) and Antimycin A (12 μM) were added simultaneously to inhibit complexes I and III of the electron transport chain respectively.
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8

Measuring Mitochondrial Bioenergetics in Nerves

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Mitochondrial bioenergetics were measured with the XF24 Flux Analyzer (Agilent Technologies Inc, Santa Clara, CA) as previously described[32 (link);40 (link)]. For measurement of axonal mitochondrial bioenergetics, 10 mm sections of tibial nerves were freshly isolated and placed into the islet capture XF24 microplate (Seahorse Bioscience, North Billerica, MA) in XF media supplemented with 5 mM glucose, 0.5 mM sodium pyruvate, and 1 mM glutamine[32 (link)]. Oxygen consumption rate (OCR) and extracellular acidification rate (ECAR) were measured and normalized to total protein contents of each individual nerve, and were used as indicators of mitochondrial bioenergetic status.
DRG neurons were isolated as described previously[40 (link);43 (link)] and plated in XF24 microplate and cultured overnight in Ham’s F-10 media (Corning Inc., Corning, NY) supplemented with N2 supplement (Thermo Fisher Scientific, Waltham, MA). On the day of assay, media was changed to XF media supplemented with 5 mM glucose, 0.5 mM sodium pyruvate, and 1 mM glutamine for OCR measurement. Carbonyl cyanide-p-trifluoromethoxyphenylhydrazone (FCCP;4 μM) and Rotenone and Antimycin A (2 μM each) (Sigma-Aldrich) were used to determine mitochondrial respiratory properties. The results were normalized to the protein contents of each well.
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9

Intracellular Metabolite Profiling of Cancer Cells

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After removing the media, cells were washed with 0.9% NaCI and quenched with 100% cold methanol, followed by the addition of isovolumetric water. We scraped the cells thoroughly and transferred into an Eppendorf tube containing 400 μL chloroform. Next, cells were vibrated at 1400 rpm for 20 min, followed by centrifugation at 16,100 × g for 5 min. Samples were then dried at a low temperature under vacuum to avoid metabolite degradation. The extracted intracellular metabolites were analyzed by gas chromatography and time-of-flight mass spectrometry, provided by BioMaker (China) as a service. We determined glycolytic capacity of cancer cells by using the Glucose Uptake Colorimetric Assay Kit (Biovision), Lactate Colorimetric Assay Kit (Biovision), and ATP Assay Kit (Promega), according to the manufacturers’ instructions. Glucose-induced ECAR was monitored by the Seahorse XF24 Flux Analyzer as previously described [34 (link)]. Cells were first seeded in a XF24 well plate and cultured overnight. Then the cells were washed with Seahorse buffer, followed by sequentially injecting 10 mM glucose, 1 µM oligomycin, and 80 mM 2-deoxyglucose. ECAR measurements were normalized to the number of cells per well.
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10

Measuring Cellular Respiration via Flux

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OCR was measured using the XF24 Flux Analyzer (Seahorse Bioscience) as described (Teperino et al., 2012 (link)). For details see Extended Experimental Procedures.
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