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Alexa fluor 488 labeled anti rabbit igg

Manufactured by Thermo Fisher Scientific
Sourced in United States, Japan

Alexa Fluor 488-labeled anti-rabbit IgG is a secondary antibody conjugated with the fluorescent dye Alexa Fluor 488. It is designed to bind to rabbit primary antibodies and can be used for detection and visualization purposes in various immunoassays and microscopy applications.

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21 protocols using alexa fluor 488 labeled anti rabbit igg

1

Examining neural responses to Kiss1 treatment

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Effect of Kiss1 treatment on neural activities in the habenula and dopaminergic neurons were examined by expression of neural activity marker, npas4a expression, which were examined in the brain of AB-wild type or Tg(dat:EGFP) fish, respectively. The whole brain (n = 6 fish/group) was dissected 30-min after the Kiss1 administration and fixed in buffered 4% paraformaldehyde for overnight at 4 °C and then expression of npas4a were examined by in situ hybridization. For npas4a mRNA expression in the habenula, coronal sections (10 µm) (n = 6 for control and Kiss-treated) of wild-type AB male were hybridized with DIG-labelled npas4a riboprobes (737nt, GenBank accession number: NM_001045321) for 16 h at 55 °C. DIG-labelled napas4a mRNA was detected with either anti-DIG-AP or anti-DIG-POD antibody (Roche) followed by chromogenic development with NBT/BCIP or amplification using TSA Plus Cyanine 3 System (Perkin Elmer/AKOYA Biosciences), respectively. After TSA amplification of npas4a mRNA signals, EGFP signals were further enhanced with a rabbit anti-GFP antibody (1:500 dilution, Millipore Cat# AB3080, RRID:AB_91337) followed by incubation with Alexa Fluor 488-labeled anti-rabbit IgG (1:500 dilution, Thermo Fisher Scientific).
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2

Immunofluorescence Analysis of Oxidative Stress

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Cells were grown on glass coverslips placed in the 24-well culture plate. After designated treatments, cells were followed by fixation with 4% formaldehyde and permeabilization with 1% Triton X-100. Fixed cells were washed with PBS and blocked in 5% BSA, and then incubated with primary antibodies (Rabbit anti-MDA, Mouse anti-4HNE, Mouse anti-TFR, Rabbit anti-γ-H2AX) at 4 °C overnight. After washing twice with PBS, Alexa Fluor 488-labeled anti-rabbit IgG and Alexa Fluor 594-labeled anti-mouse antibody (Thermo, Waltham, MA) were added on the glass coverslips for 1 h, nucleus was stained with DAPI. Subsequently, monolayer cell images were observed and recorded under a laser scanning confocal microscope.
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3

Cell Surface Labeling of Epitope-Tagged Proteins

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For live cell-surface labeling, stable cell lines or post-transfected cells (24 h) were incubated in phosphate-buffered saline (PBS) containing 15 mM NaN3 and polyclonal antibody to c-Myc tag (Cat No. C3956, Sigma-Aldrich) or polyclonal antibody to FLAG tag (Cat No. F7425, Sigma-Aldrich) at a 1∶200 dilution at room temperature for 1 h. The cells were then washed in PBS containing 15 mM NaN3 and incubated with PBS containing 15 mM NaN3 and Alexa Fluor 488-labeled anti-rabbit immunoglobulin G (IgG) (Cat. No. A-11070, Life Technologies) at a 1∶250 dilution at room temperature for 30 min. After washing with PBS containing 15 mM NaN3, the cells were observed under a fluorescence microscope (Leica Microsystems, Wetzlar, Germany). For permeabilized staining, stable cell lines or post-transfected cells (24 h) were fixed in 4% paraformaldehyde for 15 min at room temperature. The cells were blocked in 1% horse serum (Thermo Fisher Scientific Inc., Waltham, MA) diluted in PBS and incubated in 1% horse serum/PBS containing a 1∶500 dilution of polyclonal antibody to c-Myc tag or a 1∶500 dilution of polyclonal antibody to FLAG tag at room temperature for 1 h. The cells were then washed in PBS and incubated with PBS containing Alexa Fluor 488-labeled anti-rabbit IgG (1∶500) at room temperature for 30 min. After washing with PBS, the cells were observed under a fluorescence microscope.
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4

Immunofluorescence Staining of Muscle Tissues

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IF muscles were dissected from the thorax in 4% formaldehyde and were processed as described previously83 (link). Briefly, thoraces with IF muscles were fixed in 4% formaldehyde for 2 h at room temperature on a rotor. Samples were washed three times with PBS + 0.03% Triton X-100 (PBSTx) for 15 min and blocked for 2 h at room temperature or overnight at 4 °C using 2% bovine serum albumin (Sigma). Samples were incubated with and without respective primary antibody (Ab) at 4 °C overnight and later washed three times for 10 min with PBSTx and incubated for 2.5 h in respective secondary Ab at 25 °C or overnight at 4 °C. Samples were incubated for 40 min with Phalloidin TRITC (2.5 µg/ml) (P1951, Sigma, USA) and mounted using Prolong Glass Antifade Mountant with NucBlue stain and incubated for 20 min. Images were acquired with a ZEISS 780 confocal microscope and processed using the ImageJ and ZEN software (version 3.2.0.115) respectively. Antibodies used for the staining: Rabbit anti-salm-1 (1:500, gift from Dr. Tiffany Cook84 (link)), Rabbit anti-nmr1 (H15) (1:200, gift from Dr. James B. Skeath85 (link)), and Alexa-Fluor-488-labeled anti-rabbit IgG (1:500, Cat# A32731, Thermo Fisher Scientific).
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5

Indirect immunofluorescence for reovirus

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Monolayers were fixed with chilled methanol at −20°C for a minimum of 30 min, washed twice with PBS, blocked with 2.5% Ig-free bovine serum albumin (BSA)(Invitrogen), and incubated with polyclonal rabbit anti-reovirus serum at a 1:5000 dilution in PBS containing 0.25% Triton X-100 (TX-100) at room temperature for 30 min. Monolayers were washed twice with PBS and incubated with a 1:5000 dilution of Alexa Fluor 488-labeled anti-rabbit IgG (Invitrogen) in PBS containing 0.25% TX-100. The infected cells were visualized by indirect immunofluorescence using an Olympus IX71 microscope. Infected cells were identified by the presence of intense cytoplasmic fluorescence that was excluded from the nuclei. No background staining of uninfected control monolayers was observed. Reovirus antigen-positive cells were quantified by counting fluorescent cells in random fields in three independent wells at a magnification of 20×.
To assess infectivity of viral cores, cells in each well of a 96 well plate were transfected with 3.3 × 108 cores using 0.05 μl of Lipofectamine 2000 (Invitrogen). The transfection was incubated at 37°C for 12 h. Infectivity was assessed using indirect immunofluorescence as described above. Incubation of cells with an equivalent number of cores without addition of lipofectamine was used as a control and produced no reovirus-positive cells.
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6

Microglial NF-κB Activation and Ruffling

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Microglia were seeded onto glass coverslips in 24-well culture dishes and incubated overnight at 37 °C. Cultured microglia were serum-starved for 4 h, and then stimulated with 6-OAU, embelin, and capric acid at the indicated concentration. For inhibition of Gi-coupled signaling, microglia were pretreated with PTX (100 ng/mL, 4 h). Microglia were fixed in phosphate-buffered saline (PBS), pH 7.4, containing 4% paraformaldehyde for 10 min at room temperature. Immunostaining was performed according to our previous report [23 (link)], using rabbit anti-nuclear factor kappa B (NF-kB) p65 antibody (1:100; #L1207; Santa Cruz Biotech, Santa Cruz, California, USA) and Alexa Fluor 488-labeled anti-rabbit IgG (1:1000; Invitrogen) as primary and secondary antibodies, respectively. Actin was visualized using Alexa Fluor 594-labeled phalloidin (1:100; #A12381; Invitrogen). Nuclei were stained with 4′,6-diamidino-2-phenylindole (DAPI) (1:5000; #340-07971; Dojindo Laboratories, Kumamoto, Japan). Membrane ruffling was visualized by staining of polymerized actin with phalloidin. Images were acquired by fluorescent microscopy (BZ-9000; Keyence, Osaka, Japan). Percentage of microglial ruffling was analyzed from 150 cells over three independent experiments. Line scan analysis was performed using ImageJ software (NIH, Bethesda, MD, USA).
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7

Immunofluorescent Protein Localization

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Cells were fixed with 4% paraformaldehyde, permeabilized with 0.1% Triton-X 100 (Sigma-Aldrich, St. Louis, MO, USA), and incubated with anti-6 × His tag (1:500 dilution, MA1-21315; Invitrogen) and rabbit anti-calreticulin (1:400 dilution, 12238; Cell Signaling Technology) antibodies. The cells were then incubated with Alexa Fluor Plus 555-labeled goat anti-mouse IgG (1:200 dilution, A32727; Invitrogen) and Alexa Fluor® 488-labeled anti-rabbit IgG (1:200 dilution, A32731; Invitrogen). Nuclear counterstaining was performed using DAPI.
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8

Colocalization of IKKβ and USP16 in HEK293T cells

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HEK293T cells were transfected with IKKβ and USP16 WT for 36 hours in a 12-well plate. Cells were stimulated with or without TNF-α (10 ng/ml) and fixed with 4% paraformaldehyde for 30 min at room temperature. The sections were rinsed, preincubated with 5% blocking serum in 0.1% Triton X-100 for 1 hour, and then incubated overnight with primary antibodies at 4°C, followed by a 1-hour incubation at room temperature with secondary antibodies. The following primary antibodies were used: anti-IKKβ (H-4; 1:100) from Sigma-Aldrich, anti-USP16 (B-3; 1:100) from Santa Cruz Biotechnology, and FITC–anti-CD68 from BioLegend. The secondary antibodies were Alexa Fluor 488–labeled anti-rabbit IgG and Alexa Fluor 546–labeled anti-mouse IgG (1:1000; Invitrogen). Nuclei were costained with 4′,6-diamidino-2-phenylindole (DAPI) (Roche). Clinical biopsy tissues were stored at −80°C until they were processed to produce sections of 2 μm in thickness. Sections were processed as described above.
All the samples were imaged on an LSM 710 (Carl Zeiss) confocal microscope outfitted with a Plan-Apochromat 63× oil-immersion objective lens (Carl Zeiss). The data were collected using Carl Zeiss software ZEN (blue edition). Colocalization analyses were performed on 30 cells, and the results were expressed as Pearson’s coefficient (R).
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9

Immunofluorescence Staining of Stem Cell Markers

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The cells were rinsed briefly with phosphate-buffered saline (PBS) and fixed for 20 min in 4% paraformaldehyde in 0.1 M phosphate buffer (pH 7.4) at room temperature. The cells were permeabilized for 10 min with 0.1% Triton X-100 in PBS, and blocked for 45–60 min with 4% bovine serum albumin in PBS at room temperature. Cells were incubated overnight at 4 °C with one of the following antibodies: anti-Oct4 (1:500; Abcam, Cambridge, MA, USA), anti-Sox2 (1:500; NB110-37235, Novus Biologicals, Littleton, CO, USA), anti-Nanog (1:500; Abcam, Cambridge, MA, USA), anti-c-Myc (1:250; bs-4963R, Bioss, Woburn, MA, USA), anti-Klf4 (1:250, bs-1064R, Bioss, Woburn, MA, USA). This was followed by incubation with the following secondary antibody: Alexa Fluor 488-labeled anti-rabbit IgG (1:500; Invitrogen, Carlsbad, CA, USA). Nuclei were counterstained using DAPI (1 mg/mL PBS; Invitrogen, Carlsbad, CA, USA).
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10

Directed Differentiation of Embryoid Bodies

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Cells were chemically harvested by trypsinization and transferred to non-adherent bacteriological culture dishes in ES medium without Leukemia Inhibitory Factor (LIF) until formation of the aggregated cells of embryoid bodies was observed. Total RNA derived from plated embryoid bodies on day 6 was used for RT-PCR analysis for the three germ layer markers. The primers used for each germ layer are listed in Table 4. The cells were stained with anti-smooth muscle actin antibody (ab5694, Abcam, Cambridge, MA, USA), anti-Sox 17 antibody (cs-299, Santa Cruz, Dallas, TX, USA) and anti- βIII tubulin antibody (ab52901, Abcam, Cambridge, MA, USA). This was followed by incubation with the following secondary antibody: Alexa Fluor 488-labeled anti-rabbit IgG (A21206, Invitrogen, Carlsbad, CA, USA) or cy3® anti-rabbit IgG (A10520, Invitrogen, Carlsbad, CA, USA). Nuclei were counterstained using DAPI (1 mg/mL PBS; Invitrogen, Carlsbad, CA, USA).
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