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50 protocols using alectinib

1

Small molecule drug procurement protocol

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Crizotinib, ceritinib, alectinib, erlotinib, osimertinib, palbociclib, alvocidib, dinaciclib, THZ1, galunisertib and trametinib for in vitro experiments were all purchased from Selleck. Lorlatinib was purchased from MedChemExpress. Bemcentinib (R428) was purchased from Axon. Rapamycin was purchased from Caymen Chemical. Actinomycin D was purchased from Sigma. alvocidib, dinaciclib, Crizotinib, Lorlatinib and THZ1 for in vivo studies were purchased from MedChemEexpress whereas alectinib was purchased from Selleck.
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2

Preparation and Storage of Compounds

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AZA and DAC were purchased from Sigma-Aldrich (St. Louis, MO, USA). OR-2100 (OR21) was provided by OHARA Pharmaceutical Co. (Koka, Japan). Crizotinib and alectinib were purchased from Selleck Chemicals (Houston, TX, USA). All reagents were dissolved in DMSO and stored at −20 °C.
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3

RET Fusion Cancer Cell Line Maintenance

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The mesothelioma cell line EHMES-10 [17 (link)–19 (link)] containing a NCOA4-RET fusion, and human lung adenocarcinoma cell line LC-2/ad [20 (link)] and thyroid papillary carcinoma cell line TPC-1 [21 (link)] containing a CCDC6-RET fusion were used in this study. All cells were maintained in RPMI-1640 medium supplemented with 10% FBS, penicillin (100 U/mL), and streptomycin (10 μg/mL) in a humidified CO2 incubator at 37°C. All cells were passaged for less than 3 months before renewal from frozen early-passage stocks. Cells were regularly screened for mycoplasma using a MycoAlert Mycoplasma Detection Kit (Lonza, Rockland, ME, USA). Alectinib, vandetanib, and lenvatinib were obtained from Selleck Chemicals (Houston, TX, USA).
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4

Establishment of ALK Inhibitor-Resistant Cell Lines

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NCI-H3122 cells were provided by Pasi A. Jänne (DanaFarber Cancer Institute, Boston, MA). H3122 cells were maintained in RPMI 1640 medium with gentamicin (Gibco, Grand Island, NY) and supplemented with 10% fetal bovine serum (Gibco). The cell line was incubated at 37°C in a humidified atmosphere of 5% carbon dioxide. Crizotinib and alectinib were purchased from Selleck Chemicals (Houston, TX) and dissolved in dimethyl sulfoxide (Sigma-Aldrich, St. Louis, MO) for experiments. Ceritinib was obtained from Active Biochem (Maplewood, NJ). ALK inhibitor-resistant cell lines (CR1, LR1, and CH1) were established by exposing parental H3122 cells to Crizotinib, Ceritinib (LDK378), and alectinib (CH-5424802), respectively, at doses of 100 nM to 1 μM. Double-resistant cell lines (CR1LR1 and CR1CH1) were generated by exposing the Crizotinib-resistant cell line CR1 to Ceritinib and alectinib, respectively. The subclonal resistant cell lines exhibited ≥ 5-fold greater IC50 values for ALK inhibitors than parental cells, as determined using the cell viability assay, and this phenotype was stable for at least 6 months without ALK inhibitor treatment.
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5

Evaluation of Anti-Cancer Compounds

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Purchased human cancer cell lines included: (1) ES-2, HO-8910 PM and SW620 (Shanghai Institute of Biochemistry and Cell Biology); (2) HCC827, NCI-H1650, NCI-H1975, HepG2, and IMR-32 (American Type Culture Collection; Manassas, VA); and (3) OVCAR-3 (China Center for Type Culture Collection; Wuhan). All other human lines were obtained from Cobio Biosciences (Nanjing, China). Murine pro-B cell lines BaF3 and BaF3_EML4-ALKG1202R were purchased from KYinoo (Beijing). Other BaF3-engineered cell lines were constructed internally. An osimertinib-resistant parental cell (PC-9/OR) line was established by exposing PC-9 cells to escalating concentrations of osimertinib for 3 months.
APG-2449 was synthesized by Ascentage Pharma. Alectinib, ceritinib, crizotinib, defactinib, erlotinib, lorlatinib, osimertinib, and trametinib, as well as paclitaxel and carboplatin, were purchased from Selleckchem (Houston, TX). Ensartinib was purchased from Birdo Tech (Shanghai).
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6

Targeted Therapies in Cancer Research

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The following targeted therapies were used in this study: erlotinib, gefitinib, osimertinib, crizotinib, alectinib, lorlatinib, sotorasib, and adagrasib (Selleckchem). MAPK pathway inhibitors included afatinib, erlotinib, RMC-4550, sotorasib, trametinib, AMG 511, and AZD5363 (Selleckchem).
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7

Cell Culture Conditions for Lymphoma Lines

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RPMI 1640 and penicillin/streptomycin (P/S) supplemented with 10% fetal bovine serum (FBS) for SU-DHL-1 and MAC 2A, or with 20% FBS for SUP-M2. Phoenix cells grown in DMEM plus 10% FBS and P/S. FL5.12 cells cultured in RPMI 1640 with 10% FBS, P/S, ± 10% WeHi-3B supernatant and murine IL3 (400 ρM, eBioscience). All lines purchased from DSMZ apart from FL5.12's (gift from Wendel lab). Crizotinib and alectinib were purchased from Selleck Chemicals; ceritinib (LDK378) was kindly provided by Novartis.
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8

Cell Culture Protocols for ALK-rearranged Lung Cancer

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The H2228 cell line was obtained from the American Type Culture Collection (Rockville, MD), and the H3122 cell line was a gift from Adi F. Gazdar (UT Southwestern, Dallas, TX). Cells were cultured in 10% fetal bovine serum (FBS), 100-U/mL penicillin, and 100-mg/mL streptomycin (Invitrogen, Carlsbad, CA) at 37°C in an atmosphere with 5% CO2. Crizotinib, TAE684, ceritinib, alectinib, gefitinib, afatinib, PHA 665752, and AUY922 were purchased from Selleck Chemicals (Houston, TX). EGF and IGF-1 were purchased from Calbiochem and Sigma–Aldrich (St. Louis, MO), respectively. BI 836845 was kindly provided by Boehringer Ingelheim (Vienna, Austria).
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9

Alectinib and Rapamycin Combination Assay

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Karpas-299 cells were plated 24 hours before alectinib (Selleckchem) treatment at 0.05 × 106 cells/ml. alectinib dose-escalation studies (0.1, 0.3, 1, 3, 10, 30, 100, 300, and 1000 nM) were performed in triplicate and terminated when untreated control cultures reached three population doublings. Given that 10 nM alectinib was the maximum concentration at which Karpas-299 proliferation was not inhibited, cells were treated with 10 nM alectinib and an escalating dose of rapamycin (0.1, 1, 10, 100, and 100 ng/ml) in triplicate and terminated when 10 nM alectinib alone control cultures reached three population doublings. Cell counts and viability were determined using a Vi-CELL Cell Viability Analyzer using trypan blue exclusion.
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10

Cell Line Characterization and Antibody Validation

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H3122 and Ba/F3 cell lines were acquired through Dr. John Minna (The University of Texas Southwestern Medical Center, Dallas, TX) and Dr. Dan Theodorescu (University of Colorado Comprehensive Cancer Center, Aurora, CO), respectively. Cells were grown in RPMI-1640 with 10% FBS. The HEK293T cell line was purchased from ATCC. Alectinib was purchased from Selleck Chemicals. AKT pS437 (4058), AKT (2920), ERK pT202/Y204 (9101), ERK (9107), EGFR pY845 (6963) and HER2 pY877 (2241) were purchased from Cell Signaling Technology. EGFR (610017) and HER2 (610161) antibodies were purchased from BD Biosciences and anti-GAPDH was from Millipore.
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