The largest database of trusted experimental protocols

9 protocols using 0.45 m pvdf membrane

1

Apoptosis Protein Expression Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
The proteins were extracted from the cells using RIPA lysis buffer (Thermo Fisher Scientific, Inc.) and their concentration levels were quantified using a bicinchoninic acid protein assay kit (Beyotime Institute of Biotechnology). The proteins (40 µg per lane) were separated by SDS-PAGE on 10% gels, and were transferred onto 0.45 µm PVDF membranes (Thermo Fisher Scientific, Inc.). Following blocking with 5% non-fat milk at room temperature for 1 h, the membranes were incubated with primary antibodies overnight at 4°C. The following primary antibodies were used: Anti-Bax (Abcam; cat. no. ab32503; 1:1,000), anti-Bcl-2 (Abcam; cat. no. ab32124; 1:1,000), anti-cleaved caspase 3 (Abcam; cat. no. ab2302; 1:1,000), anti-cytochrome c (Cyto C; Abcam; cat. no. ab13575; 1:1,000), anti-apoptotic protease activating factor-1 (Apaf 1; Abcam; cat. no. ab2001; 1:1,000), anti-cleaved caspase 9 (Abcam; cat. no. ab2324; 1:1,000) and anti-β-actin (Abcam; cat. no. ab8227; 1:1,000). Subsequently, the membranes were incubated with horseradish peroxidase-conjugated secondary antibody (Abcam; cat. no. ab150077; 1:200) for 1 h at room temperature. Finally, an image of the protein band was detected using ECL reagent (Santa Cruz Biotechnology, Inc.). Image-Pro Plus software (version 7, Media Cybernetics, Inc.) was used for the targets that were normalized to β-actin.
+ Open protocol
+ Expand
2

Western Blot Analysis of Liver Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Protein lysates were prepared by homogenizing liver tissue in a modified RIPA buffer as previously described [77 (link)]. First, 40 ug of protein were loaded onto 12% SDS-Polyacrylimide Gels (Invitrogen, Waltham, MA, USA). Then, the protein was transferred to 0.45 µm PVDF membranes (Thermo). Primary antibodies for Western blot were diluted 1:1000 in 5% (w/v) bovine serum albumin in TBST buffer, and secondary antibodies were diluted 1:5000 in 5% (w/v) milk/TBST. Antibodies were supplied by various vendors (see Table 2 for details). Blots were developed using ECL reagent (Amhersham), and images were captured with a GE Amhersham Imager 6000 (Software Version 1.1.1).
+ Open protocol
+ Expand
3

Protein Separation and Western Blotting

Check if the same lab product or an alternative is used in the 5 most similar protocols
A NuPage® Electrophoresis System (Thermo Fisher Scientific), 4-12% Bis-Tris gradient gel (Thermo Fisher Scientific, NP0335BOX), and MOPS buffer (Thermo Fisher Scientific, NP0001). In all, 25–40 µg protein were used for protein separation on a 4–12% Bis-Tris gradient gel (Thermo Fisher Scientific, NP0335BOX) with MOPS buffer (Thermo Fisher Scientific, NP0001) of NuPage® Electrophoresis System (Thermo Fisher Scientific). Transfer of protein samples onto a 0.45 µm PVDF membrane (Thermo Fisher Scientific, LC2005) was carried out using a NuPage® XCell II Blot Module, and transfer buffer (Thermo Fisher Scientific, NP0006) with 10% methanol (Sigma, 322415). The iBind™ Western System (Thermo Fisher Scientific) was used for blocking, primary and secondary antibody incubations which details could be found above. A C-Digit scanner (LI-COR) was used for band detection with Image studio software (LI-COR, Version 3.1).
+ Open protocol
+ Expand
4

SARS-CoV-2 Spike Protein Detection

Check if the same lab product or an alternative is used in the 5 most similar protocols
A 1 mL volume of the supernatant containing rVSV-SC2 was pelleted by centrifugation at 30,000 × g for 2 h and lysed in 30 µL of NP-40 lysis buffer (Invitrogen) for 30 min on ice. Viral lysates were mixed with 4× Laemlli buffer (Bio-Rad) supplemented with 10% β-mercaptoethanol and denaturated at 95°C for 5 min. Proteins were separated by SDS-PAGE on a 4%–20% Mini-PROTEAN TGX Gel (Bio-Rad) and transferred onto a 0.45-µm PVDF membrane (Thermo Scientific). Membranes were blocked for 1 h at room temperature in TBS-T (20 mM tris, 150 mM NaCl, 0.1% Tween-20, pH 7.5) supplemented with 3% bovine serum albumin (BSA; Sigma). Membranes were then incubated for 1 h at RT with the following primary antibodies: mouse anti-SARS-CoV-2 S2 (dilution 1:2,000, clone 1A9, GeneTex) and mouse anti-VSV-M (dilution 1:1,000, clone 23H12, Kerafast). Membranes were washed three times with TBS-T and incubated 1 h at RT with an HRP-conjugated anti-mouse secondary antibody (dilution 1:50,000, G-21040, Invitrogen). After washing three times in TBS-T, the signal was revealed with SuperSignal West Pico PLUS (Thermo Scientific) following the manufacturer’s instructions. Images were acquired on an ImageQuant LAS 500 (GE Healthcare) and analyzed with Fiji software.
+ Open protocol
+ Expand
5

Protein Extraction and Western Blot Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Protein samples were prepared by lysing cell pellets in RIPA buffer (150 mM NaCl, 1% v/v Igepal C630 NP-40, 0.5% w/v sodium deoxycholate, 0.1% w/v SDS, 5 mM EDTA, 50 mM Tris HCl pH 8.0, and protease/phosphatase inhibitors), followed by sonication (2.5 W, 10 s), and heat-denatured in SDS-loading buffer (50 mM Tris HCl pH 6.8, 2% w/v SDS, 10% v/v glycerol, 1% 2-mercaptoethanol, 0.01% w/v bromophenol blue) for 5 min at 95 °C. Protein concentration was measured using a BCA Protein Assay Kit (Pierce, Thermo Fisher Scientific). 20 µg of total protein per sample was resolved by SDS-PAGE, electrophoretically transferred onto 0.45 µm PVDF membrane (Thermo Fisher Scientific) and blocked with 5% w/v skim milk powder in TBST buffer (10 mM Tris pH 8.0, 150 mM NaCl, 0.1% v/v Tween 20). Proteins of interest were labeled overnight at 4 °C with primary antibodies in milk/TBST. Membranes were washed three times in milk/TBST for 10 min, incubated with HRP-conjugated secondary antibodies (BioRad) for 1 h, and again washed three times in milk/TBST. SuperSignal West Pico Plus Chemiluminescence Substrate (Pierce) was used for detection and digital images were captured using an ImageQuant LAS 4000 (GE Healthcare Life Sciences).
+ Open protocol
+ Expand
6

Protein Extraction and Analysis Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were harvested and resuspended in RIPA buffer (Alfa Aesar, Haverhill, MA, USA) supplemented with protease and phosphatase inhibitors (Thermo Fisher Scientific, Waltham, MA, USA) and incubated in ice for 60 min. Lysed cells were centrifuged at 15,000 rcf for 20 min at 4 °C and the supernatant was isolated. Protein concentrations were determined using a bicinchoninic acid assay (Thermo Fisher Scientific, Waltham, MA, USA).
Proteins were separated by a 12% SDS/PAGE gel, transferred onto a 0.45 µm PVDF membrane (Thermo Fisher Scientific, Waltham, MA, USA), and probed with the appropriate antibodies. Chemiluminescence signal was obtained using ECLTM Prime (Cytiva, Marlborough, MA, USA), and blot images were captured using the ChemiDocTM Imaging System (Bio-Rad, Hercules, CA, USA).
+ Open protocol
+ Expand
7

Protein Extraction and Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were harvested and resuspended in RIPA buffer (Alfa Aesar) supplemented with protease and phosphatase inhibitors (ThermoScientific) and incubated in ice for 60 minutes. Lysed cells were centrifuged at 15,000 rcf for 20 minutes at 4°C and the supernatant was isolated. Protein concentrations were determined using a bicinchoninic acid assay (ThermoScientific).
Proteins were separated by a 12% SDS/PAGE gel, transferred onto a 0.45 µm PVDF membrane (ThermoScientific), and probed with the appropriate antibodies. Chemiluminescence signal was obtained using ECL TM Prime (Cytiva) and blot images were captured using the ChemiDoc TM Imaging System (Bio-Rad).
+ Open protocol
+ Expand
8

Quantitative Protein Analysis of Apoptosis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Epithelial cells were lysed using cOmplete Lysis-M, (Roche Diagnostics) and protein was harvested as described (14). Protein concentrations were measured using DC Protein assay (BioRad) with bovine serum albumin (BSA) (Thermo-Fisher) standards. Proteins were separated and immobilized using NOVEX electrophoresis and transfer apparatus, 4-20% Tris-glycine gels, and 0.45µm PVDF membrane (Thermo-Fisher). Western blot was performed as previously described (79) . Protein lysates of 16HBE cells exposed for 2h to 5µM staurosporine, (Thermo-Fisher) were used as a positive control for apoptosis. Antibodies for western blot were from Cell Signaling Technology (CS) and Abcam (AB). We used CASP9 CS9502, E-cadherin CS3195, A1AT AB207303, NE AB68672, RIP1 CS3493, MLKL CS14993, p-MLKL CS91689 and C4 anti-actin (Seven Hills Bioreagents LMAB-C4). Secondary antibodies were rbHRP (CS7074) and msHRP (CS7076). Blots were developed using ECL Prime detection reagent (Amersham). Images and analysis were performed using Amersham Imager 600.
+ Open protocol
+ Expand
9

Tyrosine Hydroxylase Protein Detection

Check if the same lab product or an alternative is used in the 5 most similar protocols
Western blots were performed as described earlier {Malard, 2009 #524}. After 7 days of differentiation, the cells were trypsinized, washed with PBS, then incubated with RIPA buffer (Santa Cruz) containing protease inhibitor cocktail tablet (Complete EDTA free TM Roche) and phosphatase inhibitor (Cocktail I and II, Sigma) . The cellular extracts were lysed using a Dounce homogenizer (20 strokes), incubated on ice for 60 min, and then centrifuged at 16,000 g for 60 min. The protein content of the supernatants was determined with the Coomassie Protein Assay (Thermo Scientifc). Proteins were separated on a 4-12% NuPAGE® Bis-Tris gel (Invitrogen) in a MOPS/SDS Running Buffer (Invitrogen) at 200 V. Proteins from the gel were electroblotted on a 0.45 µm PVDF membrane (Thermo scientific) using a semi-dry electroblot system (Biometra). After a saturation step in milk 5%, the membrane was incubated overnight at 4°C in a 5 % milk solution containing a polyclonal Antibody Rabbit anti-Tyrosine Hydroxylase (1/1000, cat# AB152, Millipore). Primary antibody was then detected using an anti Rabbit HRP (1/10000, Sigma; A6154). A mouse monoclonal anti-human actin from Sigma ref A3854 was used as a control at 1/25000. The signals were revealed using the Western Chemiluminescent HRP Substrate from Millipore.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!