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9 protocols using cellmasktm

1

Immunostaining and Quantification of Tumor Cells and Platelets

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For immunostaining tumor cells and/or platelets were fixed in 2% PFA in PBS (pH 7.4) for 10 min at −20 °C. After three washing steps in PBS cells were incubated with a BSA blocking solution (2% BSA, 0,2% Triton X-100, 0,1% Tween) for 1 hour. Primary antibodies were anti-PD-L1, rabbit (1:250, clone: 28-8), anti-CD41, mouse (1:400, clone: HIP8), anti-CD61, rabbit (1:250, clone: SJ-19-09), anti-GFP, rabbit (1:200, clone: EPR14104), anti-fibronectin, mouse (1:200, clone: P1H11); as secondary antibodies Alexa-Fluor 488/594 labeled anti-rabbit (1:1000, Invitrogen) and Fluor 488/594 labeled anti-mouse (1:1000, Invitrogen) were used. Afterwards slides were mounted in fluorescent mounting medium containing DAPI (1:1000, BioLegend) counter-stain. For the plasma membrane staining CellMaskTM (ThermoFisher) and Dil (ThermoFisher) were used according to manufactures' instructions. For nuclear staining NucBlueTM (ThermoFisher) was used. Image acquisition was performed using an Olympus BX63 microscope and a DP80 camera (Olympus) and CellSens Dimension 1.17 software. Quantification of platelets, fibronectin, and tumor cells were performed via counting fluorescence positive signals using an ImageJ script (v.1.51n and v.1.52).
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2

Visualizing eGFP and Gag-eGFP Transfected Cells

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eGFP and Gag-eGFP transfected cells were visualized using a TCS SP5 confocal microscope (Leica, Wetzlar, Germany). To do this, cells were stained with 0.1% v/v of CellMaskTM and 0.1% v/v of Hoechst (Thermo Fisher Scientific) to visualize the lipid membrane and cell nucleus, respectively. A washing step was performed to remove excess dye by centrifugation at 300× g for 5 min, and the cells were resuspended in fresh Dulbecco’s phosphate-buffered saline (DPBS, Thermo Fisher Scientific). Samples were placed in 35 mm glass-bottom Petri dishes with a 14 mm microwell (MatTek Corporation, Ashland, MA, USA) for visualization.
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3

Intracellular Uptake of Nanoparticles

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To evaluate the intracellular uptake of the synthesized nanoparticles, confocal laser scanning microscope (CLSM) and flow cytometry analysis were performed. Briefly, for CLSM, MDA-MB-231 cells stably expressing plasma membrane-targeted EGFP were grown in coverslips kept on microwell dishes at a seeding density of 1 × 105 cells per coverslip overnight. Afterwards, the medium was replaced with a suspension of R-PPN and R-TPPN and cells were then incubated at 37°C for 4hrs. Nuclei were counterstained with Hoechst. Prior to imaging, cells were washed with PBS to remove un-internalised nanoparticles. The images were acquired using a confocal laser scanning microscope (CLSM) (TCS SP2; Leica Microsystems, Germany). Cell internalisation was also checked in MCF7 cells, where nuclei were counterstained with Hoechst and cell membrane using CellMask TM (Thermo Scientific) green plasma membrane stain. For flow cytometry analysis, 1 × 105 cells (both MCF7 and MDA-MB-231 cells) grown on a 24 well plate were incubated with R-PPN and R-TPPN for 4 hours. The cells were trypsinized, washed with PBS and subjected to flow cytometry (BD FACSAria III, USA) analysis.
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4

Endothelial Cell Culture and DNA Nanostructures

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1. Materials: Human Umbilical Vein Endothelial Cells (HUVECs), Endothelial Cell Growth Basal Medium-2 (EBM) and EGM-2 SingleQuots TM Supplements were obtained from Lonza. Fetal bovine serum (FBS), PenStrap, Trypsin-EDTA (0.25%), collagen was acquired from Gibco. Phosphate buffer saline (PBS) was purchased from HyClone. The sequences used for DNA nanostructure synthesis (Table 1-4), 6X loading dye, 50 bp DNA ladder, mowiol, transferrin-A488, Hoechst and triton-X 100 were ordered from Sigma Aldrich. Nuclease free water, ammonium persulfate, ethidium bromide, TEMED, paraformaldehyde (37%) and adherent cell culture dishes were procured from Himedia. Tris-Acetate EDTA (TAE), Acrylamide/bisacrylamide sol 30% were purchased from GeNei. Magnesium chloride was ordered from SRL, India. Geltrex TM and CellMask TM were obtained from ThermoFischer. Matrigel and collagen were purchased from Corning.
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5

Nanomaterial Uptake in HeLa Cells

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HeLa cells were seeded at 8 × 105 per dish in Nunc™ Glass culture dishes (Thermo Fisher Scientific, Sant Cugat del Vallés, Spain). After 24 h, different NPs (AuCeO2 or TPP–AuCeO2) at 20 µg/mL were added and incubated for 24 h (37 °C, 5% CO2 atmosphere (Linde, Barcelona, Spain)). Nuclei (Hoechst 33342 dye, 1:20,000, blue) (Life Technologies, Madrid, Spain), cell membrane (CellMaskTM, 1:10,000, green) (Life Technologies, Madrid, Spain), and mitochondria (MitoTracker™, 1:2,000, red) (Thermo Fisher Scientific, Sant Cugat del Vallés, Spain) were stained following the manufacturer’s protocol [39 (link),40 (link)]. Fluorescence images were obtained in vivo using a FV1000-spectral confocal microscope (Olympus, Hamburg, Germany). Samples were maintained at 37 °C under 5% CO2 atmosphere during imaging and were illuminated simultaneously with laser light at 405 nm (exciting Hoechst, blue), 488 nm (exciting CellMask, green), and 561 nm (exciting MitoTracker, red), recording the emission from 425 to 603 nm in separate channels. The reflection signal of NPs was split by using a dichroic mirror (20/40) after irradiating at 633 nm. A Z-Stack study across the depth of the cells was performed with an interslice distance of 400 nm [41 (link),42 (link)]. The Fiji image analysis software was used to analyze the images [43 (link)].
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6

Imaging Cellular Uptake of Nanoparticles

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Experiments were performed as described in previous works. 33, 34 Briefly, HeLa cells were seeded at 8x10 5 per dish in Nunc™ Glass culture dishes. After 24 h, NPs (AuChi and AuCeO2) were added at 20 µg/mL and incubated for 24h. Nuclei (Hoechst 33342 dye, 1:20000 dilution, blue) (Life Technologies, Madrid, Spain) and cell membranes (CellMaskTM, 1:10000 dilution, green) (Life Technologies, Madrid, Spain) were stained following manufacturer's protocol. 1, 2 Fluorescence images were obtained in vivo with an Olympus (FV1000-spectral) confocal microscope. Samples were maintained at 37°C under 5% CO2 atmosphere during imaging and were illuminated simultaneously with laser light at 405 nm (exciting Hoechst, blue), and 488 nm (exciting CellMask, green) recording the emission from 415 to 603 nm in separate channels. The reflection signal of NPs was split by using a dichroic mirror (20/40) after irradiating at 633 nm.
Z-stack study across the depth of the cells was recorded with an interslice distance of 400nm.
Fiji ImageJ program was used to analyse the images.
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7

Hepatocellular Carcinoma Cell Line Culture

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Human PLC/PRF/5 (Alexander cells) hepatocellular carcinoma cell line was procured from the cell repository of the National Centre for Cell Science (NCCS), Pune, India. Dulbecco’s Modified Eagle Medium (DMEM) was purchased from Hi-media and fetal bovine serum (FBS) was purchased from Gibco. Penicillin–streptomycin, trypsin, Live/Dead-Viability/Cytotoxicity Assay Kit, Annexin-PI staining kit, Cell MaskTM (plasma membrane staining kit) and Hoechst were purchased from Invitrogen – Thermofisher Scientific.
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8

Visualizing Membrane Protein Localization

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We used coverslips coated with poly-L-lysine to seat the HEK293T cell, and images were taken 48h after transfection and before previous incubation with the plasma membrane marker CellMask TM (Invitrogen C10046). A Leica TCS SP5 II inverted microscope (Leica Microsystems, Wetzlar, Germany) equipped with a 63×/1.40 NA oil immersion objective was used to acquire the images. All images were obtained from living cells in phosphate-buffered saline at room temperature (22-24°C), digitalized with a resolution of 1024×1024 pixels, 200 Hz velocity, and 6-line average in sequential scanning mode. To minimize crosstalk between channels, eGPF was excited with a 488-nm Argon laser simultaneously with CellMaskTM at 633 nm during the scanning process. For live imaging, mCherry was excited sequentially using a 594-nm He-Ne laser between scan lines. The emitted signals were then collected from the three distinct channels, with the following bandpass lter settings: 492 to 550 nm for eGFP detection, 598 to 630 nm for mCherry, and 640 to 700 nm for CellMaskTM. We used the ImageJ 1.44p software (Image J v.1.53c, Wayne Rasband, National Institutes of Health, USA) (Schneider et al., 2012) (link) to process the images. Colocalization analyses were performed by calculating Manader's colocalization coe cient using the JACoP plugin (Bolte & Cordelieres, 2006) (link).
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9

Cellular Uptake of Isomeric Compounds

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The cellular uptake experiment was performed using confocal fluorescence microscopy on living cells. Cells were seeded (10 6 cells•cm -2 ) on culture dishes with a glass bottom (Fluorodish from World Precision Instruments, Stevenage, UK). After seeding, cells were incubated with 50 µg.mL -1 of (E) or (Z) isomers for 24 h. Cells were also loaded 15 min with CellMask TM (Invitrogen, Cergy Pontoise, France) at 5 µg•mL -1 , for membrane staining. Then, cells were washed twice with culture medium and fluorescence imaging was performed on living cells with a LSM780 LIVE confocal microscope (Carl Zeiss, Le Pecq, France), at 750 nm for isomers detection and 561 nm for cell membranes. All images were obtained with a high magnification (Plan-Apochromat 40x/1.3 Oil DIC).
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