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25 protocols using cetuximab

1

KRAS/BRAF WT Tumor PDX Models

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PDX experiments were performed as previously described59 (link). Basically, four KRAS/BRAF WT PDX lines were selected. Patient-derived tumor tissues were cut into small fragments (3 mm3) and subcutaneously implanted into immunocompromised mice (GemPharmatech Co., Ltd.). For single drug treatment, when tumor volume reached ~50 mm3, mice were randomly allocated to two groups and were i.p. injected with either cetuximab (40 mg/kg, Selleck) or vehicle once a week. For combination treatment, when tumor volume reached ~50 mm3, mice were randomly allocated to the following treatment groups: (1) vehicle control; (2) cetuximab (40 mg/kg, Selleck); (3) LGK974 (3 mg/kg, Apexbio), (4) cetuximab and LGK974 using doses described above. Administration of cetuximab was the same as addressed above. LGK974 was administered to mice via i.p. injection every day. Mouse weights and tumor volumes were measured every three days during the experiments.
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2

Colorectal Organoid Regulation by RAC1B

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Human colorectal organoids derived from liver metastases (C001 and C002) were cultured in ADF medium containing 100 U/ml penicillin, 100 µg/ml streptomycin, 2 mM L-Glutamine, 10 mM HEPES, 1X Primocin, 1X B27, 1.25 mM NAC, 10 mM Nicotinamide, 50 ng/ml EGF, 500 nM A83-01, 10 µM SB202190, 100 ng/ml Noggin, 1 µM PGE and 10 nM gastrin. Organoids were passaged by breaking into small fragments and replating. RAC1B was depleted by treatment with 1 µM hRAC1B PMO or NT PMO for 96 h. After 96 h, the media was replaced with fresh media containing 1 µM hRAC1B PMO or NT PMO plus or minus 30 μg/ml cetuximab (Selleck, A2000). Pictures were taken 96 h post treatment. For all four experimental setups, images were used to assess the organoid area using ImageJ.
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3

HNSCC Cell Culture and Drug Treatment

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HNSCC FaDu cell line was obtained from the American Type Culture Collection (ATCC; Manassas, VA, USA). Authenticity of the cells was confirmed by short tandem repeat profile. The cells were maintained in a humidified atmosphere of 5% CO2 at 37 °C in RPMI-1640 medium (Sigma-Aldrich Corp., St. Louis, MO, USA) supplemented with 10% fetal bovine serum (FBS) and 1% penicillin–streptomycin. Cetuximab, ipatasertib, afatinib, and dacomitinib were obtained from Selleck Chemicals (Houston, TX, USA).
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4

Imaging Kinetics of EGFR Antibody Binding

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Imaging kinetics were measured using A431 cells cultured in a Millicell EZ 8‐Well Glass Slide (Millipore). The A431 cells were stained with 10 µg mL−1 of SAFE‐IVM AF647‐labeled anti‐EGFR antibody (Cetuximab, Selleck Chemicals, A2000) for 10 min at RT. The stained cells were first imaged before addition of HK‐Tz. After the initial round of imaging, 40 µm of HK‐Tz was added to the cells for different lengths of time (5 s–30 min) to measure kinetics. After incubation, cells were washed three times with PBS and imaged.
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5

Deglycosylation of Cetuximab for Analysis

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The deglycosylation reaction contained 3.5 μM cetuximab (Selleckchem, A2000), 1X GlycoBuffer (New England Biolabs, B0701S), and was initiated with 100 units of PNGase F (New England Biolabs, P0708S) at 37°C and for 9.5 hours. To remove excess unreacted reagents, each reaction mixture was desalted using 50 kDa molecular weight cut-off (MWCO) centrifugal filters (Amicon unit, UFC505024) into 100 mM potassium phosphate (pH 7.6) prior to the transamidation reaction.
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6

Photoconjugation of PpL Mutants and Antibodies

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In initial screens, PpL mutants and anti-CD3 (clone UTH1, BD bioscience 555329) antibodies were diluted into PBS pH7.6 such that the final concentrations were approximately 50 µM and 2 µM, respectively, and loaded into thin walled 200 µL polypropylene microtubes (PCR tubes). This mixture was then irradiated for 1 h under 365 nm light at an intensity of 6.4 mW/cm2 from an LED source (M365LP1, Thor Labs) 14 cm away. Products were reduced using DTT solution (ThermoFisher) and separated on 4–12% BisTris PAGE gels (ThermoFisher) to observe photoconjugation. Full gel images are shown in Supplementary Fig. S2. Photocleavage was accomplished using the same irradiation setup. Photoconjugations to anti-FLAG antibody (anti-DYDDDDK clone 1557CT661.18.1, Lifespan Biosience LS‑C392574) or Cetuximab (Selleck Chemicals A2000) were done identically, with 100 µM PpL constructs that had been freshly purified. Photoconjugates were then purified from excess PpL using Amicon Ultra 50 kDa MWCO spin filter columns (Millipore-Sigma, UCFC505008). The unaltered antibody control conditions of our ELISA experiments, described below, validated Anti-FLAG binding to the FLAG peptide and Cetuximab binding to EGFR protein.
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7

Epidermal Growth Factor Stimulation Assay

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Chemicals (Cobimetinib, Afatinib, Erlotinib, Gedatosilib) were purchased from SelleckChem and antibodies (Cetuximab and Trastuzumab) were obtained from the Pharmacy Department of the Paul Strauss Cancer Center (CLCC, Nelly Etienne-Selloum). BHY and KYSE-510 cells at 70% confluency were grown with 10, 100, and 1000 ng/mL human epidermal growth factor (E9644-.2MG Sigma, Saint-Quentin-Fallavier, France) for 24 h.
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8

Ferroptosis Induction and Inhibition Assay

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Erastin (Selleck, Houston, TX, USA), RSL3 (Selleck, Houston, TX, USA), Sorafenib (Selleck, Houston, TX, USA), liproxstatin-1 (MCE, Princeton, NJ, USA), Cetuximab (Selleck, Houston, TX, USA), Gefitinib (Selleck, Houston, TX, USA), and staurosporine (GlpBio, Montclair, CA, USA) were dissolved in DMSO and kept at 80 °C.
HNSCC cells (CAL33, CNE-2, S18, S26, AMC-HN-8, U686) and N2A cells or primary neural stem cells (NSCs) were seeded into a 96-well plate with 8000 cells/wells, and DMSO, Erastin, RSL3, or Sorafenib were added into the medium the next day. Ferroptosis-inhibitors (liproxstatin-1) were added 2 h before Erastin and RSL3 or staurosporine. After culturing for 6 or 22 h, 10 μL of CCK-8 reagent (GlpBio, Montclair, CA, USA) was added and incubated at 37 °C and 5% CO2 for 2 h. The absorbance was measured at 450 nm with a microplate analyzer.
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9

Synthesis of Immunotoxin IT-Cetuximab

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In this study, we used an immunotoxin in which saporin was conjugated to cetuximab (Selleck.co.jp), hereafter referred to as IT‐cetuximab. IT‐cetuximab was prepared as follows: biotinylated cetuximab was purified by mixing cetuximab with EZ‐LINK sulfo‐NHS‐LC‐biotinylation kit (Thermo Fisher Scientific) at a 1:40 molar ratio using PD SpinTrap G‐25 (GE Healthcare Life Sciences). Next, biotinylated cetuximab and streptavidin‐saporin (Biotin‐Z Internalization Kit [KIT‐27‐Z]) (Advanced Targeting Systems) were mixed in equivalent amounts and allowed to react at room temperature for 30 min to obtain IT‐cetuximab.
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10

EGFR Signaling Pathway Analysis

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Antibodies against pEGFRY1068 (#2236), pERK1/2T202/Y204 (#4370), ERK1/2 (#4696), pS6S235/S236 (#2211), S6 (#2217), α-tubulin (#3873), and GAPDH (#2118) were purchased from Cell Signaling Technology (Beverly, MA). Antibody against EGFR (#sc-03) was purchased from Santa Cruz Biotechnology (Dallas, TX). Erlotinib was purchased from Selleck Chemical (Houston, TX), and cetuximab was obtained from the pharmacy of UCSD Moores Cancer Center (La Jolla, CA).
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