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3 protocols using cy3 conjugated mouse anti α sma

1

Necrosis Assay and Immune Cell Profiling

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For necrosis assay, LLC tumor sections were HE-stained and histopathologically examined to identify necrotic areas in tumor tissues. CD11b+ cells accumulation was immunohistochemically assessed in formalin-fixed, paraffin-embedded 4 μm thick tumor serial sections by using a rabbit anti-mouse CD11b antibody (Bioss, Beijing). Frozen tissue sections were co-immunostained with rat anti-mouse CD11b-FITC (ab24874, Abcam) and rabbit anti-CD31 (SAB1302548, sigma), CXCR4 (ab2074, Abcam), Cy3-conjugated mouse anti-α-SMA (1:400; Sigma) antibodies, anti-iNOS (ab15323, Abcam) or anti-MMP-9 (Bioss, Beijing). Then staining with anti-CD 31 antibody, anti-CXCR4 antibody, anti-iNOS antibody and anti-MMP-9 antibody was followed by staining with a DyLight 488-conjugated goat anti-rabbit secondary antibody (1:200; Jackson ImmunoResearch).
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2

Immunofluorescent Staining of Cultured Intestinal Organoids

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Cultured HIOs were fixed with 4% paraformaldehyde (Electron Microscopy Sciences, Hatfield, PA) in PBS, washed in PBS, and embedded in Tissue-Tek O.C.T. (Sakura Finetek, Torrance, CA), then sliced on a cryotome and mounted on Fisherbrand Superfrost Plus slides. The tissue was, then blocked and permeabilized in PBS containing 5% goat serum (Invitrogen, Carlsbad, CA) and 0.5% Triton-X 100 (LabChem, Pittsburgh, PA) for 1 hour at 37 degrees C. An additional blocking step was performed using SFX signal enhancer (Invitrogen, Carlsbad, CA) for 30 minutes at room temperature, followed by incubation with primary antibodies to vimentin (Sigma, St. Louis, MO, catalog # SAB4503083) or to desmin (Abcam, Cambridge, MA, catalog # ab8976) at 1:100 for 2 hours. Slides were washed with 0.05% Tween 20 (Bio-Rad, Hercules, CA) in PBS, followed by incubation with AlexaFluor 488-conjugated anti-mouse or anti-rabbit antibody (Invitrogen, Carlsbad, CA). Detection of αSMA was performed with 30 minute incubation using Cy3 conjugated mouse anti-αSMA (Sigma, St. Louis, MO) at 1:200, co-stained with 4, 6’ diamidino-2-phenylindole (DAPI), (Molecular Probes, Eugene, OR) at 1:1000, to visualize nuclei. Images were acquired using Olympus BX60 microscope and DP72 camera, with CellSens Standard imaging software, version 1.11 (Olympus America, Center Valley, PA). Images were merged using ImageJ software.
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3

Immunofluorescence Analysis of Tumor Microenvironment

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Tumors were excised immediately after sacrifice and flash-frozen in OCT medium (Sakura Finetech SAS, Villeneuve d’Ascq, France). Immunohistochemistry was performed using previously reported procedures [7 (link)]. The following primary antibodies were used: Rat anti-mouse CD31 (BD Biosciences, Le Pont de Claix, France), Cy3-conjugated mouse anti-αSMA (Sigma-Aldrich, Saint-Quentin Fallavier, France), rabbit anti-mouse desmin (Life Technologies), FITC-conjugated anti-pimonidazole (Hypoxyprobe). The secondary antibodies were: Alexa647-conjugated goat anti-rabbit and Alexa488-conjugated goat anti-rat (Life Technologies). Slides were mounted in Prolong Gold with DAPI (Life Technologies) except for the perfusion assay. Images were acquired using a Nanozoomer HT slide scanner (Hamamatsu Photonics, Massy, France) at 20× or 40× resolution.
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