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17 protocols using anti p β catenin

1

Rac1 Activation and Signaling Pathway Analysis

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Active Rac1 pull-down assay and Western blot analysis were performed as previously described [4 (link)]. MCF7 Cells incubated with polypeptides at 1.0 μM were lysed in a NP-40 lysis buffer (0.15 M NaCl, 1% NP-40, and 0.05 M Tris-HCl, pH 8.0) with a mixture of protease inhibitors (0.25 mM phenylmethylsulfonyl fluoride, 10 mg/mL aprotinin and leupeptin, and 1 mM dithiothreitol). Approximately 20 μg of total protein was separated via 10% SDS-PAGE and transferred to a PVDF membrane (Millipore, MA, USA). The primary antibodies purchased from Cell Signaling Technology were as follows: anti-p-Akt (Thr308, #13038), anti-p-Akt (Ser473, #4060), anti-Akt (#4691), anti-p-ERK (Thr202/Tyr204, #4094), anti-ERK(#4695), anti-p-STAT5 (Tyr694, #4322), anti-p-STAT3 (Tyr705, #4113), anti-STAT5(#94205), anti-p-GSK-3β (Ser9, #9323), anti-GSK-3β (#12456), anti-p-β-catenin (Ser33/37/Thr41, #9561), anti-p-β-catenin (Thr41/Ser45, #9561), anti-p-β-catenin (Ser552, #5651), anti-p-β-catenin (Ser675, #4176), anti-β-catenin (#8480), and anti-GAPDH (#5174). The primary antibodies purchased from Santa Cruz Biotechnology were anti-STAT3 (SC-8019) and anti-c-Myc (SC-40).
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2

Western Blot Analysis of Signaling Proteins

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Protein was extracted from indicated cells with ice-cold radioimmunoprecipitation lysis solution for 30 min followed by refrigerated centrifugation for 15 min to remove cell debris. The Bicinchoninic Acid Kit (Sigma, St. Louis, MO, USA) was used for concentration measurement. The samples were separated with sodium dodecyl sulfate-polyacrylamide gel electrophoresis and polyvinylidene fluoride (PVDF) membrane was used for transfer. The background signal was briefly masked with 5% nonfat milk. Primary antibody (anti-HMGA2, #5269, 1:1000, anti-Wnt3a, #2391, 1:1000, anti-p-β-Catenin, #9562, 1:1000; anti-p-β-Catenin, #9561, 1:1000, anti-c-Myc, #9402, 1:1000, anti-β-Actin, #4967, 1:1000, anti-GAPDH, #2118, 1:1000 were obtained from Cell Signaling Technology, Danvers, MA, USA) incubation was performed at 4°C for 12 h. The PVDF membrane was rigorously washed and subjected to hybridization with HRP-conjugated secondary antibody (anti-rabbit, #7074, 1:5000 obtained from Cell Signaling Technology) for 1 h at room temperature. Blots were visualized using an enhanced chemiluminescence method (ECL, Millipore, Billerica, MA, USA). GAPDH and β-actin were employed as loading controls.
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3

Isolation and Characterization of Dip G

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Dip G (>98% purity) was isolated as previously described22 (link). Chloroquine, oil red O, sodium butyrate (NaB), methyl thiazolyl tetrazolium (MTT) and tamoxifen (TAM) were purchased from Sigma-Aldrich (St. Louis, MO). Z-VAD-FMK and necrostatin-2 were from Selleck (Houston, TX). Anti-E-cadherin (14472), anti-vimentin (5741), anti-N-cadherin(13116), anti-p-β-catenin (Ser33/37/Thr41) (9561), anti-p-β-catenin (Thr41/Ser45) (9565), anti-p-β-catenin (Ser552) (5651), anti-p-β-catenin (Ser675) (4176), anti-β-catenin (8480), anti-c-Myc (18583), anti-LC3B (3868) and anti-GABARAPL1 (26632) were purchased from Cell Signaling Technology (Beverly, MA). Polyclonal anti-GABARAPL1 (11010-1-AP) was from Proteintech Group (Chicago, IL). Anti-ERα (sc-8002), anti-ERβ (sc-373853 X) and anti-β-Actin (sc-47778) were from Santa Cruz Biotechnology (Santa Cruz, CA). Anti-SQSTM1/p62 (ab101266) was from Abcam (Cambridge, UK). CD24 monoclonal antibody (FITC) (11-0247-42), CD44 monoclonal antibody (PE-eFluor 610) (61-0441-80), Lipofectamine 3000 and Lipofectamine RNAi MAX were purchased from Thermo Fisher Scientific (Waltham, MA).
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4

Histone Methylation and Transcription Factors

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Cells were treated with DNMTi (guadecitabine; 20–1000 nM) for 72 hours, and proteins were extracted from treated cells with RIPA buffer (Thermo Fisher, cat #89900). Protein concentrations were quantified with the Bradford assay (Bio-Rad, cat #5000001) following the manufacturer’s protocol. Lysates were subjected to SDS-PAGE and transferred to a PVDF membrane by standard methods [20 (link)]. Western blots were probed with primary antibodies anti-Snail (Cell Signing Technologies, cat #3879), anti-p-NF-κB (Cell Signaling Technologies, cat #3033), anti-p-β-catenin Cell Signaling Technologies, cat #4176), anti-histone H3 (Cell Signaling Technologies, cat #4499), anti-GAPDH (Cell Signaling Technologies, cat #5174), and anti-acetyl-histone H3(Cell Signaling Technologies, cat #8173). After incubation with corresponding secondary antibodies conjugated with horseradish peroxidase, ECL kit (Thermo Scientific, cat #32106) was utilized to visualize the protein bands.
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5

Ovary Protein Extraction and Analysis

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Ovaries were collected and homogenized in lysis buffer and protease inhibitor cocktai containing 1 mM dithiothreitol (DTT), 1 mM phenylmethylsulfonyl fluoride (PMSF), 1 mg/ml leupeptin, 2 mg/ml aprotinin, and 5 mM ethyl glycol tetraacetic acid (EGTA, Beyotime Biotechnology, China). Then the tissues were centrifuged at 12,000× g for 10 min to obtain supernatants which were diluted to 1 µg/µl with 4 × sample buffer and frozen at − 20 °C. Proteins were quantified with the Lowry Assay. The tissue extracts were resolved on 10% sodium dodecyl sulfate–polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to polyvinylidene fluoride (PVDF) membranes. The membrane was blocked and incubated with primary antibodies of anti-β-actin (1:1000, Cell Signaling, USA), anti-β-catenin (1:1000, Cell Signaling, USA), anti-p-β-catenin (1:1000, Cell Signaling, USA) and anti-GSK-3β (1:1000, Cell Signaling, USA) at 4 °C overnight, then reacted with a secondary antibodies of anti-rabbit IgG (1:1000, Cell Signaling, USA) after removing unconjugated antibodies by tris-buffered saline Tween-20 (TBST). The peroxidase activity was visualized using an enhanced chemiluminescence (ECL) kit (Biosharp, USA) to image the proteins recognized by the antibodies.
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6

Immunoblot Analysis of Hedgehog and AKT Signaling

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Immunoblot analysis was carried out with the following primary antibodies: anti-Gli1 (Cell Signaling), anti-Gli2 (R&D systems), anti-Gli3 (9 (link)), anti-HA (Santa Cruz), anti-Myc (Santa Cruz), anti-Flag (Sigma), anti-Tubulin (Sigma), anti-Gapdh (Millipore), anti-ERK (Santa Cruz), anti-pAKT (Cell signaling), anti-pGSK3 (cell signaling), anti-p-β-Catenin (cell signaling). CA-AKT plasmid (myrAkt, Addgene), Bafilomycin A1 (Sigma) and MG132 (Calbiochem) were purchased. For immunoprecipitation, cells were lysed in a buffer containing 50 mM Tris-HCl (pH 7.5), 150 mM NaCl, 1 mM EDTA and 1% NP-40, supplemented with complete mini protease inhibitor cocktail (Roche). After centrifugation the supernatants were incubated with the indicated antibodies overnight at 4°C, and the immunoprecipitates extensively washed with lysis buffer, eluted with SDS sample buffer and boiled for 5 minutes prior to analyses by immunoblotting.
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7

Investigating Wnt/β-Catenin Pathway Modulation

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Anti-FERMT3 (ab68040), anti-E-cadherin (ab40772), anti-Vimentin (ab92547) and anti-Snail (ab216347) were purchased from Abcam (Abcam, USA). Anti-GAPDH (AB0037) was purchased from Abways Biotechnology (Shanghai, China). Anti-β-catenin (#8480), anti-p-β-catenin (#5651), anti-GSK-3β (#12456), anti-GSK-3β (#5558) was purchased from Cell Signaling Technology. Lithium Chloride (LiCl), an activator of the Wnt/β-catenin signaling pathway, was purchased from Sigma Aldrich.
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8

Protein Expression Analysis for Cell Signaling

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Tissues and cells were homogenized. Solubilized proteins in lysis buffer (0.1 M Tris–HCl (pH 6.8), 4% SDS, 20% glycerol, 12% 2‐mercaptoethanol, and BPB) were subjected to SDS–PAGE, and proteins were electrotransfered to nitrocellulose membranes. Immunodetection was carried out using an ECL kit (GE Healthcare) according to the manufacturer's protocol. Antibodies used were as follows: anti‐β‐catenin (1:5,000, BD, #610154), anti‐P‐β‐catenin (1:2,000, Cell Signaling Technology, #4176), anti‐active‐β‐catenin (1:2,000, Cell Signaling Technology, #19807), anti‐PTEN (1:2,000, Cell Signaling Technology, #9559), anti‐P‐PTEN (1:2,000, Cell Signaling Technology, #9554), anti‐AKT (1:1,000, Cell Signaling Technology, #9272), anti‐P‐AKT (1:1,000, Cell Signaling Technology, #9271), anti‐IGF‐1Rβ (1:1,000, Cell Signaling Technology, #3018), anti‐P‐IGF‐1Rβ (1:1,000, Cell Signaling Technology, #4568), and anti‐HSC70 (1:2,000, Santa Cruz Biotechnology, #sc7298).
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9

Comprehensive Western Blot Analysis

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Western blot was performed as previous study described [9 (link)] using anti-GSK3β, anti-cyclinD1 (BD Pharmingen, Franklin Lakes, NJ, USA), anti-p-β-catenin, anti-β-catenin (Cell Signaling Technology,Danvers, MA,USA), anti-c-Myc and anti-MMP7 (Bioworld Technology, St. Louis Park, MN, USA). An anti-α-tubulin monoclonal antibody (Sigma, St. Louis, MO, USA) was used as a loading control [9 (link)].
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10

Protein Extraction and Western Blot Analysis

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Total protein was extracted using radioimmunoprecipitation assay lysis buffer (Beyotime, China). An NE-PER™ Nuclear Cytoplasmic Extraction Reagent kit (Thermo Fisher Scientific, MA) was used according to the manufacturer’s instructions for extracting nuclear and cytoplasmic proteins from the different groups.
A 12% sodium dodecyl sulfate‐polyacrylamide gel was chosen for total protein separation, and the proteins were then transferred to nitrocellulose membranes (Millipore, USA). The membranes were incubated with primary antibodies, including anti-LC3B (Abcam Cat# ab192890, RRID: AB_2827794), anti-P62/SQSTM1 (Abcam Cat# ab207305, RRID: AB_2885112), anti-β-actin (Proteintech# 20536-1-AP), anti-LDHA (Cell Signaling Technology Cat# 3582, RRID: AB_2066887), anti-β-catenin (Cell Signaling Technology Cat# 8480), anti-p-β-catenin (Cell Signaling Technology Cat# 4176), anti-c-Myc (Covance Cat# MMS-150P-1000, RRID: AB_291322), anti-GSK3-β (Cell Signaling Technology Cat# 121456), anti-Axin1 (Cell Signaling Technology Cat# 2087, RRID: AB_2274550) and anti-Histone H3 (Cell Signaling Technology Cat# 4499, RRID: AB_10544537). Enhanced chemiluminescence reagents (Millipore, USA) were used to assess protein expression.
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