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12 protocols using phosphorylated smad2 3

1

Western Blot Analysis of Smad2/3

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Aliquots of HLF incubated with TGF-β or MC-EXO were homogenized and the protein amounts determined by the Bio-Rad DC protein assay (Bio-Rad, Hercules, CA, United States). Primary antibodies used were rabbit polyclonal Smad2/3 (Cell Signaling, Danvers, MA, United States 8685, 1:1000 dilution) rabbit polyclonal phosphorylated Smad2/3 (Cell Signaling, Danvers, MA, United States 8828, 1:1000 dilution), and rabbit polyclonal GAPDH (Abcam, Waltham, MA, United States ab9485, 1:1000 dilution). GAPDH was used as a loading control. Western blot quantification was performed with ImageJ (NIH, Bethesda, MD, United States).
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2

Western Blot Analysis of Myogenic Signaling

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Protein was extracted from Ric10 myoblasts or myotubes with SDS-HBS (1% SDS/150 mM NaCl/10 mM HEPES, pH 7.4). After heat denaturing and sonication, the protein extract was mixed with the Laemmli sample buffer and boiled at 95 °C, for 5 min. Twenty micrograms of each sample were used for polyacrylamide gel electrophoresis, and then electroblotted using PVDF membrane. Following blocking with 5% skim milk/PBS-Tween20 (PBST), for 1 h at room temperature, the membrane was incubated with the primary antibody overnight at 4 °C. The following primary antibodies were used in this study: phosphorylated Smad2/3, Smad2/3, phosphorylated Foxo1a, phosphorylated Foxo3a, phosphorylated p70S6K, p70S6K, phosphorylated Akt, Akt, cleaved caspase-3, β-actin (1:1000, Cell Signaling Technologies, Danvers, MA, USA), Bax (1:500, Merck Millipore, Bedford, MA, USA), Myf5, and myogenin (1:200, Santa Cruz, CA, USA). The secondary antibodies used in this study were HRP-conjugated anti-rabbit IgG and anti-mouse IgG (1:4000, Cell Signaling Technologies).
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3

Molecular markers in EMT signaling

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Antibodies against CXCR7 (ABcam; ab38089), GAPDH (Santa Cruz Biotechnology, Dallas, TX, USA; sc-25778), E-cadherin (Cell Signaling Technology, Danvers, MA, USA; 3195), Ep-CAM (Santa Cruz Biotechnology; sc-25308), N-cadherin (Cell Signaling Technology; 13116), α-smooth muscle actin (Sigma Aldrich, St. Louis, MO, USA; A5228), Slug (Cell Signaling Technology; 9585), Twist (Santa Cruz Biotechnology; sc-81417), Vimentin (Cell Signaling Technology; 3932), phosphorylated-AKT at Ser473 (Cell Signaling Technology; 9271), AKT (Cell Signaling Technology; 9272), phosphorylated-ERK1/2 (Cell Signaling Technology; 9101), ERK1/2 (Cell Signaling Technology; 9102), phosphorylated-JNK (Cell Signaling Technology; 4668), JNK (Cell Signaling Technology; 9251), phosphorylated-p38 (Cell Signaling Technology; 9211), p38 (Cell Signaling Technology; 9212), TGF-β1 (Cell Signaling Technology; 3711), phosphorylated-Smad2/3 (Cell Signaling Technology; 8828), Smad2/3 (Cell Signaling Technology; 8685), MMP2 (ABcam; ab37150), and MMP9 (ABcam; ab38898) were used in Western blotting and immunofluorescence. Small interfering (si) RNAs for controls, CXCR7, and Smad2/3 were purchased from Santa Cruz Biotechnology and Thermo Fisher Scientific (St. Louis, MO, USA). For inhibition of protein kinases, LY294002 and wortmannin were purchased from Sigma Aldrich.
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4

Western Blot Analysis of EMT Markers

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Harvested cells were washed twice with cold PBS and then lysed using RIPA buffer (Beyotime, Shanghai, China) containing a protease inhibitor cocktail (Selleck, Shanghai, China). The lysates were centrifuged for 15 min at 12,000×g at 4°C and the supernatant was collected. The supernatant was boiled for 5 min and then separated by 10% SDS-PAGE gels. The proteins were transferred to a PVDF membrane (Millipore, Bedford, MA, USA), blocked with 5% milk, and incubated overnight with E-cadherin (Abcam, Cambridge, MA, USA), α-SMA (Abcam), TGF-β1 (Abcam), phosphorylated ERK1/2 (Cell Signaling Technology, Boston, USA), ERK1/2 (Cell Signaling Technology), phosphorylated Smad2/3 (Cell Signaling Technology), Smad2/3 (Cell Signaling Technology) and phosphorylated JNK (Cell Signaling Technology). Membrane was then washed three times in TBST and incubated with peroxidase-labelled secondary antibodies (Boster, Inc., Wuhan, China) for 2 h at room temperature. Following three washes in TBST, bands were visualized by western electrochemiluminescence (ECL) kit (Tanon, Shainghai, China) and then exposed to X-ray film. The band densities were quantified using the AlphaEaseFC image analyzer system (Alpha Innotech, Inc., CA, USA) and the results were expressed as ratio of band density to total GAPDH.
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5

Quantifying Protein Expression Changes

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Changes of protein levels were examined by Western blotting, as described in our previous study (Ye & Steinle, 2015 (link)). After transfer, the membrane was incubated with appropriate primary antibodies followed by treatment with secondary antibodies labeled with horseradish peroxidase. Antigen-antibody complexes were detected by chemilluminescence reagent kit (Thermo Scientific, Pittsburgh, PA). Primary antibodies used were TGF beta3, phosphorylated SMAD2/3, and SMAD2/3 (rabbit monoclonal, 1:500; all purchased from Cell Signaling, Danvers, MA), VEGF, ZO-1, and occludin (all from Abcam, Cambridge, MA), and beta actin (Santa Cruz Biotechnology, Santa Cruz, CA). Imaging was performed using C500 system (Azure Biosystems, Dublin, CA) within a linear range of exposure. beta actin was used to normalize signal intensity of protein bands.
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6

Western Blot Analysis of Apoptosis Markers

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Western Blots were conducted as previously described.30 (link) Tissue was lysed in radio-immunoprecipitation assay buffer (Boston BioProducts, Ashland, MA); 40ug were fractionated by sodium dodecyl sulfide polyacrylamide gel electrophoresis using 3%–8% Tris-Acetate gels (NuPage Novex Mini Gel), and the protein was transferred to polyvinylidene diflouride membranes (PVDF) (Millipore, Billerica, MA) and incubated overnight at 4 degrees C with primary antibodies against cleaved caspase 3, caspase 3, phosphorylated (serine 140) myeloid cell leukemia sequence-1 (p-MCL-1) , transforming growth factor-β (TGF-β), phosphorylated-SMAD2/3, matrix metalloproteinase-9 (MMP-9), apoptosis inducing factor (AIF) and heat shock factor-1 (HSF-1) (all from Cell Signaling, Danvers, MA). Twenty-four hours later, the membranes were incubated with the appropriate horseradish peroxidase-linked secondary antibody for 1h at room temperature (Jackson ImmunoResearch, West Grove, PA). Immune complexes were visualized with enhanced chemi-luminescence. Images were captured with a digital camera system (G-Box, Syngene, Cambridge, England). Image J software was used to quantify band densitometry as arbitrary light units. Loading error was controlled for by probing membranes with an antibody against GAPDH.
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7

Antibody Characterization for TGF-β Signaling

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CG200745 was generously donated by Crystal Genomics Inc. (Seoul, Rep. Korea). Anti-rabbit antibodies against TGF-β1 (polyclonal; Cell Signaling Technology, MA, USA), extracellular signal regulated kinases 1/2 (ERK 1/2), anti-phosphorylated ERK (p-ERK 1/2), anti-c-Jun N-terminal kinase (JNK), anti-phosphorylated JNK (p-JNK), anti-total p38, anti-phosphorylated p38 (p-p38), Smad2/3, and phosphorylated Smad2/3 (Cell Signaling Technology, MA, USA), anti-mouse antibodies against GAPDH (clone GAPDH-71.1;monoclonal), α-SMA (1A4 Clone; monoclonal; Sigma Chemical Co. St. Louis, MO, USA), fibronectin (BD Biosciences, San Jose, CA, USA), heme oxygenase-1 (HO-1, Abcam, Inc., Cambridge, MA, USA), and F4/80 (AbD Serotec, Raleigh, NC, USA) were commercially obtained.
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8

Western Blot Analysis of Cell and Tissue Samples

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A7r5 cells and mouse aortic tissue were lysed with RIPA buffer containing protease and phosphatase inhibitors under reducing condition. Protein content was measured with a Bradford assay. Protein samples and molecular weight standards were separated by 1‐dimensional gel electrophoresis. Proteins were transferred to polyvinylidene difluoride membranes, which were blocked for 2 hours in 5% nonfat dry milk dissolved in Tris‐buffered saline (pH 7.4) with 1% TWEEN 20. Membranes were then incubated in 5% nonfat dry milk for 2 hours at room temperature with antibodies to translin and trax, which were generated in our lab,21 phosphorylated‐SMAD2/3 (catalog no. 8828) and total‐SMAD2/3 (catalog no. 8685) from Cell Signaling Technologies (Danvers, MA); Hsp90 (catalog no. 610419, BD Transduction Laboratories, Franklin Lakes, NJ). Membranes were incubated with secondary antibody with the appropriate horseradish peroxidase–conjugated IgG in Tris‐buffered saline with 1% TWEEN 20 with 5% nonfat dry milk for 1 hour at room temperature. Immunoreactive proteins were visualized using an enhanced chemiluminescence reagent kit (catalog no. 34577, ThermoFisher Scientific). The signals emitted for chemiluminescence were detected with the iBright FL100 Imaging system (ThermoFisher Scientific), and band density was analyzed with ImageJ.
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9

Smad2/3 Phosphorylation Quantification in C3H10T1/2 Cells

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Three duplicated wells of C3H10T1/2 cells at passage 3 were prepared for protein extraction. Cell lysates were extracted using a modified radioimmunoprecipitation assay (RIPA) lysis buffer that contained 1 mM phenylmethylsulfonyl fluoride (PMSF) and a protease inhibitor cocktail (Cell Signaling Technology, USA). Following centrifugation at 12000g for 30 minutes, the supernatant was collected to detect the total protein concentrations using a BCA Protein Assay kit (Thermo Scientific, USA). Protein extracts were boiled for 5 minutes in loading buffer. Then, 40 μg protein was loaded and electrophoresed on a sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) gel and transferred to a polyvinylidene difluoride (PVDF) membrane. The membrane was blocked in a 5% skim milk solution and incubated with primary antibodies overnight at 4°C. The primary antibodies were β-actin (Sigma, A1978), Smad2/3 (Cell Signaling Technology, #8685), and phosphorylated-Smad2/3 (Cell Signaling Technology, #8828). The membrane was then incubated with a fluorescent secondary antibody (LI-COR, 926-32212) (1/1000), for 1 hour at room temperature (Vector Laboratories, Burlingame, VT, USA). The blots were visualized using a LI-COR Odyssey® scanner (LI-COR Biosciences, USA). The relative density of the p-Smad2/3 bands was normalized to their corresponding actin bands.
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10

Investigating TGFβ Receptor Signaling Pathway

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Cells were divided into four groups as follows: negative control siRNA (NC siRNA), NC siRNA + BSHX, Tgfβr2 siRNA, and Tgfβr2 siRNA + BSHX. All cells were lysed in lysis buffer to obtain total protein extracts, respectively. After being incubated on ice for 30 min, the extracts were separated with 12% SDS-PAGE gel and transferred to PVDF membranes. The membranes were then blocked in 5% milk for 1 h and incubated with different primary antibodies against phosphorylated-SMAD2/3 (diluted 1:1000, Cell Signaling Technology, #8828, USA) and SMAD2/3 (diluted 1:1000, Cell Signaling Technology, #8685, USA) overnight at 4°C. Next day, the membranes were incubated with goat anti-rabbit horseradish peroxidase-conjugated secondary antibody (diluted 1:5000; Abcam, ab6721, USA) at room temperature for 1 h. The densities of the bands were visualized by chemiluminescence.
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