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15 protocols using alfa aesar

1

Synthesis and Characterization of Polymeric Surfactants

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Acrylamide (AM, 98%, Fluka, Buchs, Switzerland), glacial acetic acid (99.5%, Acros Organics, (Thermo Fischer), Geel, Belgium), and aqueous sodium hydroxide (1 M, Acros Organics) were used as received. The polyethoxylate surfactants included 4-(1,1,3,3-tetramethylbutyl)phenyl-polyethylene glycol (Triton X-100, Acros Organics), poly(oxyethylene)-23 lauryl ether (Brij 35, Sigma-Aldrich, St. Louis, MI, USA), and ethylene oxide-propylene oxide copolymer mono(2-ethylhexyl) ether (Ecosurf EH-3 (= EO3) or EH-9 (= EO9), Stockmeier Chemie GmbH & Co. KG, Bielefeld, Germany). Acryloyl chloride (96%, Alfa-Aesar, (Thermo Fischer), Heysham, UK), trimethylamine (TEA) (99%), and methacrylic acid (MAA) (99%, Sigma-Aldrich) were freshly distilled before use. Azobisisobutyronitrile (AIBN, 98%, Acros Organics) was recrystallized from methanol. Organic solvents, including xylene (Riedel & Haen, (Honeywell), Morristown, NJ, USA), ethyl acetate (EA, Sigma-Aldrich), ethanol (Merck, Darmstadt, Germany), and industrial methylated spirit (denaturated ethanol, IMS, Sigma-Aldrich), were used as received. Varnished substrates were made of polycyclohexanone (Laropal® K80, BASF, Ludwigshafen, Germany) resins. Pure DI water of low conductivity (8 μS/cm) at pH 6.4 was utilized.
1H-NMR (Bruker AMX-300 spectrometer, Billerica, MA, USA) confirmed identity of the synthesized monomers and polymers.
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2

Paramagnetic Cellulose Particle Preparation

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Cellulose is a major fraction of particulate organic matter in domestic wastewater as it originates from toilet paper (Ruiken et al., 2013 (link)). A dispersion of the base product (Alfa Aesar, Thermo Fisher Scientific GmbH, Karlsruhe, Germany) was sonicated and wet sieved to collect a size fraction between 1 and 20 μm. For paramagnetic tagging, MCPs have been suspended in a 50 g/L ferrous sulphate solution under anoxic conditions. After draining, the iron(II) saturated microcrystalline cellulose particles were dried at room temperature over night to allow for a complete oxidation of the often diamagnetic iron(II) to paramagnetic iron(III). No mobilization of iron(III) ions was recognized later on.
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3

Cell Viability Assay with MTT

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Cells (8000 cells per well) were seeded in 96-well cell culture plates (TPP Techno Plastic Products AG, Trasadingen, Switzerland) overnight to allow attachment before being treated with the appropriate reagents for 24 h. Cell viability was evaluated using the colorimetric MTT assay (Alfa Aesar, Thermo Fisher Scientific, Leicestershire, UK) following the manufacturer’s instructions. Briefly, cells were incubated in culture media containing 0.4 mg/ml of MTT reagent for 2.5 h in a humidified incubator at 37 °C and 5% CO2. The medium was then carefully removed and the formazan crystals were dissolved in DMSO (Sigma-Aldrich) at 37 °C for 40 min. The absorbance was measured at 550 nm against a reference wavelength of 650 nm using a microtiter plate reader (Bio-Rad Hercules, CA, USA). The half maximal inhibitory concentration (IC50) values were calculated from the nonlinear regression curves of cell survival constructed by plotting the percentage of cell viability versus the logarithm of drug concentrations using GraphPad Prism 9 software (GraphPad Inc., San Diego, CA, USA).
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4

Lisinopril Quantification using Fluorescamine

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Lisinopril was obtained as a gift from Sedico Company For Pharmaceutical Industries (Cairo, Egypt) and it was used without further treatment. Fluorescamine (Sigma-Aldrich Chemie GmbH, Germany) and (Alfaaesar, ThermoFisher, Germany) was prepared as 0.2 mg mL−1 in acetone. Other chemicals such as ethanol, methanol, acetone, acetonitrile, dimethylformamide, sodium hydroxide, hydrochloric acid and boric acid were obtained from El Nasr chemical Co, Cairo, Egypt. Borate buffer was prepared by mixing 0.1 M boric acid and 0.1 M sodium hydroxide in amounts that are sufficient to produce pH 9.5. All of the materials were of analytical grade.
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5

Transmission Electron Microscopy of C6/36 EV Isolates

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The C6/36 EV isolates were fixed with a 1:1 mixture of 2.5% glutaraldehyde (Electron Microscopy Sciences [EMS], Hatfield, PA, USA) and 4% paraformaldehyde (Sigma) for 2 h at RT and washed three times (5 min each) with PBS. After fixation, the samples were incubated with 2% osmium tetroxide (Alfa Aesar, Thermo Fisher Scientific) for 90 min at RT. The fixed pellets were washed three times with PBS and dehydrated in an ascending graded series of ethanol (30, 50, 70, 80, 90, and 96%), including three passes (5 min each) in absolute ethanol (J.T.Baker) at RT. Three passes (5 min each) in propylene oxide (Sigma-Aldrich) at RT were then performed. The samples were placed in a 1:1 mixture of propylene oxide/epoxy resin for 18 h at RT and embedded in pure epoxy resin (EMS) at 60 °C for 48 h. Ultrathin sections (40–50 nm thick) were obtained in an ultramicrotome (Leica EM UC7, Leica Microsystems, Buffalo Grove, IL, USA) and mounted on copper grids (EMS) covered with formvar (EMS). The sections were contrasted with uranyl acetate (Merck, Kennerworth Fort, NJ, USA) for 30 min and lead citrate (EMS) for 10 min at RT. The preparations were observed with a transmission electron microscope (JEM1010 model; JEOL, Peabody, MA, USA) operating at 80 kV. The images were captured with a CCD300-RC camera (DAGE-MTI, Michigan City, IN, USA) adapted to the microscope and analyzed with ImageJ software.
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6

Zinc Supplementation in Polymicrobial Sepsis

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Prior to induction of polymicrobial sepsis, we supplemented juvenile mice with 10 mg/kg zinc gluconate solution (Alfa Aesar; Thermo Fisher Scientific, Waltham, MA, USA), via once-daily i.p. injections using 27-gauge needles, for 3 d prior to cecal slurry administration. This dose was selected based on our prior experience and established efficacy in previously published experiments.14 (link) Mice in the control group were administered an equal volume of PBS. We prepared and stored all solutions in a sterile manner, and warmed them to 37°C prior to injection.
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7

Fabrication of GNP/PDMS Composite Surfaces

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To prepare GNP/PDMS surfaces, commercially available GNPs aggregates (Alfa Aesar, Thermo Fisher Scientific, Erlenbachweg, Germany), PDMS elastomer (Sylgard 184 Part A, Dow Corning, Midland, MI, USA), and curing agent (Sylgard 184 Part B, Dow Corning) were used.
The GNP/PDMS composites were produced through a bulk mixing process by incorporation of GNPs into the PDMS base elastomer (Part A) as detailed by Vagos et al. [44 (link)]. The GNPs were first incorporated at different loadings (1, 2, 3, 4, and 5 wt%) to determine the most efficient GNP load to decrease bacterial biofilm formation. To improve the GNP dispersion, the mixture was stirred for 30 min at 500 rpm and then sonicated (Hielscher UP400S, at 200 W and 12 kHz) for 60 min. After that, the composites were kept in an ultrasound bath (Selecta Ultrasons, Lisbon, Tecnilab, Portugal) for 30 min to remove the remaining air bubbles. At that point, the curing agent (Part B) was added to the elastomer/GNP mixture (in an A:B ratio of 10:1) and gently shaken. The GNP composites were placed as a thin layer on top of glass slides (1 x 1 cm, Vidraria Lousada, Lda, Lousada, Portugal) through spin coating (Spin150 PolosTM, Caribbean, The Netherlands) for 1 min with a 500 rpm ramp to 6000 rpm. Likewise, PDMS surfaces were produced as control [45 (link)].
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8

Torsional Biomechanics of Femoral Bone

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Femora excised at 12 weeks were biomechanically tested in torsion to failure. Limbs were cleaned of soft tissue, and fixation plates were carefully removed. Bone ends were potted in Wood’s metal (Alfa Aesar, Thermo Fisher Scientific), mounted on a Mark-10 TSTM-DC test stand with an MR50-12 torque sensor (1.35 N-m) and a 7i torque indicator (Mark-10 Corp., Copiague, NY) using custom fixtures and tested to failure at a rate of 3°/s. For each sample, maximum torque at failure was recorded, and torsional stiffness was computed as the slope of the linear region in the torque-rotation curve. Samples were compared to three age-matched, unoperated femurs.
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9

Purification and Characterization of Organic Compounds

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All solvents and reagents were purchased from Sigma-Aldrich, Castle Hill, Sydney, Australia and Alfa-Aesar (Thermo Fisher Scientific Australia Pty. Ltd.), Scoresby, Victoria, Australia and used without any further purification or treatment. Thin layer chromatography was performed on Merck 60F-254 silica gel plates. Flash chromatography was performed on GRACE Reveleris X2 (In Vitro Technologies Pty. Ltd., Noble Park, Victoria, Australia). 1H and 13C-NMR spectra were acquired on a Varian 400MR (Varian Australia Pty. Ltd., Mulgrave, Victoria, Australia) at 400 MHz and 100 MHz, respectively. Coupling constants (J) are in Hertz (Hz), chemical shifts (δ) are expressed in parts per million (ppm) and reported relative to tetramethylsilane (TMS) or relative to residual solvent peaks. Low resolution mass spectra were obtained on a Thermo Scientific TSQ Quantum Access Max LCMS/MS&TLX1 Turboflow Chromatography System (Thermo Fisher Scientific Australia Pty. Ltd.), Scoresby, Victoria, Australia) in positive ion mode.
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10

Reagents and Solvents Acquisition for Research

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Suppliers for chemical products and solvents were: Alfa Aesar (ThermoFisher Scientific-Alfa Aesar, Kandel, Germany) for choline chloride, fructose, glycerol, citric acid, tartaric acid, and glucose, VWR (VWR International Srl; Milan, Italy) for analytical grade hexane. Milli-Q water purification system from Merck-Millipore (Darmstadt, Germany) was employed to obtain deionized water.
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