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Revertra ace qrt pcr kit

Manufactured by Toyobo
Sourced in Japan

The ReverTra Ace qRT-PCR kit is a real-time reverse transcription PCR (qRT-PCR) kit designed for the quantification of RNA targets. The kit includes reagents for cDNA synthesis and real-time PCR amplification. It is suitable for the detection and quantification of various RNA species, including mRNA, miRNA, and long non-coding RNA.

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19 protocols using revertra ace qrt pcr kit

1

Quantitative Real-Time RT-PCR Analysis

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Total RNA was extracted from 100 mg of root tissue using an RNA extraction kit (Tiangen, Shanghai, China) and reverse transcribed using a ReverTra Ace qRT-PCR kit (Toyobo, Tokyo, Japan) according to the manufacturer’s instructions. The qRT-PCR was performed using the LightCycler 480 RT PCR system (Roche, Basel, Switzerland), as described earlier (Wang et al., 2019 (link)). The PCR program was performed using pre-denaturation at 94°C for 3 min, followed by 40 cycles of 94°C for 30 s, 58°C for 30 s, 72°C for 30 s, and then a final extension at 72°C for 5 min. Relative gene expression was calculated as described previously (Livak and Schmittgen, 2001 (link)). Three biological replicates were analyzed. The primers specific for target genes and the internal control ACTIN gene are presented in Supplemental Table S2.
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2

Quantifying Gene Expression via qRT-PCR

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Total RNA was isolated from the sample using TRIzol® reagent (Qiazen, Valencia, CA, USA). RNA purity and concentration were measured with a Nanodrop. The RNA was reverse transcribed using a ReverTra Ace® qRT-PCR Kit (TOYOBO, Kita-ku, Osaka, Japan) following the manufacturer’s protocol. PCR was performed to assess expression of the candidate genes using primers designed for mRNA sequences. In addition, mRNA expression was assessed using real-time PCR with a SYBR Green PCR Master Mix kit (Bioline USA Inc., Taunton, MA, USA) and CFX96 Touch™ Real-Time PCR Detection System (Biorad, USA). The 2−ΔΔCt method was used to analyze the relative changes in gene expression from real-time quantitative PCR experiments. GAPDH was used as an internal control gene. The primer sequences for qRT-PCR are listed in Table 1.
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3

Quantifying PTX3 mRNA Expression

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Total RNA was isolated using TRIzol reagent (Invitrogen, Grand Island, NY, USA). The cDNA was synthesized using the ReverTra Ace qRT-PCR kit (Toyobo, Osaka, Japan). The qRT-PCR was performed using the SYBR Green PCR master mix (Kapa Biosystems, Woburn, MA, USA). Primer sequences were as follows: PTX3, 5′-TTGGACAACGAAATAGACAATGGA-3′ and 5′-GTCGTCCGTGGCTTGCA-3′; GAPDH, 5′-CCCTCCAAAATCAAGTGG-3′ and 5′-CCATCCACAGTCTTCTGG-3′. The qRT-PCR reactions were processed on a CFX96 Real-Time PCR System (Bio-Rad, Hercules, CA, USA). Thermal conditions were as follows: stage 1, 50 °C for 2 min and 95 °C for 10 min; stage 2, 95 °C for 15 s and 60 °C for 1 min. Stage 2 was repeated for 40 cycles. The comparative CT method was used to calculate the relative level of PTX3 mRNA after normalizing against the level of GAPDH in the same sample.
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4

Quantification of NLRP3 and Inflammatory Cytokines

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Total RNA was extracted with TRIzol reagent (Tiangen, China) according to the manufacturer's protocol. The mRNA was then transcribed into cDNA using ReverTra Ace® qRT-PCR Kit (Toyobo, Japan). The cDNA abundance was measured by quantitative real-time PCR (qRT-PCR) using SYBR® Green Real-Time PCR Master Mix on CFX96 Touch™ Real-Time PCR Detection System (Bio-Rad, USA). Then, qRT-PCR was performed to quantitate the mRNA of Nlrp3, IL-1β, IL-18, and actin. The sequences of primers used for PCR were as follows: 5′-ATCAACAGGCGAGACCTCTG-3′ and 5′-GTCCTCCTGGCATACCATAGA-3′ for Nlrp3; 5′-GAAATGCCACCTTTTGACAGTG-3′ and 5′-TGGATGCTCTCATCAGGACAG-3′ for IL-1β; 5′-GACTCTTGCGTCAACTTCAAGG-3′ and 5′-CAGGCTGTCTTTTGTCAACGA-3′ for IL-18; 5′-ACAAGGCACGGGACCTATG-3′ and 5′-TCCCAGTCAGTCCTGGAAATG-3′ for caspase-1; 5′-GGGAAATCGTGCGTGACATCAAAG-3′ and 5′-CATACCCAAGAAGGAAGGCTGGAA-3′ for β-actin. Primer specificity was determined by melt curve analysis. Actin was used as the endogenous control to estimate other genes. The results are presented as fold induction over levels in untreated control cells. Relative gene levels were calculated according to the comparative Ct method formula 2−ΔΔCt.
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5

Quantitative RT-PCR Analysis of miR-30a-5p and ANLN

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The TRIzol (Invitrogen, Carlsbad, CA, USA) was employed to extract total RNA. ReverTra Ace qRT-PCR kit (Toyobo, Osaka, Japan) was used for RNA reverse transcription to acquire cDNA. qRT-PCR was performed on the products with THUNDERBIRD SYBR® qPCR Mix (Toyobo, Osaka, Japan). PCR procedures were predenaturation at 94°C for 2 min, denaturation at 94°C for 30 sec, annealing at 56°C for 30 sec, extension at 72°C for 1 min, repeat the previous procedure for 30 times, and continuous extension at 72°C for 10 min. U6 and β-actin were selected as internal references for miR-30a-5p and ANLN, respectively. Results were shown by 2-ΔΔCt value. Primer sequences are presented in Table 1.
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6

qRT-PCR Analysis of Target Genes

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To synthesis cDNA, total RNA from diluted stocks of the same RNA that was subjected to RNA-seq was used in each reverse transcription reaction using the ReverTra Ace qRT-PCR Kit (Toyobo, Japan). qRT-PCR was performed using SYBR-Green chemistry and the iCycler iQ™ Real-Time PCR Detection System (Bio-Rad, Hercules, CA, USA) [32 (link)]. The primers used to amplify the targeted genes were designed using Primer Premier 5.0 (Additional file 3: Table S2). Melting curve analysis of the PCR products was conducted at the end of each PCR cycle to verify the amplicon specificity. The mRNA expression levels of the target genes were normalized relative to the expression of the housekeeping gene actin2 to minimise sample variation. All qRT-PCR reactions were repeated with three independent biological replicates and two technical replicates. The data were analysed based on the method of Livak and Schmittgen [33 (link)].
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7

Prefrontal Cortex and Hippocampus RNA Extraction

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Total RNA was extracted from the prefrontal cortex and hippocampus using TRIzol (Invitrogen) according to the manufacturer’s instructions. 1 µg RNA was reverse-transcribed into cDNA using the ReverTra Ace qRT-PCR kit (Toyobo). Real-time PCR was performed using the SYBR Premix MASTER Kit (Roche) with a LightCycler 480 Instrument (Roche). All data for each sample were collected in triplicate. Standard curves were generated, and the relative amount of miRNA was normalized to the amount of U6 (2−ΔΔCt).
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8

RNA Extraction and Real-Time PCR Analysis

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Total RNA was isolated using RNAiso Plus (9108, Takara). Total RNA (0.5–1 μg) was reverse-transcribed with a ReverTraAce qRT-PCR kit (FSQ-101, Toyobo) according to the manufacturer's protocol to synthesize cDNA. Real-time PCR was performed using a SYBR Premix Ex TaqTM Kit (QPK-201, Toyobo) with specific primers. The reactions were performed by using a Lightcycler 2.0 instrument (Roche Applied Science). The mRNA levels were normalized to GAPDH. All data for each sample were collected in triplicate. The fold changes were calculated by relative quantification (2−ΔΔCt). The specific primers used in the present study are listed in Supplementary Table 1.
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9

Quantitative RT-PCR Analysis of miRNA Expression in Glioma Cell Lines

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Q-PCR was conducted to measure the expression levels of U251 and U87 cells. Total RNA was isolated using RNAiso Plus (9108, Takara). Total RNA (0.5–1 μg) was reverse-transcribed with miR224-3p, miR210 stem-loop and U6 snoRNA RT primers (RiboBio, Guangzhou, China) using a ReverTraAce qRT-PCR kit (FSQ-101, Toyobo) according to the manufacturer's protocol to synthesize cDNA. Real-time PCR was performed using a SYBR Premix Ex TaqTM Kit (QPK-201, Toyobo) with miR224-3p, miR210 and U6 snoRNA primers (miRQ0009198-1-1 for miR224-3p, miRQ0000267-1-1 for miR210, MQP-0201 for U6, RiboBio) as previously described [21 (link), 52 (link)]. The reactions were performed using a Lightcycler 2.0 instrument (Roche Applied Science). mRNA levels were normalized to GAPDH. U6 expression was used as the endogenous control for miRNA level. All data for each sample were collected in triplicate. The fold changes were calculated by relative quantification (2−ΔΔCt). The primers used in the present study are listed in Supplementary Table S1.
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10

Quantitative RT-PCR for Gene Expression

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Total RNA was extracted from cells or frozen mouse tissues using a TRIzol reagent (Invitrogen). cDNA samples were produced using the ReverTra Ace qRT-PCR Kit (TOYOBO). qPCR-RT was performed by the SYBR green method using a Thunderbird qPCR Mix (TOYOBO) and a StepOne Plus Sequence Detector (Applied Biosciences). Data are presented as the mean ± standard deviation (SD). Fold differences among groups were calculated by the ΔΔCt method. 36B4 (Rplp0) gene was used as an internal control. The primers are listed in Supplementary file 3.
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