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5 protocols using a5795

1

Antibody Panel for TGF-β1 and MMPs

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The recombinant protein for human TGF-β1 (#P01137) and mouse monoclonal antibodies against human TIMP-1 (#MAB970), TIMP-3 (#MAB973), MMP-2 (#MAB9022), and MMP-9 (#MAB911) were acquired from R&D Systems, Inc (MN, USA). The rabbit polyclonal antibodies against CTGF (#ab6992), fibronectin (#ab2413), and α-SMA (#ab5694) were acquired from Abcam Inc. (Cambridge, UK). The mouse monoclonal antibodies against p38 (#ab31828), p38 phosphorylation (p-p38, #ab4822), JNK (#ab208035), JNK phosphorylation (p-p38, #ab76572), ERK (#ab184699), and ERK phosphorylation (p-p38, #ab201015) were all acquired from Abcam Inc. (Cambridge, UK). The secondary antibodies against rabbit (#A5795) and mouse (#A9044), as well as GAPDH (#G5262) and β-actin (#A5441), were acquired from Sigma-Aldrich (St. Louis, MO, USA) [6 (link)].
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2

Optimized Protein Interaction Assays

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IP assays and Western blottings were carried out as previously described (Laporte et al., 2011 (link); Lee and Wu, 2012 (link); Wang et al., 2014 (link)) with the following modifications: 1) 200 mg (Figure 2C) and 40 mg (Figure 9C) of lyophilized cells for each strain were used for IPs and Western blottings, respectively, due to the low abundance of Gef3; 2) The monoclonal anti-Myc antibody (1:1000 dilution; 9E10; Santa Cruz Biotechnology, Santa Cruz, CA) was used to detect Gef3-13Myc. Rho GTPases were detected by monoclonal anti-GST antibody (3G10/1B3, 1:10,000 dilution; NB600-446; Novus Biologicals, Littleton, CO). A monoclonal antibody against FLAG (1:2000 dilution; F1804; Sigma-Aldrich) was used to detect 3FLAG-Gef3, and 6His-Gef3 was detected by anti-His antibody (1:10,000 dilution; 631212; Clontech, Mountain View, CA). Secondary anti-mouse antibody was used at 1:10,000 dilution for all the primary antibodies mentioned. In addition, triple-hemagglutinin (HA)–tagged wt and mutant Rho4 were detected by anti-HA antibody (1:2000 dilution; 3F10; Roche, Mannheim, Germany), and a secondary anti-rat antibody (A5795; Sigma-Aldrich) was used at 1:4000 dilution.
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SARS-CoV-1 Spike and Nucleocapsid Protein Detection

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BHK cells infected at 5 MOI were harvested 24 h post infection. Proteins were solubilized in PBS with 0.1% Triton X-100, supplemented with protease inhibitor, then reduced and denatured in Laemmli buffer containing DTT and boiled at 95 °C for ~10 min. Proteins were resolved on a 4–20% Mini Protean TGX gradient gel (BioRad) and transferred onto PVDF membrane. S protein was probed with anti-SARS-CoV-1 S1 subunit rabbit polyclonal antibody at a dilution of 1:1300 (40150-T62-COV2, Sino Biological); N protein was probed with anti-SARS-CoV1 NP rabbit polyclonal antibody (40413-T62, Sino Biological) was used at dilution of 1:10,000. Vaccinia B5R protein was probed as a loading control using 19C2 (ref. 58 (link)) rat monoclonal antibody (hybridoma supernatant) at a dilution of 1:20. Anti-rabbit IgG polyclonal antibody and anti-rat IgG polyclonal antibody conjugated with horseradish peroxidase (A6154 and A5795, Sigma-Aldrich) were used as a secondary antibody at a dilution of 1:5000 and 1:3300, respectively. Protein bands were visualized with a chemiluminescent substrate (Thermo Fisher Scientific).
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Characterizing TGF-β and CTGF Proteins

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The recombinant human TGF-β1 (#P01137) and TGF-β2 (#P61812) were purchased from R&D Systems, Inc. (Minneapolis, MN, USA), and the recombinant human CTGF protein (#PHG0286) was purchased from Thermo Fisher Scientific Inc. (Waltham, MA, USA). The rabbit polyclonal antibodies against the CTGF (#ab6992), Fibronectin (#ab2413) and α-SMA (#ab5694) were acquired from Abcam Inc. (Cambridge, UK). The secondary antibodies against rabbit (#A5795) and mouse (#A9044), and β-actin (#A5441) were purchased from Sigma-Aldrich (St. Louis, MO, USA).
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5

Profibrotic Signaling Pathway Modulators

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Pirfenidone (#P2116) and the secondary antibodies against rabbit (#A5795) and mouse (#A9044) were acquired from Sigma-Aldrich (St. Louis, MO, USA). The human TGF-β1 recombinant protein (#P01137) and the mouse monoclonal antibodies against TIMP-1 (#MAB970) were acquired from R&D Systems, Inc. (Minneapolis, MN, USA). Antibodies including the rabbit polyclonal antibodies against CTGF (#ab6992), fibronectin (#ab2413), collagen type I (#ab34710), and α-SMA (#ab5694), the mouse monoclonal antibodies against p38 (#ab31828), p38 phosphorylation (p-p38, #ab4822), JNK (#ab208035), and JNK phosphorylation (p-p38, #ab76572) were all purchased from Abcam Inc. (Cambridge, UK).
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