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Superrt cdna kit

Manufactured by CWBIO
Sourced in China

The SuperRT cDNA Kit is a laboratory product designed for the reverse transcription of RNA to complementary DNA (cDNA). It provides the necessary reagents and protocols to efficiently convert RNA samples into high-quality cDNA, a crucial step in various molecular biology applications.

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15 protocols using superrt cdna kit

1

Quantitative PCR Analysis of mRNA Levels

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Isolated mRNAs were reverse transcribed by using SuperRTcDNA Kit (CWBIO, Beijing, China). Quantitative real-time PCR analyses on the mRNAs were performed by using the SYBR Green Real-time PCR Master Mix (CWBIO) in a Bio-Rad IQTM5 Multicolor Real-Time PCR Detection System (Bio-Rad, Hercules, CA, USA). The thermal cycling program was set as follows: 95 °C for 10 min, followed by 40 cycles of 95 °C for 15 s and annealing/elongation at 60 °C for 1 min. The mRNA levels of target genes were normalized to the β-actin mRNA levels. The primers used in this were synthesized by Invitrogen (Shanghai, China) and the sequences were showed in Supplementary Table S6.
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2

Quantitative RT-PCR Analysis of Gene Expression

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Total RNA was isolated from the integument using TRIzol reagent (Invitrogen, Carlsbad, CA, USA). 2 μg of the RNA was reverse-transcribed to cDNA using the SuperRT cDNA Kit (CWBIO, Beijing, China). qRT-PCR was performed on a Stratagene MX3000P qPCR system (Stratagene, Santa Clara, CA, USA), according to the manufacturer’s instructions. All the primers used in this study were shown in the Additional file 1: Table S8. The fungal 18S ribosomal RNA (rRNA) was also included as the internal amplification control [20 (link)]. Relative gene expression levels were calculated using the 2–ΔΔCT method [63 (link)]. The obtained data were from three biological replicates, with three technical replicates each. The resulting data were statistically analyzed using one-way analysis of variance (ANOVA), followed by Tukey’s test (P < 0.05). All the statistical analyses and visualizations were performed using the Graphpad prism 7 or R platform.
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3

Influenza Virus Subtyping and Genome Sequencing

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Viral RNA was extracted from infected allantoic fluid using the RNeasy Mini Kit (Qiagen), and reverse transcribed using the Uni12 primer (5′-AGCAAAAGCAGG-3′) with the SuperRT cDNA Kit (CWBIO, Beijing, China). Isolate subtyping was performed by PCR using 16 sets of HA (H1–H16) primers and 9 sets of NA (N1–N9) primers designed by the Chinese National Influenza Center. Complete genome amplification was performed using specific primers (primer sequences available on request) with 2× Es Taq MasterMix Kit (CWBIO). PCR products of the expected sizes were purified using a QIAquick PCR purification kit (Qiagen). Sequencing was performed using the BigDye Terminator v3.1 Cycle Sequencing Kit with an ABI PRISM 3700xl DNA Analyzer (Applied Biosystems), following the manufacturer’s instructions.
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4

Quantitative Real-Time PCR Workflow

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A total of 1.2 μg of RNA was used for cDNA synthesis using the SuperRT cDNA Kit (CWBIO, China). Quantitative real-time PCR (qPCR) was performed on a QuantStudio 12 K Flex Real-time PCR System (Applied Biosystems, USA). The ribosomal protein S3 (rpS3) gene was used as the reference gene [97 (link)]. The qPCR conditions were 95 °C for 30 s, followed by 40 cycles of 95 °C for 5 s and 60 °C for 30 s. Three biological replicates were performed for each treatment, and each biological replicate was carried out in triplicate. The expression levels of genes were calculated using the 2−ΔΔct method, and One-way ANOVA with Tukey's post hoc test was used for statistical analysis. The primers used in the qPCR are described in Additional file 10: Table S10.
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5

RNA Extraction and cDNA Synthesis

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Total RNA was extracted using TRIzol reagent (Invitrogen) according to the manufacturer's instructions. RNA was reverse transcribed using SuperRT cDNA kit (CW Biotech, Beijing, China). Primers for CYLD (forward: 5′-GAAGGTCGTGGTCAAGGT-3′ reverse: 5′-GAATCTGTTCTCGGTGGT-3′) were synthesised by Sangon Biotech.
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6

RNA Extraction and Protein Analysis of Xenograft Tumors

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Total RNA was isolated from frozen xenograft tumor specimens in all treated groups using the Trizol Reagent (Invitrogen, Grand Island, NY, USA). The cDNA was produced by Super RT cDNA kit (CWBio, Beijing, China) following the instructions. RT-PCR was performed using RealMasterMix (SYBR Green, TIANGEN, Beijing, China). Relative gene expression was established according to the 2(−ΔΔCT) method.
The tumor tissues of all groups were dislocated by sonication and extracted at 4 °C for 30 min. Whole-cell protein lysates were separated by electrophoresis through a 12% SDS-PAGE gels, and then, proteins were transported onto a polyvinylidene fluoride membrane (PVDF). The membrane was incubated with primary antibodies including DR5 (1:50,000, Abcam, Cambridge, MA, USA), DR4 (1:1000, Abcam) and GAPDH (1:2000, ZSGB-BIO, Beijing, China). Primary antibodies were exposed using goat anti-rabbit horseradish peroxidase-link secondary antibodies (1:5000, SANTA CRUZ BIOTECHNOLOGY, Dallas, TX, USA). The detection of specific proteins was exposed to Kodak-X-Omat films carried out using ECL Western Blotting Substrate (Thermo Fisher Scientific, Waltham, MA, USA).
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7

Comprehensive Gene Expression Analysis

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Total RNA Extraction, RT-PCR, and qPCR were performed as previously described (3 (link)). Total cellular RNA was extracted with the Ultrapure RNA kit (CW Biotech Co., Beijing, China). First-strand cDNA was synthesized with oligo (dT) primers (Sangon Biotech. Shanghai, China) and the Super RT cDNA kit (CW Biotech Co.). The primer sequences were as follows: E-cadherin forward: 5′-GAGAACGCATTGCCACATACAC-3′, reverse: 5′-GAGCACCTTCCATGACAGACCC-3′; vimentin forward: 5′-ATGTGGATGTTTCCAAGCCTGAC-3′, reverse: 5′-GAGTGGGTATCAACCAGAGGGAGT-3′; HIF-1α forward: 5′-CACTGCACAGGCCACATTCACGT-3′, reverse: 5′-GAGCACCTTCCATGACAGACCC-3′; STAT3 forward: 5′-GAGAACGCATTGCCACATACAC-3′, reverse: 5′-TCTGGCCGACAATACTTTCC-3′; and β-actin forward: 5′-GTCCACCGCAAATGCTTCTA-3′, reverse: 5′-TGCTGTCACCTTCACCGTTC-3′. Products from RT-PCR were monitored by polyacrylamide gel electrophoresis (PAGE). qPCR was performed using the UltraSYBR Mixture (CW Biotech Co.) and ABI 7300 Real-time PCR system. To normalize the amount of input RNA, PCR was performed with probe and primers for β-actin.
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8

Influenza Virus Genome Amplification

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Virus RNA was extracted from allantoic fluid using the RNeasy Mini kit (Qiagen, Hilden, Germany) and was transcribed into complimentary DNA (cDNA) using the Uni12 primer (5′-AGC AAA AGC AGG-3′) and SuperRT cDNA kit (CWBIO, Beijing, China) according to the manufacturers' recommendations. cDNAs of eight segments were then amplified with gene specific primers designed by the Chinese National Influenza Center (primer sequences are available upon request). The PCR reaction contained 2 μL cDNA, 1 μL forward primer and reverse primer, 12.5 μL 2 × EsTaq MasterMix (CWBIO, Beijing, China) and 8.5 μL RNase-free water with a final volume of 25 μL. A single PCR program was used for all primers, i.e., initial denaturation at 94 °C for 2 min, 35 cycles of denaturation at 94 °C for 30 s, annealing at 55 °C for 30 s, and extension at 72 °C for 1 min and 30 s.
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9

Evaluating NAC and PAT Cytotoxicity Mechanisms

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N-Acetyl-1-cysteine (NAC, purity ≥ 98%) and patulin (PAT, purity ≥ 99%) were supplied by Sigma-Aldrich (St. Louis, MO, USA). The LDH-assay kit, ROS assay kit, total SOD assay kit, annexin V–FITC apoptosis assay kit, Hoechst 33342 dyes, GSH and GSSG assay kit, GR assay kit, total GPx assay kit, ATP assay kit, mitochondrial membrane potential (MMP) assay kit, the assay kits of caspase 3, 8, and 9, and BCA protein-assay kit were obtained from Beyotime Institute of Biotechnology (Beijing, China). MitoSOX Red Mitochondrial Superoxide Indicator was purchased from Invitrogen Corporation (St. Louis, MO, USA). The CAT test kit was obtained from Jiancheng Bioengineering Institute (Nanjing, Jiangsu, China). The Ultrapure RNA kit, Super RT cDNA kit, and UltraSYBR mixture were purchased from CWBIO (Beijing, China).
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10

Quantitative RT-PCR for Ischemic Brain

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Total RNA was extracted from the cortex of the ischemic hemisphere using RNApure Tissue Kit (CWbio Co., Ltd., Beijing, China) according to the manufacturer's protocol. The quantity of total RNA was measured using Nano-Drop 2000 (Thermo, MA, USA). Reverse transcription was performed using SuperRT cDNA Kit (CWbio Co., Ltd.). Quantitative RT-PCR was carried out on a ABI 7500 real-time fluorescence quantitative PCR apparatus (Applied Biosystems, Foster City, CA, USA) using a UltraSYBR Mixture (With ROX) kit (CWbio Co., Ltd.). Amplification procedure was as follows: 95°C for 10 minutes, 45 cycles of 95°C for 15 seconds and 60°C for 60 seconds. The oligonucleotide primer sequences were designed as follows: HO-1 (92 bp), forward: TCA CTG GCA GGA AAT CAT CC, reverse: CTG AGA GGT CAC CCA GGT A; GADPH (138 bp), forward: TGG AGT CTA CTG GCG TCT T, reverse: TGT CAT ATT TCT CGT GGT TCA. All samples were assayed in triplicate, and relative gene expression was quantified using the 2-ΔΔCt method as previously described (Livak and Schmittgen, 2001).
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