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7 protocols using clarity max western ecl substrate kit

1

Quantitative Western Blot Analysis

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Western blot analysis was carried out as described earlier [13 (link)]. Briefly, 4T1-Qt cells were lysed using RIPA buffer, and the resulting lysate was precipitated (15 min, 14,000× g). Sample buffer 5× was added to different amounts of cell lysate, heated at 95 °C, then cooled on ice. Samples were loaded onto a gel and electrophoresed (80 V for 25 min and 100 V for 1.5 h); then, the gel was transferred into a transfer buffer. The nitrocellulose membrane was activated and placed over the gel. The transfer was carried out in a chamber filled with transfer buffer for 1 h at 100 V. Then, the membrane was washed three times to remove transfer buffer residues in PBST. To prevent nonspecific binding, the membrane was incubated in a PBST solution with 5% non-fat milk for 2 h and washed again. The membrane was incubated with anti-DYKDDDDK Tag antibodies (1:1000, BioLegend, San Diego, CA, USA) for 2 h, followed by washing three times. After that, alkaline horseradish peroxidase conjugated secondary antibodies (1:1000, goat anti-mouse IgG, Santa Cruz Biotechnology,) were added. Clarity Max Western ECL Substrate kit (BioRad, Hercules, CA, USA) was used to reveal the result. The results were registered with the ChemidocMP Imaging system (BioRad, Hercules, CA, USA).
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2

Western Blotting Workflow: PVDF Membrane Transfer

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Protein samples separated on SDS-PAGE gels were transferred to the polyvinylidene fluoride (PVDF) membrane. The semi-dry transfer was performed in Tris-glycine buffer with SDS and isopropanol using Biometra Flashblot (Analytik Jena GmbH). Parameters of the analysis were set to 15 V, 250 mA for 45 min. Subsequently, the PVDF membrane was incubated in specific antibody solution (mouse anti-His) (Invitrogen) with dilution of 1:1000 in a 1% skim milk solution at 4 °C overnight. Further, the membrane was washed in goat anti-mouse secondary antibody (1:10 000) in 1% skim milk solution (Goat Anti-Mouse IgG, Sigma Aldrich) for 1 h at room temperature. For signal visualisation, the membrane was washed in chemiluminescence solution using Clarity Max Western ECL Substrate kit (Bio-Rad) according to the protocol and signal was detected using ImageQuant LAS 500 chemiluminescence CCD camera (GE Healthcare).
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3

Western Blot for FLAG-Tagged Proteins

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The cells were lysed with RIPA buffer, and the lysates were centrifuged (15 min, 14,000× g). Buffer for probes (5×) was added to 2, 5, 10, and 20 µL of cell lysate, and the samples were heated to 95 °C for 5 min and then cooled down by placing on ice. The samples were put in the gel, and electrophoresis was run on 80 V for 25 min and 100 V for 90 min. PageRuler-prestained protein ladder (Thermo Fisher) served as a length marker. The gel was placed to transfer buffer (25 mM Tris buffer, 192 mM glycine, pH 8.3, 10% ethanol, 0.25% SDS). Nitrocellulose membrane activated with 96% ethanol was placed over the gel. The samples transfer was performed in a bath with transfer buffer on 100 V for 1 h. Afterward, the membrane was washed 3 times from residues of transfer buffer in PBS-0.1% Tween (PBST). To block unspecific protein binding, the membrane was incubated in PBST supplemented with 5% skimmed milk for 2 h, then washed again. The membrane was incubated with primary antibodies against FLAG-tag (Sigma-Aldrich, 1:1000) for 2 h and then washed 3 times. Secondary goat anti-mouse IgG antibodies (Santa Cruz Biotechnology, 1:1000) conjugated with alkaline horseradish peroxidase. Clarity Max Western ECL Substrate kit (BioRad) was used to reveal the result according to the manufacturer’s protocol. The result was registered with the ChemidocMP Imaging system (BioRad).
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4

Western Blot Analysis of Protein Expression

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After treated with compounds, cells or tumor tissues were harvested and lysed in protein lysate buffer followed by centrifugation (12,000 rpm, 10 min, 4°C), supernatants were collected. The protein concentrations were measured using the Quick Start™ Bradford Protein Assay Kit (#5000201, Bio-Rad, Hercules, CA). Equivalent amount of protein samples were separated by 12% SDS-polyacrylamide gel (SDS-PAGE) and then transferred to PVDF membrane. The blotting was blocked with 5% nonfat milk at room temperature for 2 h and then incubated with primary antibody at 4°C for overnight. At last, anti-rabbit HRP-conjugated secondary antibody was added and incubated with membrane for 1 h. Between every two steps, the membrane will be washed with TBST for three times. The immune-reactive bands were detected via Clarity Max Western ECL Substrate Kit (#1705062, Bio-Rad, Hercules, CA). The density of the immune-reactive bands was analyzed by Image J (National Institute of Health, MD).
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5

Western Blot Analysis of KSHV Proteins

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The expression of the proteins of interest was detected by Western Blot using protein-specific antibodies as described previously [44 (link)]. Immuno-reactive bands were identified using a Bio-rad Clarity Max Western ECL Substrate kit, and visualized by Bio-rad Chemi Doc Imaging System. Anti-LANA antibody was purchased from Advanced Biotechnologies Inc (Eldersburg, MD, USA). Antibodies for KSHV RTA and ORF54 were purchased from Helmholtz-Munich, Germany and anti-ORF62 antibody was purchased from Novus Biologicals (Centennial, CO, USA). Antibodies for c-Myc, H3K9Ac, H4K9Ac, cleaved Caspase3, cleaved PARP, p-Rb, p-ATM, acetyl-tubulin and p21 were obtained from Cell Signaling Technology (Danvers, MA, USA).
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6

Western Blotting Workflow: PVDF Membrane Transfer

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Protein samples separated on SDS-PAGE gels were transferred to the polyvinylidene fluoride (PVDF) membrane. The semi-dry transfer was performed in Tris-glycine buffer with SDS and isopropanol using Biometra Flashblot (Analytik Jena GmbH). Parameters of the analysis were set to 15 V, 250 mA for 45 min. Subsequently, the PVDF membrane was incubated in specific antibody solution (mouse anti-His) (Invitrogen) with dilution of 1:1000 in a 1% skim milk solution at 4 °C overnight. Further, the membrane was washed in goat anti-mouse secondary antibody (1:10 000) in 1% skim milk solution (Goat Anti-Mouse IgG, Sigma Aldrich) for 1 h at room temperature. For signal visualisation, the membrane was washed in chemiluminescence solution using Clarity Max Western ECL Substrate kit (Bio-Rad) according to the protocol and signal was detected using ImageQuant LAS 500 chemiluminescence CCD camera (GE Healthcare).
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7

Western Blot Analysis of HIF-1α

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The PVDF membranes were incubated with HIF-1α and β-actin primary antibodies, followed by horseradish peroxidase-conjugated secondary antisera (Table 1). The primary antibodies were diluted in a blocking solution and incubated overnight at +4°C. The membrane was then washed five times with PBS-T; secondary antibodies diluted in blocking solution were added for 1 h at room temperature and, and after five washes with PBS-T, they were ready to be analyzed.
The Clarity Max™ Western ECL Substrate kit (Bio-Rad, Hercules, California, USA) was used to visualize the chemiluminescence of our proteins of interest. The membrane was exposed to a photographic film that was further processed with commercially available developer and fixer solutions (Kodak). Images were obtained by scanning the developed film, and the abundance of proteins of each band was evaluated by densitometric analysis with the ImageJ-NIH image software. The effect of CoCl2 treatment on HIF-1α protein levels was expressed as the fold change variation of the optical density (OD), expressed in arbitrary units of HIF-1α signals, normalized to the respective loading control β-actin.
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