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3 protocols using ab37477

1

Chromatin Remodeling Complex Protein Detection

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Primary antibodies for Western blots used were rabbit anti-human SNF2H (Bethyl Laboratories, A301-081A), mouse anti-CTCF (Abcam, ab37477), rabbit anti-RAD21 (Abcam, ab992), rabbit anti-CHD1 (Bethyl Laboratories, A301-218A), rabbit anti-CHD2 (Active Motif, 39364), rabbit anti-CHD4 (Bethyl Laboratories, A301-081A), rabbit anti-ACF1 (Bethyl Laboratories, A301-318A), rabbit anti-WSTF (Cell Signaling, 2152), rabbit anti–TIP5 (Invitrogen, 491037) and mouse anti-beta actin (Sigma, A2228). Primary antibodies for ChIP used were rabbit anti-human SNF2H (Abcam, ab72499), mouse anti-CTCF (Millipore, 17–10044), rabbit anti-RAD21 (Abcam, ab992), rabbit anti-BPTF (Millipore, Abe24), and rat anti-SNF2L (2C4, [39 (link)] which has been kindly provided by P. Becker). Secondary antibodies for Western blots used were Alexa Fluor 680 goat anti-mouse (Invitrogen) and Alexa Fluor 790 goat anti-rabbit (Invitrogen) for immunofluorescence staining and analysis using the LI-COR Odyssey CLx.
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2

Chromatin Immunoprecipitation Assay for Transcription Factors

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Antibodies against CHD4 (ab70469; Abcam [UK] and in-house generated), CTCF (ab37477; Abcam), α-tubulin (2144S; Cell Signaling Technology, USA), V5 (R960-25; Thermo Fisher Scientific), mCherry2 (M11217; Invitrogen), β-actin (SC-47778; Santa Cruz Biotechnology), and FLAG (F7425; Sigma) were used for immunoblotting. Antibodies against CHD4 (ab70469; Abcam and in-house generated) and IgG (12-371; Millipore) were used for immunoprecipitation. Antibodies against CTCF (07-729; Millipore), RAD21 (ab992; Abcam), H3 (ab1791; Abcam), H3K9me3 (ab8898; Abcam), H3K4me1 (in-house generated), H3K4me3 (in-house generated), H3K27ac (ab4729; Abcam), and H3K27me3 (07-449; Millipore) were used for ChIP-seq. Antibodies against CHD4 (ab70469; Abcam and in-house generated), RAD21 (ab992; Abcam), and IgG (12-371; Millipore and in-house generated) were used for CUT&RUN.
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3

ChIP-seq and Immunoblotting Protocol

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Antibodies against Chd4 (ab70469, Abcam), CTCF (ab37477, Abcam), and β-actin (SC-47778, Santa Cruz Biotech) were used for immunoblotting. Antibodies against Chd4 (ab70469, Abcam and inhouse generated) and IgG (12-371, Millipore) were used for immunoprecipitation. Antibodies against CTCF (07-729, Millipore), H3 (ab1791, Abcam), H3K9me3 (ab8898, Abcam), H3K4me1 (in-house generated), H3K4me3 (in-house generated), H3K27ac (ab4729, Abcam), and H3K27me3 (07-449, Millipore) were used for ChIP-seq.
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