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14 protocols using murine recombinant epidermal growth factor

1

Isolation and Expansion of Adult Neural Stem Cells

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Adult NSPCs were obtained from the subventricular zone of eight-week-old male C57BL/6J mice. The entire subventricular zone was dissected, and the lateral wall of the lateral ventricles was carefully removed from the surrounding brain tissue and collected in phosphate-buffered saline (PBS; BOSTER, Wuhan, China). These tissues were chopped into 1-mm cubes and digested in 0.125% trypsin (Gibco) for 5 min, then the digestion was stopped with soybean trypsin inhibitor. Cells were resuspended in complete DMEM/F12 medium (Gibco) containing 20 ng/ml recombinant murine fibroblast growth factor (FGF; PeproTech, NJ, USA), 20 ng/ml recombinant murine epidermal growth factor (EGF; PeproTech), 1% N-2 supplement (Gibco), and 2% B-27 supplement (Gibco). After culture for 7 days, neurospheres were isolated by centrifugation (600 g for 3 min), enzymatically dissociated into a single-cell suspension using 0.125% pancreatin (Sigma-Aldrich), and plated at a density of 5 × 104 cells/cm2 in proliferation medium. To permit serial cell passaging, this pancreatin dissociation process was repeated every 3–4 days.
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2

Isolation and Characterization of Murine Mesenchymal Stem Cells

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Materials used in this study were listed as follows: Dulbecco's modified eagle medium (DMEM)-low glucose (HyClone, Logan, UT, USA); DMEM/F12 culture medium (HyClone); B27 supplement without vitamin A (Gibco, New York, NY, USA); recombinant murine epidermal growth factor (EGF) (PeproTech, Rocky Hill, NJ, USA); recombinant murine fibroblast growth factor (FGF)-basic (PeproTech); 0.5% Oil Red O solution (Solarbio, Beijing, China); Masson Stain Kit (Nanjing Jiancheng Technology Co., Ltd., Nanjing, Jiangsu, China); cell proliferation assay kit (KeyGen Biotech Co., Ltd., Nanjing, Jiangsu, China); mouse osteogenesis induction and differentiation base media and mouse adipogenesis induction and differentiation base media (Cyagen Biosciences Co., Ltd., Guangzhou, Guangdong, China); anti-mouse Ly-6A/E (stem cell antigen-1, Sca-1) phycoerythrin (PE), anti-mouse CD34 fluorescein isothiocyanate (FITC), anti-mouse CD31 (platelet endothelial cell adhesion molecule-1, PECAM-1) FITC, anti-human/mouse CD44 PE (eBioscience, San Diego, CA, USA); anti-nestin antibody, goat anti-mouse immunoglobulin G (IgG)-FITC (Santa Cruz Biotechnology, Inc., Santa Cruz, CA, USA); goat anti-mouse IgG (H+L)-horseradish peroxidase (HRP) (Jackson ImmunoResearch, West Grove, PA, USA); and Alizarin Red S solution (Solarbio, Beijing, China).
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3

Serum-Free Culture of LLCs

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LLCs were seeded at 300 cells per well in six-well ultralow cluster plates (Corning, 07-200-601) and cultured for 7 days in DMEM/F12 serum-free medium (Gibco, 11320033) supplemented with 20 ng/ml recombinant murine epidermal growth factor (EGF) (PeproTech, 315-09), 10 ng/ml recombinant murine basic fibroblast growth factor (bFGF) (PeproTech, 450-33), 5 μg/ml insulin (Sigma), and 0.4% bovine serum albumin (Sigma).
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4

Generation of Human Intestinal Organoids

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Human intestinal organoids were generated following previously established protocols (Spence et al, 2011 (link)) using multiple pluripotent stem cell (PSC) lines (Table EV2). Briefly, PSCs were differentiated through the definitive endoderm stage via the addition of Activin A (Cell Guidance Systems) between day‐0 (D0) and D2, BMP4 (R&D Systems) at D1 and CHIR99021 (Stemgent)/FGF4 (R&D Systems) from D3 to D6. The addition of CHIR99021/FGF4 prompted the formation of midgut tube spheroids from the definitive endoderm monolayer. At D7 midgut tube spheroids were collected and suspended in a Matrigel dome (Corning). Spheroids were then grown in gut media: DMEM/F12 (Gibco) supplemented with N‐2 (Gibco), B‐27 (Gibco), HEPES solution (Millipore‐Sigma), recombinant murine epidermal growth factor (Peprotech), L‐Glutamine (Gibco), Penicillin/Streptomycin (Gibco). At D21, sample density was reduced to ≈1–3 per 50 µl Matrigel bubble. Samples were grown for an additional 14 days in gut media, resulting in terminal HIO cultures (Spence et al, 2011 (link)). Individual HIOs were considered as biological replicates for all experiments. All experimentation using human tissues described herein was approved by an IRB at CCHMC (IRB#2014‐0427). Informed consent for tissue collection, storage, and use of the samples was obtained from the donors at CCHMC.
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5

Isolation and Encapsulation of Murine Primordial Ovarian Cells

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According to Hassanpour et al.’s protocol[11 (link)], POCs were prepared from 4-week-old female Kunming mice and then encapsulated in the bioink. Briefly, each mouse was intraperitoneally injected with 10 IU Pregnant Mare Serum Gonadotropin (PMSG, Solarbio) followed by 16 U Chorionic Gonadotrophin for Injection (Harbin Sanma Animal Pharmaceutical Co. LTD) after 48 h, and then, the ovaries were isolated after 6 h. The ovaries were incubated in α-MEM medium (Gibco) with 1% penicillin-streptomycin (PS, Millipore) at 4°C. Afterward, the ovaries were, manually, dissected with fine needles into smaller fragments and incubated in a digestion solution consisting of Dispase II (Cat. No. D4693-1G, Sigma) and Collagenase I (Cat. No. 1904MG100, BioFROXX) at 37°C for 30 min. Then, the enzymatic process was terminated by equal volumes of α-MEM medium containing 10% FBS (BI). The suspension was filtered through a 100 μm cell strainer (Life Sciences, USA) and washed twice with the following culture medium: α-MEM medium with 10% FBS, 3 ng/ml Recombinant Murine Epidermal Growth Factor (Cat. no. 315-09, Pepro Tech), 100 mIU/ml Follicle Stimulating Hormone for Injection (Harbin Sanma Animal Pharmaceutical Co. LTD), and 1.5 U/ml chorionic gonadotrophin for injection and 1% PS. Cells were resuspended in 200 ml culture medium after centrifugation and then mixed well with the bioink for printing.
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6

Murine and Human Colonic Crypt Culture

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Advanced DMEM/F12, Glutamax and B27 and N2 were purchased from InVitrogen. Mouse colonic crypt culture; murine recombinant epidermal growth factor and noggin from Peprotech, mouse recombinant R-spondin 1 from R & D Systems. Human recombinant growth factors used for human colonic crypt culture experiments were: insulin growth factor-1 (Sigma); R-spondin 1 (Sino Biological or R&D Systems); Wnt 3A (R&D systems); noggin (Peprotech). Growth factor-reduced Matrigel was purchased from VWR International.
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7

Intestinal Organoid Derivation and Culturing

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Organoids were prepared using published protocols.42 (link) Briefly, fragments of small intestine were transferred into crypt isolation buffer (2 mM ethylenediaminetetraacetic acid in PBS) under gentle agitation at 4 °C for 30 min. The released crypts were resuspended in Matrigel (BD) (300–500 crypts per 50 ml) and cultured in advanced Dulbecco's modified Eagle's medium/F12+GlutaMAX (Life Technologies) supplemented with 10 mM HEPES (Sigma-Aldrich), 1% penicillin/streptomycin (Sigma-Aldrich), 1% N2 supplement (Life Technologies), 2% B27 supplement (Life Technologies), murine recombinant epidermal growth factor (50 ng ml−1), murine recombinant Noggin (100 ng ml−1) (PeproTech EC, London, UK) and human recombinant R-spondin1 (1 μg ml−1) (R&D Systems). Well-differentiated crypt organoids were split into 30 organoids per 50 μl Matrigel/well and used for subsequent experiments.
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8

Rutaecarpine Isolation and Characterization

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Rutaecarpine (RUT) was isolated with a purity > 98% and the structure determined with nuclear magnetic resonance and high-resolution mass spectrometry as described previously [20 (link)]. Dextran sulfate sodium salt (DSS, 36,000–50,000 Da) was purchased from MP Biomedicals (Irving, CA). Cell Counting Kit-8 was obtained from Dojindo Molecular Technologies (Rockville, MD). Corn oil, dimethyl sulfoxide (DMSO), Y27632, DL-dithiothreitol, and ethylene diamine tetraacetic acid were purchased from Sigma (St. Louis, MO). Murine recombinant epidermal growth factor and noggin were obtained from Peprotech (Rocky Hill, NJ). Human recombinant R-spondin 1 was purchased from Nuvelo (San Carlos, CA). Fetal bovine serum (FBS), Dulbecco’s modified Eagle’s medium (DMEM) and sodium pyruvate were obtained from Gibco-BRL (Grand Island, NY). Penicillin and streptomycin were obtained from Invitrogen (Carlsbad, CA). TRIzol reagent and lipofectamine 3000 reagent were purchased from Thermo Fisher Scientific (Pittsburgh, PA). Anti-NRF2 (Ab76026), anti-ACTB (Ab8227), and anti-LMNB1 (Ab133741) antibodies were purchased from Abcam (Cambridge, UK). qScriptTM cDNA SuperMix was from Quantabio (Beverly, MA). Sulforaphane (SFN) was obtained from Solarbio (Beijing, China). Recombinant human KEAP1 protein (Cat#, Ag0779) was from Proteintech Group (Chicago, IL).
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9

Intestinal Organoid Isolation and Culture

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The protocols of mouse intestinal organoid, cell isolation, and culture were modified from previously described methods21 ,56 (link). In brief, the intestines were harvested, opened longitudinally, and cut into small pieces of 2 mm in size. The tissues were soaked in dissociation reagent and gently shaken at room temperature for 15 min, followed by filtering through a 70 μm sterile cell strainer. The crypts were then collected by centrifugation of the fluid mixture at 140 × g for 5 min at 4 °C. An aliquots of 500 crypts was resuspended with 50 μl growth factor reduced phenol-free Matrigel (BD Biosciences, San Jose, CA, USA), reseeded, and polymerised in the centre well of a 24-well plate. The crypts were cultured in Dulbecco’s modified Eagle’s medium/F12 supplemented with penicillin/streptomycin, 50 ng/ml murine recombinant epidermal growth factor (Peprotech, Hamburg, Germany), Noggin (5% final volume), and R-spondin 1 (5% final volume). Medium change was performed every 3–4 days. The experiment was repeated twice, each condition with triplicate samples, and each sample contained multiple (>15) organoids.
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10

Intestinal Organoid Culture and Immunostaining

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Crypt culture media and supplements; Advanced DMEM/F12, Glutamax and B27 and N2 were purchased from InVitrogen. Murine recombinant epidermal growth factor, noggin and IL-6, IL-22 were all obtained from Peprotech and mouse recombinant R-spondin 1 from R & D Systems. Growth factor-reduced Matrigel was purchased from VWR International.
Immunolabelling; primary and secondary antibodies; rat anti-BrdU (Abcam), mouse anti-Lysozyme (Abcam); goat anti-E-cadherin (R&D); rabbit IgG, rabbit anti IL6 receptor and anti-IL-6 (Bio-Xcell), rabbit anti-pSTAT3 Tyr705, pSTAT3 Y705 blocking peptide, rabbit anti-Cleaved caspase-3 (Cell Signaling); Immunolabelling was visualised by using an appropriate combination of species-specific Alexafluor-conjugated secondary antibodies (488, 568, and 647 nm), raised in mouse, donkey or goat (Invitrogen). FITC-conjugated Ulex europaeus Lectin (UEA-1 FITC) was purchased from Sigma. Vectashield mounting medium with DAPI was purchased from Vector Laboratories Ltd. STATTIC and IWP2 were purchased from Tocris Bioscience.
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