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6 protocols using p nitrophenyl β d cellobioside

1

Enzymes Activity Quantification in Supernatants

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Total extracellular protein content in supernatants was measured using a Bio-Rad DC protein assay kit (Bio-Rad) based on absorbance at 595 nm, with bovine serum albumin used as the standard. FPA was measured by the 3,5-dinitrosalicylic acid method [62 (link)]. Exoglucanase activity was measured at 50°C using 1.0 mg/mL p-nitrophenyl-β-d-cellobioside (Sigma-Aldrich) in 50 mM citrate buffer (pH 4.8) as the substrate. The reaction mixture containing 250 µL of properly diluted enzyme and 250 µL of 1.0 mg/mL substrate in 50 mM citrate buffer (pH 4.8) was incubated for 10 min at 50°C, and the reaction was terminated by the addition of 500 µL of 1 M Na2CO3. The release of p-nitrophenol (pNP) was monitored at an absorbance at 420 nm. The control was the inactivated enzyme, which was boiled at 100°C for 10 min. pNP was used to generate a standard curve. In exoglucanase activity analyses, one unit of enzymatic activity was defined as the amount of pNP released from the substrate per minute using 1 mL enzyme under the standard assay conditions. Endoglucanase activity in culture supernatants was determined using an azo-cm-cellulose assay kit (Megazyme, Wicklow, Ireland) as described by the manufacturer. Endo-1,4-β-xylanase activities were assayed using an azo-xylan kit (Megazyme) according to the manufacturer’s instructions.
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2

Agro-residue Enzyme Production Protocols

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Wheat bran used for enzyme production was procured from a local market; wheat straw and rice straw were procured from local farmer whereas sugarcane bagasse was procured from sugar industry. All the agro residues were washed thoroughly with water, dried at 80°C and stored at room temperature in airtight plastic bags until use. p-Nitrophenyl-α-L-arabinofuranoside (PNAF), p-nitrophenyl-β-D-xylopyranoside (PNXP), p-nitrophenyl-β-D-glucopyranoside (PNGP), p-nitrophenyl-β-D-cellobioside (PNCB), carboxymethyl-cellulose (CMC), Avicel PH-101, birch wood xylan and cellobiose were purchased from Sigma (St. Louis, MO, USA). Commercial cellulase SIGMA (Cellulases from T. reseei ATCC 26,921, ≥700 U/g) was purchased from Sigma-Aldrich, USA. All the chemicals, reagents and media used in the present study were of analytical grade purchased from Qualigens, Hi-media, Merck, Loba from India.
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3

Laccase Production from Orange Waste

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Orange waste used for laccase production was donated by a local restaurant and subsequently dried and milled. Cellic CTec2 enzymatic cocktail and commercial laccase (Novozymes NS-22127) were kindly donated by Novozymes® (Bagsvaerd, Denmark). The chromatography columns Hiprep Q FF and Superdex 75 10/300 GL were acquired from GE Healthcare Life Science (Chicago, IL, USA). Aminex HPX-87P column and Precision Plus Protein TM Standards were purchased from Bio-Rad Laboratories (Hercules, CA, USA). Malt Extract Agar, Vanillin, 3,5-dinitrosalicylic acid (DNS), sodium carbonate, and the substrates for enzymatic activities, 3-ethylbenzothiazoline-6-sulphonic acid (ABTS), 2,6-dimethoxyphenol (DMP), xylan beechwood, carboxymethylcellulose (CMC), locust bean, debranched arabinan, β-glucan, p-nitrophenyl-α-L-arabinofuranoside, p-nitrophenyl-β-d-galactopyranoside, p-nitrophenyl-β-d-glycopyranoside, p-nitrophenyl-β-D-xylanopyranoside, and p-nitrophenyl-β-d-cellobioside, were purchased from Sigma-Aldrich (St. Louis, MO, USA). All reagents used for the assays were of analytical grade.
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4

Glycoside Hydrolysis Assay Standards

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p-Nitrophenol (pNP), p-nitrophenyl- α-D-glucopyranoside (pNPαG), p-nitrophenyl- β-D-glucopyranoside (pNPβG), p-nitrophenyl-β-D-cellobioside (pNPβC), p-nitrophenyl- α-L-rhamnopyranoside (pNPαR), p-nitrophenyl- β-D-xylopyranoside (pNPβX), p-nitrophenyl-β-D-galactopyranoside (pNPβGal), o-nitropheyl-β-D-galactopyranoside (o NPβGal), 4-methylumbelliferyl- β-D-glucopyranoside (MUβG), isoflavone glycoside standards (genistin and daidzin), isoflavone aglycone standards (genistein and daidzein), arbutin, avicel, esculin, ammonium iron (III) citrate, cellobiose, maltose, lactose, sucrose, and xylan were obtained from Sigma (St. Louis, MO, USA). All the different chemicals and reagents were used at analytical grade.
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5

Enzymatic Activities Assay Protocol

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BGL, CBH and BXL activities were assayed by the method described by Herr et al. (1978) , using 500 μM p-nitrophenyl-β-D-glucopyranoside, p-nitrophenyl-β-Dcellobioside or p-nitrophenyl-β-D-xylopyranoside (SIGMA, MO, USA) respectively. One unit (U) of enzyme activity was defined as the amount of enzyme necessary to release 1 μmol of p-nitrophenol per minute.
EX and EG activities were quantified according to Miller (1959) using beechwood xylan (SIGMA, MO, USA) or carboxymethyl cellulose (CMC) respectively. One IU was defined as the amount of enzyme that released 1 µmol of product per minute under the assay conditions.
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6

Enzymatic Assays for Glycosidic Substrates

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Glucose, cellobiose, xylobiose, p-nitrophenyl-β-D-glucopyranoside (pNPG), p-nitrophenyl-β-D-cellobioside (pNPC), p-nitrophenyl-β-D-xylopyranoside (pNPX), 4-methylumbelliferyl-β-D-glucopyranoside (MUG), carboxymethyl-cellulose (CMC), barley β-glucan, birchwood xylan, dinitrosalicylic acid (DNS), trypan blue, and other chemicals were purchased from Sigma-Aldrich (USA). Acacetin and tilianin (acacetin 7-glucoside) were isolated from Agastache rugosa, and MAO inhibition was assayed using recombinant human MAO-A, as described previously [21] .
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