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4 protocols using gel pro analyzer software

1

Western Blot Analysis of eNOS Phosphorylation

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Samples of aorta tissue were washed three times with cold PBS before being lysed in RIPA lysis buffer (10 mmol/L Tris-HCl, pH 7.5; 1% NP-40; 0.1% sodium deoxycholate; 0.1% SDS; 150 mmol/L NaCl; and 1 mmol/L EDTA) supplemented with 1× protease and phosphatase inhibitor cocktail (Thermo, Fremont, CA, USA) on ice. The separated proteins were transferred onto a nitrocellulose membrane. The anti-eNOS (1:100), anti-phospho-eNOS (1:100, Ser1177) and anti-β-actin (1:3000) antibodies and secondary antibodies (1:10000) were obtained from Cell Signaling Technology (Beverly, MA, USA). Immunoreactive protein bands were visualized using a ChemiDoc XRS+ System (Bio-Rad) and quantified with Gel Pro Analyzer software (Silk Scientific, Inc., Orem, UT, USA). The internal control, β-actin, was used to normalize differences due to loading variations.
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2

Protein Expression Analysis in Liver Tissue

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Samples of liver tissue were washed three times with cold phosphate-buffered saline (PBS) before being lysed in radioimmunoprecipitation (RIPA) lysis buffer (10 mmol/L Tris-HCl, pH 7.5, 1% NP-40; 0.1% sodium deoxycholate, 0.1% SDS, 150 mmol/L NaCl, and 1 mmol/L EDTA) supplemented with 1× protease and phosphatase inhibitor cocktail (Thermo, Fremont, CA, USA) on ice. The separated proteins were transferred onto a nitrocellulose membrane. The monoclonal anti-AMPK (1:100), anti-phospho-AMPK (1:200, Thr172), anti-HMGCR (1:100), anti-phospho-HMGCR (1:100, Ser872), anti-SREBP-2 (1:100), INSIG-1 (1:100), and anti-β-actin (1:3000) antibodies and secondary antibodies (1:10,000) were obtained from Abcam (Cambridge, MA, USA). Immunoreactivity protein bands were visualized using a ChemiDoc XRS+ System (Bio-Rad), and quantified with Gel Pro Analyzer software (Silk Scientific, Inc., Orem, UT, USA). The internal control, β-actin, was used to normalize differences due to loading variations.
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3

Adipose Tissue Protein Analysis

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Samples of epididymal or inguinal white adipose tissues were washed three times with cold PBS before being lysed in radioimmunoprecipitation (RIPA) lysis buffer (10 mmol/L Tris-HCl, pH 7.5, 1% NP-40; 0.1% sodium deoxycholate, 0.2% SDS, 150 mmol/L NaCl, and 1 mmol/L EDTA) supplemented with 1× protease and phosphatase inhibitor cocktail (Thermo, Fremont, CA, USA) on ice. The separated proteins were transferred onto a nitrocellulose membrane. The anti-ATGL (1:100, #2138), anti-HSL (1:200, #4107), anti-p-HSL (1:200. Ser563, #4139), anti-perilipin-1 (1:100, #3467), anti-UCP1 (1:100, #14670), anti-CPT1 (1:100), PGC1α (1:100, #4259), and anti-β-actin (1:3000, #4967) antibodies were obtained from Cell Signaling Technology (Danvers, MA, USA). The monoclonal anti-PPARα antibody (1:200, ab191226) and secondary antibodies (1:10,000) were obtained from Abcam (Cambridge, MA, USA). Immunoreactive protein bands were visualized using a ChemiDoc XRS+ System (Bio-Rad) and quantified with Gel Pro Analyzer software (Silk Scientific, Inc., Orem, UT, USA). The internal control, β-actin, was used to normalize differences due to loading variations.
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4

Protein Expression Analysis of Stomach Samples

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Stomach samples were washed three times with cold PBS before being lysed in radioimmunoprecipitation (RIPA) lysis buffer (10 mmol/L Tris-HCl, pH 7.5, 1% NP-40; .1% sodium deoxycholate, .2% SDS, 150 mmol/L NaCl, and 1 mmol/L EDTA) supplemented with 1× protease inhibitor cocktail (Thermo, Fremont, CA, USA) on ice. The separated proteins were transferred onto a nitrocellulose membrane. Anti-NF-κB/p65 (1:1000, #8242) and anti-COX-2 (1:1000, #12282) antibodies were obtained from Cell Signaling Technology (Danvers, MA, USA). The monoclonal anti-iNOS antibody (1:1000, ab136918), anti-TNF-α antibody (1:500, ab6671), and the secondary antibodies (1:10,000) were obtained from Abcam (Cambridge, MA, USA). Immunoreactive protein bands were visualized using a ChemiDoc XRS+ System (BioRad) and quantified with Gel Pro Analyzer software (Silk Scientific, Inc., Orem, UT, USA). The internal control, β-actin (1:2000, #sc-47778, Santa Cruz Biotechnology, Inc., Dallas, Texas, USA), was used to normalize differences due to loading variations.
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