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25 protocols using neurocult ns a basal medium

1

Culturing Patient-Derived Medulloblastoma Cell Lines

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Patient-derived MB lines were obtained from Dr Xiao-Nan Li, Baylor College of Medicine, Texas Children Cancer Centre, USA (Shu et al., 2008 (link), Zhao et al., 2012 (link)). ICb1299 was cultured in DMEM (high glucose, GlutaMAX, Thermo Fisher Scientific) supplemented with 10% fetal bovine serum and 1% penicillin-streptomycin. ICb1595, ICb984, and ICb1338 were cultured in NeuroCult NS-A Basal Medium (human) (STEMCELL Technologies) supplemented with NeuroCult Proliferation Supplement (human) (STEMCELL Technologies), 1% penicillin-streptomycin, 2 μg/mL heparin (STEMCELL Technologies), 20 ng/mL epidermal growth factor (EGF) (recombinant mouse, PeproTech), and 10 ng/mL basic fibroblast growth factor (bFGF) (human recombinant, PeproTech). ICb1595, ICb984, and ICb1338 were cultured on plates coated with Poly-L-ornithine and Laminin (Sigma). CHLA-01-Med was purchased from ATCC (CRL3021) and grown in DMEM-F12 (Gibco) supplemented with B27 (Gibco), 20 ng/mL EGF, and 10 ng/mL bFGF. Cells were maintained at 37°C and were sub-cultured every 3 days once they reached confluence.
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2

Culturing Neural and Glioma Stem Cells

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The U5 fetal human NSC line (Bressan et al, 2017) and adult 0131‐mesenchymal and 0827‐proneural human GSC lines (Son et al, 2009) were grown in NeuroCult NS‐A basal medium (StemCell Technologies) supplemented with B27 (Thermo Fisher), N2 (2× stock in Advanced DMEM/F‐12 (Fisher) with 25 μg/ml insulin (Sigma), 100 μg/ml apo‐Transferrin (Sigma), 6 ng/ml progesterone (Sigma), 16 μg/ml putrescine (Sigma), 30 nM sodium selenite (Sigma), and 50 μg/ml bovine serum albumin (Sigma), and EGF and FGF‐2 (20 ng/ml each) (Peprotech) on laminin (Sigma or Trevigen)‐coated polystyrene plates and passaged according to previously published protocols (Pollard et al, 2009). Cells were detached from their plates using Accutase (Thermo Fisher). 293T (ATCC) cells were grown in 10% FBS/DMEM (Invitrogen).
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3

Culturing and Characterizing Glioblastoma Cells

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All fully established cancer lines were cultured at 37°C (5% (v/v CO2) in vitro using RPMI supplemented with 10% (v/v) fetal calf serum and 10% (v/v) non‐essential amino acids. All primary human GBM cells were cultured at 37°C (5% (v/v) CO2) in vitro using RPMI supplemented with 2% (v/v) fetal calf serum and 10% (v/v) non‐essential amino acids at 37°C (5% (v/v CO2). GBM5/6/12/14 stem cells were cultured in StemCell Technologies NeuroCult NS‐A Basal Medium supplemented with 20 μg/ml bFGF, 20 μg/ml epidermal growth factor (EGF), and 2 mM heparin. CD133+ glioma cells from this population were isolated by fluorescence‐activated cell sorting analysis. Cells, for example, GBM12, grew as neurospheres and were characterized for multiple stem cell markers, including CD44, SOX2, CD133, CD15, CD36, Integrin B6, and MAP2. Neurosphere GBM cells had an approximate 10‐fold greater tumorigenicity in vivo than parental wild type (WT) GBM cells (data not shown). For short‐term cell killing assays and immunoblotting, cells were plated at a density of 3 × 103 per cm2 and 24 h after plating were treated with various drugs, as indicated. In vitro small molecule inhibitor treatments were from a 100 mM stock solution of each drug and the maximal concentration of vehicle (DMSO) in media was 0.02% (v/v). Cells were not cultured in growth factor free media during any study.
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4

Culture and Characterization of GBM Cells

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All fully established cancer lines were cultured at 37°C (5% (v/v CO2) in vitro using RPMI supplemented with 10% (v/v) fetal calf serum and 10% (v/v) non-essential amino acids. All primary human GBM cells were cultured at 37°C (5% (v/v) CO2) in vitro using RPMI supplemented with 2% (v/v) fetal calf serum and 10% (v/v) non-essential amino acids at 37°C (5% (v/v CO2). GBM5/6/12/14 stem cells were cultured in StemCell Technologies NeuroCult NS-A Basal Medium supplemented with 20 μg/ml bFGF, 20 μg/ml epidermal growth factor (EGF), and 2 mM heparin. CD133+ glioma cells from this population were isolated by fluorescence-activated cell sorting analysis. Cells, for example, GBM12, grew as neurospheres and were characterized for multiple stem cell markers, including CD44, SOX2, CD133, CD15, CD36, Integrin B6, and MAP2. Neurosphere GBM cells had an approximate 10-fold greater tumorigenicity in vivo than parental wild type (WT) GBM cells (data not shown). For short-term cell killing assays and immunoblotting, cells were plated at a density of 3 × 103 per cm2 and 24 h after plating were treated with various drugs, as indicated. In vitro small molecule inhibitor treatments were from a 100 mM stock solution of each drug and the maximal concentration of vehicle (DMSO) in media was 0.02% (v/v). Cells were not cultured in growth factor free media during any study.
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5

Glioblastoma Brain Tumor Initiating Cells

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Human BTIC lines were generated from resected specimens of patients with GBM as described previously (22 (link)). We grew cells in a 5% CO2 incubator and in a serum-free NeuroCult NS-A basal medium (STEMCELL Technologies) supplemented with NeuroCult™ Proliferation Supplement (STEMCELL Technologies), EGF (PeproTech Inc.), FGF (R&D Systems), and heparin solution (STEMCELL Technologies); we refer to this as BTIC medium. To propagate the cells, BTIC spheres were dissociated mechanically and plated into T-75 culture flasks. These lines were cultured chronologically, maintained, and authenticated within the University of Calgary BTIC Core. Human and mouse fetal neural stem cells were generated and cultured as previously described (56 (link), 57 (link)). Human brain tissues were obtained from 12- to 18-week-old fetuses from therapeutic abortions according to ethical guidelines established by the University of Calgary. The use of these human samples is approved by the Institutional Review Board of the University of Calgary, and consent was obtained from all donors of tissues.
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Glioblastoma and Brain Tumor Cell Lines

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Human glioblastoma cell lines, U87 (ATCC HTB-14), mouse glioma cell lines, GL261(ATCC), rodent glioma cell lines, F98 (obtained from R. Barth laboratory, Ohio State University, Columbus, OH, USA), 9L gliosarcoma (obtained from the Brain Tumor Research Center, UCSF, CA, USA) were used and routinely maintained in Dulbecco’s Modified Eagle Medium (Lonza, Portsmouth, NH, USA) supplemented with 10% fetal calf serum (Lonza) at 37 C° in 5% CO2-humidified incubators and were subcultured once or twice a week. Human primary brain tumor stem cell neurosphere lines, GB1A(0913) and primary brain tumor stem cell lines (BTSCs) JHH 1113, respectively derived by Vescovi and colleagues or generated within the department of Neurosurgery of the Johns Hopkins University (JHU, Baltimore, MD, USA)63 (link),64 (link) within compliance of JHU regulations, were grown in NeuroCult NS-A basal medium containing NeuroCult NS-A proliferation supplements (Stem Cell Technologies), 20ng/mL epidermal growth factor (PeproTech, Rocky Hill, NJ, USA), 10ng/mL basic fibroblast growth factor (PeproTech), and 4 μg/mL heparin (StemCell Technologies, Vancouver, Canada).
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7

Tumorsphere formation assay with inhibitors

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U87MG and LN229 cells were pretreated with or without acalabrutinib, rapamycin, or both. They were then seeded at a density of 800 cells/mL of tumorsphere-formation medium in ultralow attachment 12-well plates for 12 days. The medium comprised HEScGRO serum-free medium (Chemicon, Cat. SCM020) with 20 ng/mL of hEGF (NeuroCult NS-A basal medium) and 10 ng/mL of hFGF-b (STEMCELL Technologies, Vancouver, Canada; Cat. 5751). The formed tumorspheres (spherical, nonadherent cell masses with a diameter > 90 μm) were photographed and counted under an inverted phase contrast microscope.
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8

Glioma Neural Stem Cell Culture Protocol

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Patient-derived glioma neural stem cells (GNS 411) were a gift from the laboratory of P. Dirks, with Research Ethics Board approval at the Hospital for Sick Children, Toronto and the University of Toronto. The characterization of these cells as GSC-enriched cultures is presented in several publications by Park et al. and Dolma et al. (45 (link), 46 (link)). These cells are referred to as GSCs throughout the manuscript. Cells were maintained in an incubator (37°C, 5% CO2, and 95% humidity) grown in Corning Primaria flasks (Corning, 353808) coated with poly-l-ornithine (PLO; Sigma-Aldrich, P4957) and laminin (Sigma-Aldrich, 11243217001). GSC growth media contained serum-free NeuroCult NS-A Basal Medium (STEMCELL Technologies, 05750) supplemented with N2, B27, EGF, fibroblast growth factor, and heparin as previously described for neural stem cells (47 (link)).
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9

Culture of Neural Stem Cells

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Isolates were cultured in NeuroCult NS-A basal medium (StemCell Technologies) supplemented with B27 (Thermo Fisher Scientific), N2 (homemade 2x stock in Advanced DMEM/F-12 (Thermo Fisher Scientific)), EGF and FGF-2 (20 ng/ml) (PeproTech), glutamax (Thermo Fisher Scientific), and antibiotic-antimycotic (Thermo Fisher Scientific). Cells were cultured on laminin (Trevigen or in-house-purified)-coated polystyrene plates and passaged as previously described [77 (link)], using Accutase (EMD Millipore) to detach cells.
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10

Isolation and Culture of Primary Astrocytes and Glioma Cell Lines

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Primary astrocytes were obtained from GFAP-Cre mice pups 10 days after birth and maintained in Dulbecco’s modified Eagle’s medium (DMEM) containing 10% fetal bovine serum (FBS). Primary astrocytes were transduced at early passage. 005 and NF5310 cells were maintained in N2-supplemented (Invitrogen) DMEM/Ham’s F12 (Omega Scientific) containing fibroblast growth factor-2 (20 ng/ml), epidermal growth factor (20 ng/ml; Promega), and heparin (50 μg/ml; Sigma). SK892, SK429, and SK748 patient-derived cell lines were provided by S. Kesari (University California, San Diego) and maintained in NeuroCult NS-A Basal Medium (StemCell Technologies) supplemented with NeuroCult NS-A Proliferation Supplement, recombinant human epidermal growth factor (20 ng/ml), recombinant human basic fibroblast growth factor (10 ng/ml), and heparin (2 μg/ml). U87 glioma cells were maintained in DMEM containing 10% FBS.
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