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7 protocols using fumagillin

1

Enrichment and Characterization of Hepatoma Cancer Stem Cells

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Hepatoma cell lines; including Huh-7 and SK-HEP-1, were bought from American Type Culture Collection (ATCC, Manassas, VA, USA). Cells were maintained in RPMI1640 supplemented with fetal bovine serum (FBS, Lonza, Basel, Switzerland), 100 μg/mL streptomycin and 100 units/mL penicillin at 37°C in a humidified, 5% (v/v) CO2 atmosphere. Cells were passaged every three days.
To enrich CSCs, cells were cultured in DMEM/F12 medium without FBS, and supplemented with 100 μg/mL streptomycin and 100 units/mL penicillin, 20 ng/ml human recombinant epidermal growth factor (EGF), 20 ng/ml human recombinant basic fibroblast growth factor (bFGF), and 2% B27 supplement (Invitrogen, USA) and seeded in 6-well cell culture plate with ultra-low attachment surface (BioFLOAT, USA). Medium was half-refreshed every three days.
To evaluate the effects of Fumagillin on cell viability, 1, 2.5, 5, 7.5 and 10 μmol/L of Fumagillin, bought from Sigma-Aldrich (USA) in stock at final concentration of 20 mmol/L, was added for 24-hour incubation. To evaluate the effects of Fumagillin on sphere formation, Fumagillin was added for 24–96 h. To evaluate the effects of Fumagillin in maintenance of stemness, Fumagillin was added into spheres.
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2

Culturing Chlamydomonas reinhardtii for Experiments

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The C. reinhardtii wild-type strain was obtained from the Freshwater Algae Culture Collection at the Institute of Hydrobiology (FACHB-collection, Chinese Academy of Science, Wuhan, China). C. reinhardtii cells were cultured in liquid tris-acetate phosphate media (TAP) under 100 μmol (photons) m−2 s−1 white light with a 12 h photoperiod at 25 °C. Three-day-old cells in the logarithmic growth phase were collected for further experiments [26 (link)].
Fumagillin, mevastatin, radicicol, wortmannin, 3-(3,4-dichlorophenyl)-1,1-dimethylurea (DCMU), dimethyl sulfoxide (DMSO), and other chemical agents were purchased from Sigma-Aldrich (Shanghai, China). Four mycotoxins and DCMU stock solutions were dissolved in 100% DMSO and further diluted with sterile water. The final concentration of DMSO in the working solutions of all chemical agents was less than 1% (v/v).
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3

Screening of compounds against insect cell line

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The IPL-LD 65Y cell line (Lymantria dispar) was obtained from the Deutsche Sammlung von Mikroorganismen und Zellkulturen (DSMZ, Braunschweig, Germany, No. ACC 181) and was maintained for routine culture in TC-100 medium (Lonza, Basel, Switzerland) with 11% fetal calf serum (FCS, PromoCell, Heidelberg, Germany). The cells were seeded with an initial concentration of 2E+05 cells per ml in tissue culture flasks (Greiner bio-one, Frickenhausen, Germany) and incubated at 27°C in a cooling incubator (Thermo Fisher Scientific, Schwerte, Germany). Cells were routinely passaged every seventh day.
Several commercially available substances were used in the screening assay. Fumagillin, surfactin, paromomycin, and metronidazole were obtained from Sigma-Aldrich (Taufkirchen, Germany); quinine, ornidazole, albendazole, tinidazole, clioquinol, and dimethylsulfoxid (DMSO) were obtained from VWR International (Darmstadt, Germany).
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4

Seed Dormancy Regulation by ABA, SNP, and Fumagillin

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Seeds were surface sterilized in 5% (v/v) bleach for 5 min then washed with sterile water before plating (3–4 replicates, n = 50) onto water agarose supplemented with appropriate concentrations of ABA, 200 μM c-PTIO, and/or 1–5 μM fumagillin (Sigma). Following 4 days of chilling, seeds were incubated at 22°C under continuous light for 7 days. Germination was assessed as endosperm rupture by the radicle. For dormancy assays, seeds were collected from yellowing siliques of the primary bolt, plated as described above, and placed into continuous light or chilled for 4 days prior to transferring to the light (chilling control). Where appropriate, water agarose was supplemented with 200 μM SNAP. SNP dormancy break assays were set up using 200 μM SNP as described previously (Bethke et al., 2004 (link)). For chilling-time assays, seeds were stratified at 4°C for increasing periods of time and then transferred to light. All germination data are expressed as the mean with SEM.
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5

Intrathecal Anti-VEGF-A and Fumagillin Delivery

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The anti-VEGF-A monoclonal antibody (catalog no.05-443; Millipore, Bedford, MA, USA) was dissolved in physiological saline and prepared for i.t. injection at a concentration of 0.3 µg/10 µL. Fumagillin (F6771; Sigma-Aldrich, St Louis, MO, USA) was initially dissolved in dimethyl sulfoxide at a concentration of 0.5 mg/mL and stored at −20 °C in aliquots. This stock solution was then diluted in physiological saline for i.t. use at a concentration of 0.1 µg/10 µL.
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6

Mycotoxin Characterization and Interactions

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Standard mycotoxins aflatoxin B1, B2, M1 (certified grade, Cluzeau Info Labo, Ste Foy la Grande, France); fumagillin, gliotoxin, and verruculogen (Sigma-Aldrich (St. Louis, MO, USA) were tested alone and mixed at identical concentrations to those found in extracts.
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7

Fumagillin Absorption and Stability

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To study the absorption of fumagillin by mammalian cells, we seeded 1 × 106 cells/mL of the RAW 264.7 and A549 cell lines in a final volume of 2 mL of complete RPMI using 6-well plates. After 1 h of incubation to allow cell attachment, we replaced the medium with 2 mL of complete RPMI supplemented with 1 µg/mL of fumagillin (Sigma–Aldrich). Aliquots of 500 µL were collected after 8, 20, and 24 h of cell exposition in light-safe microtubes and processed as previously indicated until its measurement by UHPLC (Waters, Milford, CT, USA).
In order to study whether fumagillin binds to the cell line instead of being degraded, we grew RAW 264.7 and A549 cells in the presence of 2 µg/mL of toxin. After 24 h of exposition, we discarded the supernatants and, after a saline solution wash, we lysed the cells using 1 mL of RIPA buffer. Finally, we centrifuged the samples at 14,000 rpm for 5 min, and the supernatants were measured using the UHPLC method. A toxin degradation study was done by exposition of a 1 µg/mL fumagillin solution to different environmental conditions as 80 °C or exposition to light for 96 h and exposition to pH 1.
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