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26 protocols using polycarbonate membrane filter

1

Cell Invasion Assay Using Modified Boyden Chamber

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The modified Boyden chemotaxis chamber (Neuro Probe, Gaithersburg, MD, USA) assay used for the cell invasion analysis is based on a chamber with two medium filled compartments as previously described (Albini et al., 1987 (link)). Matrigel, a reconstituted basement membrane gel (BD Bioscience) was applied to a polycarbonate membrane filter (13 mm-diameter, 8.0 μm pore size, Whatman). The filter was placed above the lower chamber that contained serum-free DMEM with 0.1% bovine serum albumin (BSA; Sigma). HN4, HN12, HN30, or HN31 cells (1 × 105 cells) were resuspended in 0.1 mg/ml EAEP diluted in DMEM containing 0.1% BSA and seeded into the upper well of the chamber. The cells were incubated for 5 h, then the filters were fixed and stained with crystal violet for 10 min. The invaded cells were counted by two investigators using a microscope at 400×g magnification. The invaded cell counts were averaged from five randomly selected fields.
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2

Infection of Mice with T. gondii Prugniaud Strain

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T. gondii Prugniaud strain (PRU, type II) was maintained by passage in human foreskin fibroblast (HFF) monolayers. Tachyzoites were released from cells using 18-, 23-, and 27-gauge needles in succession. Parasites were separated from cell debris by filter sterilization (Polycarbonate Membrane Filter, Whatman) and resuspended in Dulbecco’s phosphate buffered saline (DPBS). Mice of each sex were either mock-infected with sterile DPBS or infected with 400 tachyzoites (2 parasites/μl) intraperitoneally.
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3

Modified Boyden Chamber Assay for HGF Migration

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The modified blind-well Boyden chamber migration assay was performed to evaluate the effect of the propolis extracts on HGF cell migration. The modified Boyden chemotaxis chamber (Neuro Probe, Gaithersburg, MD, USA) was used based on a chamber with two medium-filled compartments by modifying a previous method [27 (link)]. Briefly, collagen type I (Sigma-Aldrich) was applied to a polycarbonate membrane filter (13 mm diameter, 8.0 mm pore size, Whatman). The filter was placed above the lower chamber that contained serum-free DMEM with 0.1% bovine serum albumin (BSA, Sigma). HGFs (1 × 104 cells) were resuspended in HEP (15.62 μg/mL), EEP (40 μg/mL), or AEP (400 μg/mL) diluted in DMEM containing 0.1% BSA and seeded into the upper well of the chamber. The cell without propolis extract treatment was used as control. The cells were incubated for 5 h, and the filters were fixed and stained with crystal violet for 30 min. The migrated cells were counted by three investigators using a microscope at 400x magnification. The migrated cell counts were averaged from five randomly selected fields. Three chambers were used in each treatment. Three independent experiments were performed.
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4

Preparation of Soybean Lipid Vesicles

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l-α-Phosphatidylcholine from soybean and detergent used in this study were purchased from Sigma-Aldrich (Taufkirchen, Germany). Lipid mixtures solubilized in chloroform were first transferred to a round-bottom flask. A thin lipid film was formed by rotary evaporation under a controlled vacuum. The flask was then placed in a vacuum chamber overnight. The lipids were rehydrated in 1 mL of assay buffer A (50 mM HEPES-KOH, pH 7.5, 50 mM NaCl) to a final concentration of 40 mg/mL. The mixture was vortexed for 15 min to form multilamellar vesicles. The multilamellar vesicle solution was passed at least 21 times through an Avanti Polar Lipids (Alabaster, AL, USA) mini extruder holding a 200-nm Whatman polycarbonate membrane filter (Florham Park, NJ, USA) sandwiched with two filter supports on each side. The resulting unilamellar liposome solution was used for expression or water permeability experiments.
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5

In Vitro Differentiation of Toxoplasma-Infected Brain Cells

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Tachyzoites of the 76 K strain were collected from an infected HFF T25 flask and purified by sequential syringe passage with 17-gauge and 26-gauge needles and filtration through a 3 µm polycarbonate membrane filter (Whatman). Brain cells that were grown and matured in Neurobasal A medium for 14 days were infected by the parasite. For that, the correct amount of tachyzoites was resuspended in 50 µl of Neurobasal A medium and then added onto the brain cell culture. Approximately 2 × 105 brain cells were present in a well of a 24-well plate. Each well was infected by 3 × 104 tachyzoites to a multiplicity of infection of one parasite for around seven cells. The infected culture was maintained at 37°C in a humidified 5% CO2 incubator for the duration of the experiment without adding media to avoid disturbing the brain cell culture. A typical experiment yielded 2.5 × 104 cysts per well of a 24-well plate (around 12.5% of the 2 × 105 brain cells).
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6

Lung Explant Culture Protocol

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Lungs were dissected from mouse embryos in cold sterile Hanks’ Balanced Salt Solution under a stereomicroscope. The lungs were randomized by size and obvious outliers were excluded. The lungs were placed on a polycarbonate membrane filter (Whatman) floating on 1 ml of serum-free BGJb medium (Invitrogen) with penicillin/streptomycin in 60 mm Center-well Organ Culture Dishes (BD Falcon). The lung explants were positioned at the gas–liquid interface on the membrane filters. The Cultures were kept at 37°C in 5% CO2 and media was changed daily.
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7

Preparation and Radiolabeling of Liposomal Nanoparticles

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Liposomes were prepared as previously described (10 (link)). Briefly, DSPC (1,2-distearoyl-sn-glycero-3-phosphocholine), cholesterol, succinyl-DPPE (1,2-dipalmitoyl-sn-glycero-3-phosphoethanolamine-N-[succinyl]), mPEG2000-DSPE (1,2-distearoyl-sn-glycero-3-phosphorylethanolamine), and GT3 were mixed in chloroform, evaporated under N2 flow, and lyophilized overnight. Lipid film was hydrated in phosphate-buffered saline (PBS) at 65°C for 1 h, and the lipid dispersion was extruded through a 0.1-μm-pore Whatman polycarbonate membrane filter at 65°C. Liposome size distribution and ζ-potential at 25°C in PBS, pH 7.4, were determined by dynamic light scattering using Zetasizer Nano-ZS (Malvern). Further 64Cu labeling was performed by adding 64Cu-CuCl2 to the liposome at pH 5.5 with 0.2 M sodium acetate buffer at 50°C. The reaction was monitored by instant thin-layer chromatography silica gel paper using a 5 mM diethylenetriaminepentaacetic acid solution.
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8

Liposomal Calcein Encapsulation Protocol

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5mg total lipid with a ratio of 4:2:1 PC:PE:PS (Avanti polar lipids) in chloroform was dried under vacuum to give a solvent-free film. This was hydrated in 1ml of Calcein buffer (50mM calcein, 100mM NaCl, 10mM Na2HPO4 2mM KH2PO4) and freeze-thawed three times. The lipid suspension was then extruded 10 times through a 1μm polycarbonate membrane filter (Whatman) using a Mini Extruder (Avanti polar lipids). Un-encapsulated calcein was removed from the extruded suspension by size exclusion chromatography using sephadex G-50 resin (Sigma Aldrich), while PBS pH 7.5 (liposome buffer) was used as the aqueous phase buffer. Liposomes were stored at 4 °C and used within 1 week of creation.
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9

Evaluating CHL and PEI Combinations on P. aeruginosa Biofilms

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In order to determine the efficacy of the tested CHL and PEI combinations on bacteria embedded in biofilm matrix, P. aeruginosa was grown as a colony biofilm as previously described [34 (link)] with some modifications. Briefly, 10 µL from a diluted overnight culture (see above) were transferred to a sterilized polycarbonate membrane filter (25 mm diameter, 0.8 µm pore size, Whatman, Shrewsbury, MA, USA) placed on BHI agar plate. Plates were incubated at 37 °C for 4 days. Filters with the biofilm were subsequently transferred to a 6-well plate: a well for the sterility control, the membrane without the biofilm, a well for the positive control, membrane with biofilm on BHI agar without any antimicrobials and the rest four wells containing BHI agar mixed with different concentrations of CHL (2000, 1000, 500 and 250 µg mL−1) and fixed concentration of PEI (100 µg mL−1), as depicted in Figure 3. The plate was covered with a transparent seal, the lid was added, and the covered plate was incubated for 1 h at 37 °C in darkness to allow the diffusion of CHL and PEI into the agar through the membrane. Afterward, the plate was exposed to the red light. For viable cell enumeration, the biofilm biomass was resuspended in 10 mL phosphate-buffered saline (PBS) (137 mM NaCl, 2.7 mM KCl, 10 mM Na2HPO4, 1.8 mM KH2PO4, pH 7.4) by vigorous vortexing and serially diluted.
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10

Liposomal Calcein Encapsulation Protocol

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5mg total lipid with a ratio of 4:2:1 PC:PE:PS (Avanti polar lipids) in chloroform was dried under vacuum to give a solvent-free film. This was hydrated in 1ml of Calcein buffer (50mM calcein, 100mM NaCl, 10mM Na2HPO4 2mM KH2PO4) and freeze-thawed three times. The lipid suspension was then extruded 10 times through a 1μm polycarbonate membrane filter (Whatman) using a Mini Extruder (Avanti polar lipids). Un-encapsulated calcein was removed from the extruded suspension by size exclusion chromatography using sephadex G-50 resin (Sigma Aldrich), while PBS pH 7.5 (liposome buffer) was used as the aqueous phase buffer. Liposomes were stored at 4 °C and used within 1 week of creation.
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