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3 protocols using mab835

1

Western Blot Analysis of Liver Tumor Organoids

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Liver tumor organoids were lysed using sample buffer [62.5 mM Tris-HCl, pH 6.8, 34.7 mM sodium dodecyl sulfate (SDS), 5% β-mercaptoethanol, and 10% glycerol], sonicated, boiled for 5 min, subjected to SDS-polyacrylamide gel electrophoresis, and transferred onto a polyvinylidene difluoride membrane (Millipore). Sonication was performed using a VCX 500 sonicator (Sonics, Newtown, CT, USA) with 20% amplitude for 4 s in a 1 s-on/1 s-off mode. The membrane was blocked with 5% skim milk in Tris-HCl-buffered saline containing 0.05% Tween 20 (TBST) for 30 min and incubated overnight at 4 °C with primary antibodies against TRAIL (AF375; R&D Systems, Minneapolis, MA, USA), cleaved caspase-3 (CC3, MAB835; R&D Systems), caspase-3 (pro-C3, MAB707; R&D Systems), and GAPDH (sc47724; Santa Cruz Biotechnology, Santa Cruz, CA, USA). The membrane was washed thrice for 5 min with TBST and incubated with horseradish peroxidase-conjugated secondary antibodies (7074S and 7076S; Cell signaling Technology Danvers, MA, USA, or AP106P; Millipore) for 1 h. After washing thrice with TBST, the bands were visualized using EZ-Western Lumi Pico or Femto (Dogen, Seoul, Republic of Korea) and recorded using a ChemiDoc XRS+ System with Image LabTM software Version 5.2.1 (Bio-Rad Laboratories, Hercules, CA, USA).
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2

NLGN3 Shedding in Optic Nerve Lysates

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Optic nerves were lysed in RIPA buffer (Santa Cruz Biotechnology sc-24948) supplemented with 1× phosphatase inhibitor (Thermo Fisher Scientific 78428) and 1× protease inhibitor (Thermo Fisher Scientific 87786). Protein concentrations were determined using the Pierce BCA protein assay kit (Thermo Fisher Scientific 23225). Twenty μg of optic nerve lysate or 5 μg of conditioned medium was used for SDS–PAGE. PVDF membranes were subsequently blocked in 5% BSA and Tris buffered saline with 1% Triton X-100 (TBST), followed by primary antibody (rabbit anti-NLGN3, 1:500, Novus NBP1-90080 lot B118108; rabbit anti-β-actin, 1:10,000, Cell Signaling 4970 lot 15; rabbit anti-ADAM10, 1:250, Abcam ab124695 lot GR3244660-5; rabbit anti-cleaved caspase-3, 1:500, R&D Systems MAB835 lot KHK051810A; and rabbit anti-caspase-3, 1:1,000, Cell Signaling 9662 lot 19) incubation overnight at 4 °C and secondary antibody (1:10,000 anti-rabbit IgG-HRP, Cell Signaling 7074) incubation for 1 h at room temperature. Blots were developed using the SuperSignal West Femto Chemiluminescent Substrate (Thermo Fisher Scientific 34095), imaged on a Bio-Rad Gel Doc imager using Image Lab software (v.6) and analysed using Image Studio Lite (v.5.0.21). The intense overexposed full-length NLGN3 band was cropped out to allow for easy identification of shed NLGN3.
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3

Western Blot Antibody Protocol

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Western blot was conducted as previously described [35 (link)]. The antibodies for Western blotting were as follows: Mcl-1 (#5453, 1:1000, Cell Signaling Technology, Danvers, MA, USA), p-Chk1 (#2348, 1:1000, Cell Signaling Technology, Danvers, MA, USA), caspase-7 (#9492S, 1:1000, Cell Signaling Technology, Danvers, MA, USA), Bak (#3814, 1:1000, Cell Signaling Technology, Danvers, MA, USA), γH2AX (#9718, 1:1000, Cell Signaling Technology, Danvers, MA, USA), CDC20 (10252-1-AP, 1:1000, Proteintech, Rosemont, IL, USA), Bax (50599-2-Ig, 1:1000, Proteintech, Rosemont, IL, USA), Puma (55120-1-Ap, 1:1000, Proteintech, Rosemont, IL, USA), Bcl-2 (12789-1-Ap, 1:1000, Proteintech, Rosemont, IL, USA), Bcl-xL (10783-1-Ap, 1:1000, Proteintech, Rosemont, IL, USA), cleaved caspase-3 (MAB835, 1:1000, R&D Systems, Minneapolis, MN, USA), cleaved caspase-9 (sc8355, 1:1000, Santa Cruz, CA, USA), Rad51 (ab133534, 1:1000, Abcam, Cambridge, UK), apaf1(ab234436, 1:1000, Abcam, Cambridge, UK) and β-actin (T0022,1:3000, Affinity, San Francisco, CA, USA).
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