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Cd4 rm4 5

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The CD4 (RM4-5) is a laboratory equipment product manufactured by Thermo Fisher Scientific. It is used to detect and quantify the expression of the CD4 protein, which is a marker for a specific subset of T cells. The core function of this product is to facilitate the analysis and measurement of CD4-positive cells in various research and clinical applications.

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29 protocols using cd4 rm4 5

1

Immune Cell Depletion in Tumor Model

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Mice were administered 100 μg/dose of anti-CD8 (clone 2.43, Bio X Cell, West Lebanon, NH), anti-CD4 (clone GK1.5, Bio X Cell), anti-NK1.1 (clone PK136, Bio X Cell), or the corresponding isotype control antibody, intraperitoneally, on the day of tumor challenge. Depletion antibodies were continuously administered every 3–4 days until the end of the study. To confirm successful depletion (>95%) of the target population, blood from mice was collected, stained for B220 (clone RA3-6B2, BD Biosciences), CD3ε (clone 145–2C11, Thermo Fisher Scientific), CD8 (clone H35–17.2, Thermo Fisher Scientific), CD4 (RM4–5, Thermo Fisher Scientific), and NKp46 (29A1.4, Thermo Fisher Scientific), and analyzed by flow cytometry.
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2

Isolation and Analysis of Lymphocytes

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Spleen and lymph node samples were forced through 100 μm filters to prepare single-cell suspensions. Dead cells were removed by gradient centrifugation with lymphocyte M (Cedarlane, Burlington, NC, USA) and live cells were stained with surface antibodies for FACS analysis. To isolate lymphocytes from colon, less than 0.1 cm colon pieces were cut and digested at 37°C with 3 mg mL−1 dispase II (Thermo Fisher Scientific, Waltham, MA, USA), 1 mg mL−1 collagenase D (Roche) and 0.1 mg mL−1 DNase I (Roche) for 1 h until no visible pieces were present. The digested tissue was passed through a 100 μm filter, followed by centrifugation on a Percoll gradient.
For intracellular staining, the cells were first stained with antibodies for surface marker expression, then permeabilized and stained with antibodies for intracellular protein for 1 h using Foxp3 Staining Buffer Set (Thermo Fisher Scientific, Waltham, MA, USA). Data were collected in a FACSCalibur flow cytometer (BD Biosciences, San Jose, CA, USA) and analyzed using FlowJo software (BD, Franklin Lakes, NJ, USA). Antibodies to the following markers were used: CD4 (RM4–5, Thermo Fisher Scientific), CD3 (145–2C11, Biolegend, Dedham, MA, USA), TCRβ (H57–597, BD Biosciences), RORγt (AFKJS-9, Thermo Fisher Scientific), CD25 (PC61, BD Biosciences), Foxp3(FJK-16s, Thermo Fisher Scientific).
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3

Multiparametric Flow Cytometry Analysis

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LIVE/DEAD Fixable Red or LIVE/DEAD Fixable Aqua (Invitrogen) staining was performed at 4°C or on ice for 15 min in PBS. Surface Ab staining was performed at 4°C or on ice for 20 min in PBS containing 2% FBS and 2 mM EDTA. For staining intracellular transcription factors, fixation and permeabilization was performed with the eBioscience Intracellular Fixation & Permeabilization Buffer Set Kit prior to intracellular staining for 1 h at 4°C or on ice. Abs for flow cytometry included CD4 (RM4-5; Invitrogen), CD8 (53-6.7; eBioscience), CD25 (PC61; BD Biosciences), CD44 (IM7; eBioscience), CD62L (MEL-14; BD Biosciences), and Foxp3 (FJK-16S; eBioscience). Cells were analyzed or sorted on LSR II, LSRFortessa, and FACSAria II flow cytometers (BD Biosciences) with BD FACSDiva software. Data analysis was performed using FlowJo v.10.2 (Tree Star). FACS data presented in Fig. 3 are gated on forward scatter and side scatter properties indicative of singlet lymphocytes and live CD4+CD8(CD4SP) cells.
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4

Single Cell Isolation from Murine Tissues

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Lung tissue was cut up, incubated in 30 µg/mL DNAse and 1 mg/mL collagenase for 30 minutes in a 37°C shaking incubator and passed through a 70 µm cell strainer to generate single cell suspensions. BAL cells were recovered through washing with 3 mL of ice cold PBS. Peritoneal exudate cells (PEC) were recovered in a total of 5 mL of ice cold PBS. For flow cytometry, lung, BAL and PEC were blocked with 0.6 µg Rat IgG and 0.6 µg αCD16/32 (2.4G2, 5′), stained for 25′ with antibodies for SiglecF (E50-2440), Ly6G (1A8), MHCII (M5/114.15.2) all from BD Biosciences; F4/80 (BM8), CD115 (AFS98), Ly6C (HK1.4), CD3 (17A2), CD11b (M1/70), CD11c (N418) all from eBioscience, Affymetrix; CD4 (RM4-5 from Invitrogen). Cells were then washed and analyzed on the LSRII (BD Bioscience), followed by data analysis using FlowJo v10 (Tree Star Inc.). Cells were sorted by flow cytometry using FACSAria (BD Bioscience), and re-analyzed for purity on the LSRII (BD Bioscience).
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5

Multiparametric Flow Cytometry Analysis

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LIVE/DEAD Fixable Red or LIVE/DEAD Fixable Aqua (Invitrogen) staining was performed at 4°C or on ice for 15 min in PBS. Surface Ab staining was performed at 4°C or on ice for 20 min in PBS containing 2% FBS and 2 mM EDTA. For staining intracellular transcription factors, fixation and permeabilization was performed with the eBioscience Intracellular Fixation & Permeabilization Buffer Set Kit prior to intracellular staining for 1 h at 4°C or on ice. Abs for flow cytometry included CD4 (RM4-5; Invitrogen), CD8 (53-6.7; eBioscience), CD25 (PC61; BD Biosciences), CD44 (IM7; eBioscience), CD62L (MEL-14; BD Biosciences), and Foxp3 (FJK-16S; eBioscience). Cells were analyzed or sorted on LSR II, LSRFortessa, and FACSAria II flow cytometers (BD Biosciences) with BD FACSDiva software. Data analysis was performed using FlowJo v.10.2 (Tree Star). FACS data presented in Fig. 3 are gated on forward scatter and side scatter properties indicative of singlet lymphocytes and live CD4+CD8(CD4SP) cells.
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6

Tumor Immune Cell Profiling

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Tumor and surrounding regions were delineated macroscopically. Tissues were dissociated through 100 µm cell strainers in PBS with 3% bovine serum albumin (BSA). Hepatocytes were removed by centrifugation on a 35% Percoll gradient at 700 × g at 21°C for 12 min. Leukocytes present in the pellet were resuspended in red blood cell lysis buffer (0.15 M NH4Cl, 0.1 mM KHCO3, 0.1 mM Na2-EDTA in water; pH 7.2) for 1 min, washed, and then resuspended in PBS with 3% BSA. Cell suspensions were incubated with anti-mouse CD16/CD32 (Becton Dickinson, BD, USA) to block Fc receptors and Fixable Viability Dye eFluor 506 (eBioscience, San Diego, CA, USA). Cells were then stained with a cocktail of directly conjugated mAbs [CD3 (17A2) BD, CD4 (RM4-5) eBioscience, CD8 (53-6.7) BioLegend, CD45 (30-F11) BioLegend and Foxp3 (NRRF-30) eBioscience] for 30 min at 4°C. Intracellular staining was performed with a transcription factor staining buffer set from (eBioscience). The relevant fluorescence-minus-one labeling conditions including the appropriate isotype-matched mAb were used as controls. All samples were acquired on an LSR Fortessa flow cytometer (BD) and analyzed with FlowJo version 9.3.1 or above (Tree Star, Ashland, OR, USA).
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7

Multiparametric Flow Cytometry Analysis

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Single cell suspensions of spleen or draining lymph node were immunostained using various combinations of the following fluorescence-conjugated antibodies: CD4 (RM4-5; eBioscience), CD25 (37.51; BioLegend), Foxp3 (FJK-16 s; eBioscience), IL-17 (eBio17B7, eBioscience), TNF-α (MP6-XT22; BD Pharmingen), IFN-γ (XMG1.2; eBioscience), IL-4 (11B11; BD Pharmingen), and IL-10 (JES5-16E3; eBioscience). These cells were also intracellularly stained with the following antibodies: TNF-α, IL-17, IFN-γ, IL-10, and Foxp3. Prior to intracellular staining, cells were restimulated for 4 h with 25 ng/ml phorbol myristate acetate (PMA) (Sigma-Aldrich) and 250 ng/ml ionomycin (Sigma-Aldrich) in the presence of GolgiSTOP (BD Pharmingen). Intracellular staining was conducted using an intracellular staining kit (eBioscience) according to the manufacturer’s protocol. Flow cytometric analysis was performed on a FACS_LSR Fortessa (BD Pharmingen).
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8

Isolation and Characterization of Brain-Infiltrating T Cells in EAE Mice

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On day 22 post immunization mononuclear cells were isolated from whole brains of perfused mice with EAE, following homogenisation and centrifugation on a Percoll gradient. Mononuclear cells (MNC) (2 × 106/ml) were stimulated for 4 h with PMA (10 ng/ml) and ionomycin (1 µg/ml) in the presence of brefeldin A (5 µg/ml). Cells were washed in PBS and re-suspended in 50 µL PBS with 1:1,000 LIVE/DEAD® Fixable Aqua Dead Cell Stain kit (Life Technologies) for 20 min. Surface stains for CD3 (145-2c11) (0.5 µl/106 cells), CD4 (RM4-5) (0.5 µl/106 cells) and γδ TCR (GL3) (1 µl/106 cells) (eBioscience) were added and cells were incubated for a further 20 mins. Cells were then fixed with 2% paraformaldehyde and washed in PBS twice, before being intracellularly stained for IL-17 or IFN-γ in permeabilization buffer (0.2% saponin in PBS + 1% FBS). Flow cytometric analysis of MNC was performed using a BD LSRFortessa™ (BD Biosciences) and analysed with FlowJo software. MNC were first gated on live CD3+ T cells followed by CD4 expression, γδ TCR expression or cytokine production.
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9

Quantitative Immunofluorescence Imaging of Intestinal Tissues

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Intestinal tissues were fixed in 4% paraformaldehyde, rehydrated in 20% sucrose, and frozen in OCT media (Sakura). Tissues were cut into 7-8μm sections and treated with ice cold acetone. Sections were treated with biotin-avidin blocking reagent when necessary (Vector labs) and stained with the following biotinylated or directly conjugated antibodies: CD8β (YTS156.7.7, Biolegend), CD4 (RM4-5, eBioscience), CD103 (M290, BD Biosciences), CD90.1 (HIS5.1, eBioscience), Epcam (G8.8, Biolegend), CD11c (HL3, BD Biosciences), B220 (RA3-6B2, eBioscience). Rabbit anti-Yersinia pseudotuberculosis (ab26120, Abcam) and anti-rabbit Dylight 649 (ab96926, Abcam) were used to stain for bacterial antigens. Stained slides were mounted with Prolong Gold antifade reagent (Invitrogen), imaged using a Nikon 90i, and analyzed using Adobe Photoshop software.
The number of OT-I cells/villus was determined by sectioning a ‘Swiss roll’52 (link) of the distal third of the small intesine. Five or more sections/mouse that were at least 400μm apart were stained and imaged. A villus and the underlying submucosa and muscularis were considered a single villus, and the number of OT-I cells in each region was determined. The number of OT-I cells/villus were binned and plotted as the percentage of villi containing a given range of OT-I cells.
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10

Characterization of T Cell Subsets

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Mouse specific antibodies against CD3ε/γ (17A2; Biolegend), CD4 (RM4-5; eBioscience), CD25 (PC61.5; eBioscience), CD44 (IM7; BD Biosciences), CD62L (MEL-14; Life Technologies), CD126 (D7715A7; eBioscience), CD127 (25-1271-82; eBioscience),βTCR (H57-597), gp130 (125623; R&D Systems), IFNγ (XMG1.2; eBioscience), IL-4 (11B11; eBioscience), IL-17A (TC11-18H10.1; Biolegend), IL-21 (Recombinant mouse IL-21R Fc Chimera protein; R&D and IL-21 receptor antibody; Jackson Immuno Research) and PTPN2 (AF1930; R&D) were used. For detection of human antigens, we used antibodies specific to CD3 (UCHT1; BioLegend), CD4 (RPA-T4; eBioscience), CD45RA (HI100; BioLegend), CD45RO (UCHL1; BioLegend), CD62L (DREG-56; BD Biosciences), CD197 (CCR7; G043H7; BioLegend). Human and mouse cross-specific antibodies to pY STAT1 (pY701; 4a), pY-STAT3 (pY705; 4/P-STAT3), pS-STAT1 (pS727; K51-856) and pS STAT3 (pS727, 49/p-Stat3) were from BD Biosciences.
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