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14 protocols using alpelisib

1

In Vitro and In Vivo Drug Testing Protocols

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For in vitro doxorubicin drug testing, OS cells were cultured for 14 days and exposed to drug at the dose(s) indicated in each figure for 48 hours. IGF-1R inhibitor (PPP) and IGFBP-5 treatments were administered at 10nΜ and 100 ng/mL, respectively, for 48 hours. For in vitro treatment with alpelisib and cetuximab, PDX cells were first cultured for 7 days then exposed to each drug across a wide range of dose(s) for up to 21 days. In vitro cell viability was quantified using bioluminescence imaging (BLI) or Alamar Blue Cell Viability reagent (Thermo Fisher Scientific). IC50 values for alpelisib and cetuximab treatment in vitro were estimated by performing non-linear curve fitting using the model log(inhibitor) vs. response on GraphPad Prism. For in vivo doxorubicin treatment, mice were treated with 4 mg/kg of doxorubicin following 14 days of tumor inoculation and tumor burden was assessed using BLI before treatment and after 48h of treatment. For in vivo alpelisib experiments, mice were treated daily with 50mg/kg of alpelisib (MedChem Express) following 7 days of tumor inoculation. Tumor burden was evaluated using BLI twice per week. For all assays, cell viability after drug treatment was normalized to untreated controls.
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2

Xenograft Model of Breast Cancer

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A total of 1 × 107 MCF7 cells were resuspended in 50% Matrigel (BD) and injected into the third mammary fat pads of nulliparous NCR nude mice (Taconic) receiving 1 μmol/L β-Estradiol (Sigma) in drinking water, and palpable tumors were measured every 3 days. For the inhibitor studies, mice were treated daily once tumors exceeded 150 mm3. Alpelisib (MedChemExpress) was reconstituted in 0.5% methylcellulose (Sigma) and administered by oral gavage (35 mg/kg) once daily prior to tumor isolation and preparation. MI-503 (MedChemExpress) was reconstituted in 25% DMSO, 25% PEG400, and 50% PBS and administered by intraperitoneal injection (30 mg/kg) once daily prior to tumor isolation and preparation. Tumors were isolated and prepared within 3 hours of treatment. All mouse experiments were conducted in accordance with protocols approved by the Institutional Animal Care and Use Committee of Emory University School of Medicine.
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3

Cytokine and Inhibitor Evaluation in Cancer Cells

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Recombinant Human TNF-α (Cat. No. 300-01A), IFN-γ (Cat. No. 300-02), and insulin growth factor (IGF; Cat. No. 100-11) were purchased from PeproTech (Cranbury, NJ, USA). Sodium butyrate (Cat. No. S1200) and cisplatin (Cat. No. C2210000) were purchased from Sigma-Aldrich (Saint Louis, MO, USA). The inhibitors CUCD-101 (Cat. No. HY-10223), decitabine (HY-A0004), santacruzmate A (HY-N0931), zebularine (HY-13420), olaparib (HY-10162), alpelisib (HY-15244), and MK-2206 (HY-108232) were all purchased from MedChemExpress (Sollentuna, Sweden). Fulvestrant (ICI 182,780; Cat. No. 1047) was obtained from Tocris Bioscience (Bristol, UK). A medium containing 0.5% DMSO was used as a vehicle-only control for the experiments.
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4

Profiling PI3K and ALK Inhibitors

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The PI3K inhibitor copanlisib, TGX-221, alpelisib, idelalisib, and LY294002 were purchased from MedChemExpress (Princeton, New Jersey, USA). The PI3K inhibitor pictilisib, the ALK inhibitor crizotinib and NVP-TAE684 were obtained from ADOOQ (Irvine, California, USA). The antibodies against ALK, phospho-ERK1/2, Akt1/2, N-Myc, GAPDH, and beta-actin were purchased from Santa Cruz Biotechnology (Santa Cruz, California, USA). Antibodies targeting Phospho-Akt (Ser473), Phospho-S6 Ribosomal Protein (Ser235/236), S6 Ribosomal Protein, and anti-Phospho-Histone H3 (Ser10) were purchased from Cell Signaling Technology (Danvers, Massachusetts, USA). Other antibodies used in this study included anti-MAPK1/2 (Milipore, NG1946), anti-β-Tubulin antibody (Abcam, Ab6046).
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5

AGEs-BSA Compound Preparation Protocol

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We purchased AGEs-BSA (AGEs) from Abcam (DBA, Milan, Italy); the FPS-ZM1, BSA and N-acetyl-L-cysteine (NAC) from Merck Life Science (Milan, Italy). The Trametinib, Alpelisib and Reparixin were obtained from MedChemExpress (DBA, Milan, Italy). The anti-IL-8 neutralizing antibody (MAB208) was acquired from R&D Systems (Bio-Techne, Milan, Italy). All of the compounds were solubilized in dimethyl sulfoxide (DMSO), except for AGEs-BSA and BSA that were dissolved in phosphate-buffered saline (PBS), and NAC that was solubilized in water.
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6

Synthesis of STX-478 via WO2022265993

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STX-478 was prepared according to the procedure reported in WO2022265993 (Compound 80; ref. 45 ). Alpelisib (>99% purity) was purchased from MedChemExpress (#HY-15244).
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7

Inhibition of Signaling Pathways

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Insulin and Metformin were purchased from Merck Life Science (Milan, Italy). The MEK inhibitor trametinib, the Insulin receptor inhibitor OSI-906 and the PI3Kα inhibitor alpelisib were obtained from MedChemExpress (DBA, Milan, Italy). The CXCR4 antagonist AMD3100 was purchased from Santa Cruz Biotechnology (DBA, Milan, Italy). All compounds were dissolved in DMSO, except Insulin, Metformin and AMD3100 that were solubilized in water.
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8

Synthesis of STX-478 via WO2022265993

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STX-478 was prepared according to the procedure reported in WO2022265993 (Compound 80; ref. 45 ). Alpelisib (>99% purity) was purchased from MedChemExpress (#HY-15244).
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9

Combination Therapy for Cancer

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Alpelisib (HY-15244, Medchem Express) was used at 1 µM; Palbociclib (PZ0383, Sigma) was used at 1 µM in DMSO; and Docetaxel (Docetaxel Accord, Gustave Roussy pharmacy, Villejuif, France) was used at 20 nM in Ethanol. Dose was based on prior 2D assays (Figure S1) and Gustave Roussy clinicians’ expertise.
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10

Investigating Combination Therapies in Cancer

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Curcumin (S1848), lapatinib (S2111), brigatinib (S8229), MK-0752 (S2660), sapitinib (S2192), and WP1066 (S2796) were all purchased from SellekChem. Cobimetinib (HY-13064), selumetinib (HY-50706), alpelisib (HY-15244), and trametinib (HY-10999) were purchased from MedChemExpress. Rapamycin (SC3504A) was acquired from SantaCruz Biotechnology and curcuplex-95 from Xymogen.
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