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11 protocols using ab238135

1

Quantifying Protein Expression via Western Blot

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The total protein was extracted using a radioimmunoprecipitation assay, and the bicinchoninic acid (Beyotime, Shanghai, China) method was employed to quantify the concentration. The protein sample was first electrophoresed for 2h; subsequently, the authors transferred the total protein onto polyvinylidene difluoride membranes (Millipore, Billerica, MA, USA). TBST containing 5% skim milk was used to block non-specific antigens for 1h following incubating with primary antibodies (caspase-3 [1:1,000, ab32351; Abcam], c-caspase-3 [1:1,000, ab32042; Abcam], CREB1 [1:1,000, ab32515; Abcam], p-CREB1 [1:1,000, ab32096; Abcam], Bcl-2 [1:1,000, ab182858; Abcam], PSD-95 [1:1,000, ab238135; Abcam], synaptophysin [1:1,000, ab32127; Abcam], synapsin [1:1,000, ab254349; Abcam], GAPDH [1:1,000, ab8245; Abcam], and β-actin [1:5,000, #A5441, Sigma]) at 4°C overnight. Membranes were washed with TBST three times and incubated with the secondary HRP-conjugated goat anti-rabbit IgG (1:5,000 dilution; cat. ab205719; Abcam). Subsequently, membranes were washed with TBST three times. Blots were then visualized using enhanced chemiluminescence (GE Healthcare Life Sciences, Little Chalfont, UK).
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2

Western Blot Protein Analysis

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Western blot and analysis were carried out, as described previously (Liu et al., 2011 (link)). In brief, proteins (5–10 μg of total protein) were separated by SDS-PAGE, transferred to PVDF membranes, and blocked in 5% skimmed milk. The primary antibodies were rabbit anti-APP (1:2000, ab241592, Abcam), rabbit anti-PSD-95 (1:1000, ab238135, Abcam), or mouse anti-β-actin (1:4000, #3700, CST). The secondary antibodies were corresponding horseradish peroxidase–conjugated ones. A chemiluminescent substrate kit (Thermo Fisher Scientific, United States) was used and developed by using an X-ray film (Kodak) in the dark room. The developed films were scanned, and the percentage of the band relative intensity was analyzed by ImageJ software.
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3

Comprehensive Western Blot Analysis of Neural Markers

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Western blotting was performed as previously described (Huang et al. 2018 (link)) with the diluted primary antibodies NeuN (1: 300, cat. # ab104224, Abcam), GFAP (1: 300, cat. # ab7260, Abcam), Iba-1 (1: 300, cat. # ab178846, Abcam), caspase-1 (1: 100, cat. # sc-56036, Santa Cruz), NLRP3 (1: 1,000, cat. # DF7438, Affinity), ASC (1: 1,000, cat. # ab47092, Abcam), Gasdermin D (GSDMD, 1: 500, cat. # sc-393581, Santa Cruz), IL-1β (1: 1,000, cat. # ab254360, Abcam), IL-18 (1: 1000, cat. # ab207323, Abcam), BDNF (1: 1000, cat. # ab108319, Abcam), PSD95 (1: 1000, cat. # ab238135, Abcam), Syna (1: 1000, cat. # ab32127, Abcam), and GAP43 (1: 1000, cat. # ab75810, Abcam) and incubated for 12 h at 4 °C. After being washed three times with 0.1 M PBS, the membranes were incubated with HRP-conjugated anti-rabbit or anti-mouse secondary antibodies (diluted to 1: 5000, Abcam, USA) for 2 h at RT. Finally, the protein bands were visualized using a Western blotting detection kit (Wanleibio, China).
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4

Hippocampal Protein Analysis by Western Blot

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Hippocampal tissues were homogenized in RIPA cell lysate (Beyotime, P0013B), centrifuged at 12,000 × g for 15 min, and the supernatant was collected. Each protein sample was loaded into the sodium dodecyl sulfate-polyacrylamide gel electrophoresis gel spiked wells. Electrophoresis was performed at constant pressure of 80 V for approximately 1 h. The proteins were transferred to a polyvinylidene fluoride membrane (Millipore, IPVH00010), fixed with western closure solution (5% skim milk powder), slowly shaken on a shaker for 2 h at room temperature, and then incubated with the following primary antibodies: rabbit anti-postsynaptic density-95 (PSD-95) antibody (1:2000, abcam, ab238135), rabbit anti-synaptophysin (SYN) antibody (1:1000, Bioss, bs-8845R), rabbit anti-BDNF antibody (1:1000, abcam, ab108319), and rabbit tyrosine kinase receptor B (TrkB) antibody (1:5000, abcam, ab187041). The samples were further incubated with horseradish peroxidase-conjugated goat anti-rabbit IgG secondary antibody (1:20000, Zsbio, ZB-2301) for 1.2 h. The membranes were washed with phosphate-buffered saline with Tween and the ECL luminescence kit (Thermo, 340,958) was used to detect the proteins. Finally, the intensity of the bands was analyzed by Image J software (Media Cybernetics, United States).
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5

Immunohistochemistry of Mouse Retinal Cells

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Mouse eyes were prepared and sectioned for IHC as previously described.21 Primary antibodies were GFAP (1:500, catalog Mab360, MilliporeSigma, RRID: AB_11212597), PSD95 (1:100, catalog ab238135, Abcam, RRID: AB_2895158), Red/Green Opsin (1:250, catalog AB5405, MilliporeSigma, RRID: AB_177456), PKCα (1:250, catalog sc8393, Santa Cruz Biotech, RRID: AB_628142), Blue Opsin (1:250, catalog AB5407, MilliporeSigma, RRID: AB_177457), Glutamine Synthetase (1:250, catalog MA5-27749, Invitrogen, RRID: AB_2735204), RBPMS (1:250, catalog ab152101, Abcam, RRID: AB_2923082), IBA1 (1:500, catalog ab178846, Abcam, RRID: AB_2636859) and VGLUT1 (1:250, catalog 48-2400, Thermo Fisher Scientific, RRID: AB_2533843). Secondary antibodies were Goat anti-Mouse Alexa Fluor 488 (1:1000, catalog A11001, Thermo Fisher Scientific, RRID:AB_2534069) and Goat anti-Rabbit Alexa Fluor 594 (1:1000, catalog A11012, Thermo Fisher Scientific, RRID:AB_2534070). Slides were imaged on a Leica SP8 laser scanning confocal microscope using a 25× water immersion objective lens or a 63× oil immersion objective lens. N = three mice and three or more sections per eye were used for analysis.
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6

Multimodal Brain Tissue Analysis

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Rats (n = 4 per groups) were deeply anesthetized with 10% pentobarbital (10 mL/kg) and slowly perfused with 300 mL of phosphate buffer saline (PBS, pH 7.2), followed by 300 mL of 4% paraformaldehyde (PFA). The brain was removed and immobilized in 4% PFA for 72 h and then dehydrated in 30% sucrose for 72 h. Tissues on slides were treated with 0.2% Triton X-100 and blocked with 5% goat serum. The slide was incubated overnight at 4 °C with the following primary antibodies: Ki-67 (D3B5) Rabbit mAb (Ki-67, 9129, Cell Signaling); Anti-Doublecortin (DCX, ab254133, Abcam); Anti-Iba1 antibody (Iba-1, ab178846, Abcam); Anti-PSD95 antibody (ab238135, Abcam); Anti-CD68 antibody (ab125212, Abcam), Neuronal nuclei (E4M5P) Mouse mAb (NeuN, 94403, Cell Signaling). Anti-ZO1 tight junction protein antibody (ZO-1, ab221547, Abcam) and Anti-Claudin 1 antibody (Claudin-1, ab211737, Abcam). After the primary antibodies were rinsed with PBS, the tissues were covered with Alexa Fluor® 488- and Alexa Fluor® 594-conjugated fluorescent secondary antibodies and incubated in the dark for 60 min. After rinsing the secondary antibodies with PBS, 4,6-Diamidino-2-phenylindole (DAPI)solution was added, and the slides were incubated in the dark for 3–5 min. The slides were observed with an Olympus BX53 fluorescent microscope equipped with a DP74 Microscope Digital Camera.
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7

Hippocampal Protein Expression Analysis

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Hippocampal tissues or cells were homogenized in buffer (0.5 mol/L Tris; 1% NP40; 1% Triton X-100; 1 g/L sodium dodecyl sulfate; 1.5 mol/L NaCl; 0.2 mol/L EDTA; 0.01 mol/L EGTA; and protease inhibitor and/or phosphatase inhibitor), sonicated, and incubated at −20°C for 20 minutes, followed by centrifugation at 12,000 g for 20 minutes at 4°C. The supernatant was collected and protein concentration determined by the bicinchoninic acid (BCA) method. Next, 50 μg protein were loaded on 10% SDS polyacrylamide gel. The primary antibodies used were anti-TRPC6 (Alomone, ACC-017), anti-PSD 95 (Abcam, ab238135), anti-SNAP25(Abcam, ab109105), anti-SYP (Abcam, ab32127), anti-MFN1 (Abcam, ab126575), anti-MFN2 (Abcam, ab124773), anti-Drp1(Abcam, ab184247), anti-p-Drp1(mice Ser 622; CST, 3455), anti-p-Drp1 (mice Ser 643; Abcam, ab193216), anti-GLUT1-5 antibody (Affinity, AF6731, DF7510, AF5463, AF5386, DF13545), anti-SGLT1 (Invitrogen, PA5-77460), and anti-SGLT2 (Abcam, ab137207), followed by incubation with the secondary antibodies (ZSGB-BIO). Protein expression was normalized to GAPDH intensity or total protein content. See complete unedited blots in the supplemental material.
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8

Protein Expression Analysis in Brain Regions

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Proteins from the basal forebrain or hippocampus were extracted according to the manufacturer's instructions (C500007, Sangon Biotech, China), and then separated by SDS‐polyacrylamide gel electrophoresis. After separation, the proteins were transferred onto polyvinyl difluoride membranes (10600023, GE, USA). After blocking, the membranes were incubated overnight at 4°C with rabbit anti‐BDNF (1:2000; ab108319, Abcam, USA), rabbit anti‐PSD95 (1:2000; ab238135, Abcam, USA), or GAPDH (1:20,000; ab181603, Abcam) antibody. On the following day, membranes were washed then incubated for 1 h at room temperature with Tris‐buffered saline containing 0.1% Tween 20 (TBST) and the horseradish peroxidase (HRP)‐conjugated secondary antibody IgG‐HRP (ab6721, Abcam). Densitometric analysis was performed using the BioRad Western blot detection system. GAPDH was used as the internal control.
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9

Quantifying BDNF and PSD95 in Mouse Hippocampus

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The hippocampal tissues were harvested and fixed with 4% paraformaldehyde in PBS to investigate BDNF and PSD95 protein expression after finishing MWM. Then, hippocampal tissues sections (5 μm) from the brain were cut and blocked with Tris‐buffered saline containing 0.1% Tween 20 (TBST) and 5% goat serum for 1 h at room temperature. The slides were incubated overnight at 4°C with a rabbit anti‐BDNF antibody (1:200; ab108319, Abcam, USA) or PSD95 (1:100; ab238135, Abcam, USA). On the following day, sections were washed three times and incubated at room temperature with goat anti‐rabbit IgG H&L (1:5000, ab6717, Abcam, USA). Hippocampal slices from each mouse were analyzed using imaging observation equipment (LEICA DMI8, LEICA, Germany) to observe immunohistochemistry staining. Cases were scored as negative if no or only weak BDNF or PSD95 staining was observed. Three sections were obtained from each mouse (n = 4 in each group), and three visual fields were randomly selected and observed in each tissue section. The cells were counted, and the mean rates of positive cells from each mouse were compared between the aCSF group and ASO7 group. All quantitative analyses were performed by an experimenter blinded to the group assignment.
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10

Immunohistochemical Analysis of Brain Slices

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The brain slices were washed 3 times with PBS for 5 min each time and then treated with 0.1% Triton X-100 (Beyotime Biotechnology, ST795, Shanghai, China) diluted with PBS for 20 min. Then, slices were placed in 5% BSA (Beyotime Biotechnology, ST023, Shanghai, China) diluted with PBS and sealed at room temperature for 1 h. After incubating overnight with the primary antibody [rabbit antibody PSD95 (Abcam, ab238135, Cambridge, UK, 1:200), rabbit antibody IBA1 (Fujifilm, 019-19741, Tokyo, Japan, 1:300)] at 4 °C, the sections were washed 3 times with PBS. A secondary antibody [goat anti-rabbit IgG H&L (Alexa Fluor® 488) (Abcam, ab150077, 1:500)] was then applied at room temperature for 1 h, and the slices were washed in PBS 3 times. Finally, the nuclei were restained with 1 μg/mL DAPI (Beyotime Biotechnology, C1002, Shanghai, China) for 10 min, and the slides were mounted with an anti-fluorescence quenching seal. The slides were viewed with a fluorescence microscope (BioTek, Cytation5, Hong Kong, China) and all images were collected using a microscopic imaging system (BioTek, Cytation5, Hong Kong, China). The ImageJ (v1.54f) application was used to analyze the collected images.
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