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56 protocols using 5α cholestane

1

Quantification of Serum, Hepatic, and Fecal Lipids

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Serum levels of total cholesterol and triglyceride were analyzed using the Cholesterol E-test Wako kit and Triglyceride E-test Wako kit, respectively (Wako Pure Chemical Industries, Ltd.).
Hepatic lipids were extracted with chloroform/methanol (2:1, v/v) according to the method of (Folch et al. 1957) . Extracted lipids were saponified in ethanolic KOH and nonsaponifiable lipids were extracted from the alkaline mixture with chloroform/methanol (2:1, v/v). Fecal steroids were extracted with hot ethanol. Quantification of hepatic cholesterol and fecal neutral D r a f t steroids was performed by gas chromatography (7890A instrument; Agilent Technologies, Santa Clara, CA, USA) using a HP-5 column (Agilent Technologies). 5α-Cholestane (Sigma-Aldrich) was used as an internal control. Fecal bile acids were analyzed using the Total Bile Acids Test Wako kit (Wako Pure Chemical Industries, Ltd.).
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2

Cholesterol Metabolism Pathway Assays

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Antibodies for flow cytometry were purchased from eBioscience. Antibodies for Western blot against Srebp1, Srebp2, LXRs, and Sumo1, -2, and -3 were purchased from Abcam, and other Western blot antibodies were purchased from Cell Signaling Technology. Cytokines were purchased from R&D Systems, and neutralization antibodies were purchased from Bio X Cell unless otherwise indicated. Cholesterol, 24(S)-hydroxycholesterol, 25-hydroxycholesterol, 7β-hydroxycholesterol, 20α-hydroxycholesterol, 3β-Hydroxy-5-cholesten-7-one, 22(R)-hydroxycholesterol, 22(S)-hydroxycholesterol, 5β-Cholestan-3β-ol, 5α-Cholest-7-en-3β-ol, 5,24-Cholestadien-3β-ol, 5-α-cholestane, β-cyclodextrin, simvastatin, lovastatin, and 2-D08 were purchased from Sigma-Aldrich. T0 and GW3965 were purchased from Cayman Chemical. Overexpression plasmids were purchased from Addgene unless otherwise indicated. All experiments were conducted according to the manufacturer’s protocols unless otherwise indicated.
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3

Comparative Analysis of Korean and Chinese Cultivars

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Korean perilla and sesame cultivars were grown at the National Institute of Crop Science, Rural Development Administration, Wanju-gun, Korea, during the 2018 growing season (June to November). Chinese perilla and sesame samples were procured from a local market in Xinzhou and JiangXia district (Wuhan city), China. The Chinese samples including perilla and sesame were from the recent harvests of November 2017 and 2016, respectively. Three biologic replicates were prepared for each sample. 5α-Cholestane, ribitol, pentadecanoic acid, fatty acid methyl ester (FAME) mixture, N-methyl-N-trimethylsilyl trifluoroacetamide (MSTFA) and pyridine were purchased from Sigma-Aldrich (St. Louis, Mo, USA). All other chemicals used in this study were reagent grade unless stated otherwise.
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4

Quantification of Oryzanol and Sterols

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All solvents and chemicals were of analytical grade or HPLC/GC grade and purchased from RCI Labscan (Bangkok, Thailand). The total γ-oryzanol (98.5%) standard was purchased from Tsuno Rice Fine Chemical Co., Ltd. (Wakayama, Japan). PC standards, including docosanol (C22), tetracosanol (C24), hexacosanol (C26), octacosanol (C28) and triacontanol (C30), and phytosterol standards, including campesterol, stigmasterol, β-sitosterol, sitostanol, and 5α-cholestane, were purchased from Sigma-Aldrich (St. Louis, MO, USA). N,O-bis(trimethylsilyl)-trifluoroacetamide (BSTFA) with 1% trimethylchlorosilane (TMCS) and pyrogallol were also purchased from Sigma-Aldrich (St. Louis, MO, USA).
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5

Quantification of Sterol Sulfates

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All consumables were from VWR (Ismaning, Germany). Derivatization reagents trifluoroacetic anhydride (TFAA), 1-(trimethylsilyl)imidazole (TSIM), and N-methyl-N-trimethylsilyltrifluoroacetamide (MSTFA) were from Macherey-Nagel (Düren, Germany). Deionized water was prepared with an in-house ion-exchanger. 1,4-Dioxane and methyl tert-butyl ether (MtBE) were distilled before use. β-Glucuronidase/sulfatase from Helix pomatia type HP-2, 5α-cholestane (≥97%), pregnenolone (>98%), pregnenolone sulfate sodium salt (>98%), and cholesteryl sulfate sodium salt (>99%) were purchased from Sigma-Aldrich (Schnelldorf, Germany). Dehydroepiandrosterone sulfate sodium salt (>99%) and 25-hydroxycholesteryl sulfate sodium salt (>99%) were from Avanti Polar Lipids (Alabaster, AL, USA). All other sterol sulfate sodium salts were from Steraloids (Newport, RI, USA). All other reagents and solvents were purchased in HPLC grade or in pro analysis quality from Sigma-Aldrich (Schnelldorf, Germany).
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6

Cholesterol Assimilation Assay Protocol

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A stock solution of cholesterol (Lipids Cholesterol Rich from adult bovine serum; Sigma-Aldrich, St. Louis, MO, USA) at 10 mg/mL was used to prepare cholesterol assimilation assays and to prepare a 6-point calibration curve as described in Section 2.3.6 [37 (link)]. A stock solution of 5-α-cholestane (Sigma-Aldrich, St. Louis, MO, USA) at 2.5 mg/mL was used as an internal standard in the lipid extractions.
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7

Virus Entry Assay Protocol

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HOS cells expressing CD4/CCR5 were acquired from the NIH AIDS Reagent Program from Dr. Nathaniel Landau. DNA sequences encoding BaL.01 Env and NL4-3 R E Luc+ core were also obtained from the NIH AIDS Reagent Program from Dr. John Mascola and Dr. Nathaniel Landau, respectively. The plasmid encoding JR-FL gp160 was a kind gift of Dr. Simon Cocklin, while the plasmid encoding YU2 gp160 was a kind gift of Drs. Alon Herschorn and Joseph Sodroski. Methyl β-cyclodextrin (MβCD), cholesterol, cholestanol (5α-cholestan-3β-ol), 7-dehydrocholesterol (3β-hydroxy-5,7-cholestadiene), coprostan-3-ol (5β-cholestan-3β-ol), cholestenone (3-oxo-4-cholestene), 5α-cholestane, dehydroergosterol (Ergosta-5,7,9(11),22-tetraen-3β-ol) and Triton X-100 were purchased from Sigma–Aldrich. Laurdan dye was purchased from Invitrogen. Rabbit and mouse anti-p24 and CD45 antibodies were purchased from Abcam. D7324 anti-gp120 antibody was purchased from Aalto.
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8

Lipid Analysis of Nutritional Formula

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Butylated hydroxytoluene (BHT), heptane (99.0 %), cholesterol standard (99.0 %), 5α-cholestane (100 %), N, N-dimethyl formamide (99.8 %), hexamethyldisilazane (99.99 %), and cholrotrimethylsilane (99.98 %) were purchased from Sigma–Aldrich Chemical Co. (St. Louis, MO). Potassium hydroxide (85.0 %) and pyrogallol were obtained from Daejung Chemicals & Metals Co. (Siheung-si, Korea) and Tokyo Chemical Industry Co. (Tokyo, Japan) respectively. All reagents used in this study were of GC grade. The National Institute of Standards and Technology (NIST, Gaithersburg, MD, USA) provided the standard reference material SRM-1849 (infant/adult nutritional formula) for this study.
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9

Metabolomic Analysis of Pigmented Rice

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The 16 cultivars of rice (Oryza sativa L.) analyzed in the present study were categorized as non-pigmented (white), black, or red, in accordance with their pericarp color (Figure S3), as follows: WR: Purple check (PC), Dongjin (DJ), and Heugdaegu (HDG); BR: Heughyang (HH), Heugjinju (HJJ), Heugnam (HN), Josengheugchal (JSHC), Maligate Pirurutong (MP), Suwon 493 (SW 493), and Suwon 505 (SW 505); RR: Aengmi (AM), Goryeong 8 (GR8), Hongjinju (HoJJ), Hanyangjo (HYJ), Siga-Chata (SC), and Jagwangdo (JGD). The rice samples were obtained from the Agricultural Genetic Resources Center at the National Academy of Agricultural Science (Suwon, Korea). The seeds were harvested in 2016 and the rice samples were manually hulled. The samples were pulverized on the same day using a mortar and a pestle. The rice powder was stored in a refrigerator at −20 °C prior to analysis. Pyridine, N-methyl-N-(trimethylsilyl) trifluoroacetamide (MSTFA), methoxyamine hydrochloride, ribitol, 5α-cholestane, and fatty acid methyl ester (FAME) mixture (C8–C24) were obtained from Sigma-Aldrich Corp. (St. Louis, MO, USA). Peonidin-3-O-glucoside and cyanidin-3-O-glucoside were purchased from Extrasynthese (Genay, France). All chemicals and reagents used in the study were HPLC grade.
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10

Pumpkin Seed Oil Extraction and Characterization

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Pumpkin seeds with husks, harvested at the commercial maturity stage, were obtained from Powdery Health Industry Co., Ltd., Jinmen, China) and used as the raw material for PSO extraction. Standards of fatty acid esters, triacylglycerol; α-, β-, γ- and δ-tocopherols (purity > 95%); squalene; 5α-cholestane; campesterol; stigmasterol; β-sitosterol; Bis(trimethylsilyl)trifluoroacetamide (BSTFA) + Trimethylchlorosilane (TMCS); DPPH, 2,4,6-Tris (2-pyridyl)-s-triazine (TPTZ); ABTS; and fluorescein sodium salt were purchased from Sigma-Aldrich Chemical Co., Ltd. (Shanghai, China). The 6-Hydroxy-2,5,7,8-tetramethylchroman-2-carboxylic acid (Trolox) was obtained from TCI Development Co., Ltd. (Shanghai, China). All other chemicals were of analytical grade and were purchased from Sinopharm Chemical Regent (Shanghai, China).
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