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Sybr green premix pcr kit

Manufactured by Takara Bio
Sourced in United States

The SYBR green premix PCR kit is a ready-to-use solution designed for real-time quantitative PCR (qPCR) analysis. It contains a SYBR green dye, DNA polymerase, and necessary reagents for efficient amplification and detection of target DNA sequences.

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7 protocols using sybr green premix pcr kit

1

Quantifying Damselfish Gene Expression

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Primers for the experiments were produced by FSHβ and LHβ of damselfishC. notata that are listed on NCBI. A qPCR was conducted with 20 ng
of cDNA using SYBR green premix PCR kit (Takara) in CFX96TM Real-time
System (Bio-Rad, Hercules, CA, USA). PCR was performed at 95℃ after the initial
denaturation. Afterwards, the PCR reaction was performed by 40 cycle of
denaturation for 45 s at 94℃, annealing for 45 s at 58℃, and extension for 1 min
at 72℃. Expression of the FSHβ and LHβ genes in each sample was normalized to
the amount of the internal control β-actin gene.
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2

Quantitative Expression Analysis of Crucial Genes in Paralichthyidae

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Primers for the experiments were produced by Kiss2, sbGnRH, FSH-β, LH-β, and GH genes of P. olivaceus that are listed on NCBI databse (Table 1). A qPCR was con-ducted with 20 ng of cDNA using SYBR green premix PCR kit (TaKaRa-Bio) in CFX96™ Real-time System (Bio-Rad, Hercules, CA). PCR was performed at 95°C after the initial denaturation. Afterwards, the PCR reaction was per-formed by 40 cycle of denaturation for 45 s at 94°C, annealing for 45 s at 58°C, and extension for 1 min at 72°C. Expression of the Kiss2, sbGnRH, FSH-β, LH-β and GH genes in each sample was normalized to the amount of the internal control EF1-α gene.
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3

Quantifying Igf and Vtg mRNA Levels

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The mRNA abundance of sapphire devil igf1 and igf2 in the liver and brain and sapphire devil vtg (GenBank accession no. LC383743) in the liver was assayed using the CFX96 real-time PCR detection system (Bio-Rad Laboratories, Hercules, CA, USA) and an SYBR Green premix PCR kit (Takara Bio). Primer sets for detecting target genes are shown in Table 1.
Each PCR was carried out in a final volume of 10 µL containing 5 µL SYBR Premix Ex Taq II (Tli RNaseH Plus) (Takara Bio), 0.3 µL forward and reverse primers, 2.4 µL nuclease free water, and 2 µL cDNA template. The PCR conditions were as follows: denaturation (30 s at 95°C), 39 cycles of denaturation (5 s at 95°C), and annealing and extension (30 s at 60°C), which had a melting point from 65 to 95°C with an incremental increase of 0.5°C each 5 s. A melting curve analysis was performed subsequently to ensure single amplicon amplification.
The specific primer assays were performed using serial dilutions of liver cDNA and exhibited amplification efficiencies close to 100%. The mRNA abundance of target genes in each sample was normalized to the amount of ef1α as an internal control.
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4

Quantitative Real-Time PCR Protocol

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Primer sets used in RT-PCR and qPCR are shown in Table 1. RT-PCR was performed using Go Taq Green master mix (Promega) according to the manufacturer's protocol. PCR reactions were performed as follows: 28 cycles of denaturation for 45 s at 94°C, annealing for 45 s at 58°C, and extension for 1 min at 72°C. Then the reaction mixture was electrophoresed on 2% agarose gels with ethidium bromide. We performed qPCR using the SYBR Green premix PCR kit (TaKaRa Bio). Each PCR reaction mix contained 50% SYBR Premix Ex Taq, 10 μM of each primer, and 20 ng cDNA template. The qPCR reactions were run on the CFX96 TM Real Time System (Bio-Rad, Hercules, CA, USA). The cycling conditions comprised initial denaturation at 95°C at 1 min, followed by 40 cycles of denaturation for 5 s at 95°C, and annealing and extension for 1 min at 60°C. To ensure specificity, melting curve analyses were performed by slowly raising the temperature of the sample from 60°C to 95°C. Temperature curves showed a single amplified product with complete absence of primer-dimer formation. The Gene study tools software (Bio-Rad) was used to determine a normalizing factor from β-actin as the internal reference gene, which was used to calculate normalized expression for the target genes.
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5

Quantitative RT-PCR Analysis of Immune Genes

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Eastep Super (Shanghai Promega) was used to isolate total RNA from ten third instar larvae of indicated genotypes, and qRT-PCR was performed using SYBR Green PCR Premix Kit (TaKaRa). Primers used were as follows:
For rp49 FP: TCTCCTTGCGCTTCTTGGA
RP: TACAGGCCCAAGATCGTGAA
For dl FP: ATCCGTGTGGATCCGTTTAA
RP: AATCGCACCGAATTCAGATC
For cactus FP: CTCACTAGCCACTAGCGGTAA
RP: CCCGAATCACTGGTTTCGTTT
For Toll FP: AATCCCACGTTTAGGCTAACCA
RP: CCTCACCGATCCGCAACTT
For gstD1 FP: CGCGCCATCCAGGTGTATTT
RP: CTGGTACAGCGTTCCCATGT
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6

Optimized RNAi-Knockdown Efficiency Assay

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For RNAi-knockdown efficiency experiments, hs-Gal4 driver was used. Animals were raised at 25 °C, heat-shocked at 37 °C for 30 min, and recovered at 29 °C for 2 h before dissection.
Eastep Super (Shanghai Promega) was used to isolate total RNA from third instar larvae of indicated genotypes, and RT-qPCR was performed using SYBR Green PCR Premix Kit (TaKaRa). Primers used were as follows:
rp49 FP: CCACCAGTCGGATCGATATGC.
rp49 RP: CTCTTGAGAACGCAGGCGACC.
slik FP: TAGGACAGCAGCAATGAGCTGG.
slik RP: TTCACGTAGCTCCTGCTTACGG.
STK10 FP: ATCCTGCGCCTGTCTACCTT.
STK10 RP: GCCTTGTAAACCTTGCCGAA.
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7

Quantitative RT-PCR for Drosophila Larval Genes

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Total RNAs were extracted from fifteen third instar larval tissues of indicated genotypes with Trizol (Ambion, Life Technologies, Carlsbad, CA, USA) following the protocol of RNA preparation kit, and quantitative polymerase chain reaction (qPCR) was performed using SYBR Green PCR Premix Kit (TaKaRa). The primers used are as follow:
GeneForward primerReverse primer
rp49TCTCCTTGCGCTTCTTGGATACAGGCCCAAGATCGTGAA
dGLYATATACCATTAAGGGAACCCCAGATGACCCAAATTCAGCCAATATGC
Gadd45ATCGGACGCACCATCAAGTCTGTCGTTCTCGTAGCAAAAGG
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