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Lipopolysaccharide lps rough strains from escherichia coli f583 rd mutant

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Lipopolysaccharide (LPS) (rough strains) from Escherichia coli F583 (Rd mutant) is a bacterial cell wall component. It is used for research purposes in various scientific fields.

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5 protocols using lipopolysaccharide lps rough strains from escherichia coli f583 rd mutant

1

Elderberry Genotypes Comparison

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Elderberries from 8 genotypes including ‘Bob Gordon’, ‘Dallas’, ‘Ocoee’, ‘Ozone’, ‘Sperandio’, ‘Wyldewood’, ‘York’ (S. nigra subsp. canadensis) and ‘Marge’ (S. nigra subsp. nigra) were harvested at the same location of Mt. Vernon (MO, USA) in 2011. Fruit production details are described in Thomas et al. (2015) . Berries were immediately frozen upon harvest, and later were thawed, de-stemmed, French-pressed, and the juices centrifuged, filtered, lyophilized, and dissolved in DMSO. Dulbecco’s modified Eagle’s medium (DMEM), penicillin, streptomycin, 0.05% (w/v) trypsin/EDTA, and phosphate-buffered saline (PBS) were obtained from GIBCO (Gaithersburg, MD, USA). Interferon-γ (IFNγ) was purchased from R & D Systems (Minneapolis, MN, USA). Lipopolysaccharide (LPS) (rough strains) from Escherichia coli F583 (Rd mutant) was obtained from Sigma-Aldrich (St. Louis, MO, USA). Fetal bovine serum was from Atlanta Biologicals (Lawrenceville, GA, USA).
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2

Molecular Signaling Pathway Analysis in Cells

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Dulbecco's modified Eagle's medium (DMEM), penicillin, streptomycin, 0.05% (w/v) trypsin/EDTA and phosphate-buffered saline (PBS) were obtained from GIBCO-BRL (Gaithersburg, MD, USA). Fetal bovine serum was from Atlanta Biologicals (Lawrenceville, GA, USA). Cytokines (TNFα, IL-1β and IFNγ) were purchased from R & D Systems (Minneapolis, MN, USA). Lipopolysaccharide (LPS) (rough strains) from Escherichia coli F583 (Rd mutant) was purchased from Sigma-Aldrich (St. Louis, MO, USA). Premixed WST-1 cell proliferation reagent was obtained from Clontech (Mountain View, CA). BCA protein assay kit was from Pierce Biotechnology (Rockford, IL). Reporter Lysis Buffer (E397A) and Firefly luciferase kits (PR-E4030 or PR-E2610) were from Promega (Madison, WI). Antibodies for Western blot analysis: goat anti-rabbit IgG-horseradish peroxidase (HRP), goat anti-mouse IgG-HRP, rabbit polyclonal anti-Nrf2 (C20, sc-722) and rabbit polyclonal anti-HO-1 (H-105, sc-10789), were obtained from Santa Cruz Biotechnology (Santa Cruz, CA). Mouse monoclonal anti-β-actin (sc-2004) was from Sigma-Aldrich (St. Louis, MO). Precision Plus Protein molecular weight standards were obtained from (Bio-Rad, Hercules, CA).
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3

Antioxidant Pathways Regulation by LPS

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Lipopolysaccharide (LPS) (rough strains) from Escherichia coli F583 (Rd mutant) and fetal bovine serum (FBS) were obtained from Sigma-Aldrich (St. Louis, MO). FBS (lot no. 12J002) was qualified USA origin, sterile, filtered and cell culture tested, and certified to contain endotoxin levels less than 1.0 ng/ml. Dulbecco's modified Eagle's medium (DMEM), penicillin, streptomycin, 0.05% (w/v) trypsin/EDTA, and phosphate-buffered saline (PBS) were obtained from GIBCO (Gaithersburg, MD). Tin Protoporphyrin IX dichloride (TinPPIX) was from Santa Cruz Biotechnology (Santa Cruz, CA). Kinase inhibitors (U0126 and SB202190) were from Cell Signaling (Beverly, MA).
Antibodies used for Western blots include: goat anti-rabbit IgG-horseradish peroxidase, goat anti-mouse IgG-horseradish peroxidase, rabbit polyclonal anti-Nrf2, and anti-HO-1 (Santa Cruz Biotechnology, Santa Cruz, CA); mouse monoclonal anti-β-actin (Sigma-Aldrich, St. Louis, MO); rabbit polyclonal anti-ERK1/2, mouse monoclonal anti-phospho-ERK1/2, rabbit monoclonal anti-p38MAPK, and anti-phospho-p38MAPK (Cell Signaling, Beverly, MA). Quercetin (Sigma-Aldrich, St. Louis, MO) and cyanidin chloride (Indofine Chemical Comp., Hillsborough, NJ) were dissolved in DMSO as a stock solution.
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4

Macrophage Inflammatory Response Assay

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Dulbecco’s modified Eagle’s medium (DMEM), penicillin, streptomycin, 0.05% (w/v) trypsin/EDTA, and phosphate-buffered saline (PBS) were obtained from GIBCO (Gaithersburg, MD). Interferon-γ (IFNγ) was purchased from R & D Systems (Minneapolis, MN). Lipopolysaccharide (LPS) (rough strains) from Escherichia coli F583 (Rd mutant) and methylthiazolyldiphenyl-tetrazolium bromide (MTT) were from Sigma-Aldrich (St. Louis, MO). WST-1 kit for assay of cell viability was obtained from Clontech (Mountain View, CA). Fetal bovine serum was from Atlanta Biologicals (Lawrenceville, GA). Antibodies used for Western blots include: goat anti-rabbit IgG- horseradish peroxidase, goat anti-mouse IgG- horseradish peroxidase and anti-iNOS rabbit polyclonal (Santa Cruz Biotechnology, Santa Cruz, CA); monoclonal anti-β-actin peroxidase (Sigma-Aldrich, St. Louis, MO); STAT1α rabbit polyclonal antibody (Millipore, Billerica, MA), rabbit polyclonal p-STAT1 pSer727 (Pierce Biotechnology, Rockford, IL), rabbit polyclonal anti-ERK1/2, and mouse monoclonal anti-phospho-ERK1/2, (Cell Signaling, Beverly, MA). For ROS detection, CM-H2DCF-DA (DCF) was obtained from Invitrogen, Inc. (Eugene, OR), and dihydroethidium (DHE) from Sigma-Aldrich (St. Louis, MO).
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5

Inflammatory Response Modulators in Cell Culture

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Quercetin, rutin (Sigma-Aldrich, St. Louis, MO), cyanidin 3-O-glucoside and cyanidin chloride (Indofine Chemical Comp., Hillsborough, NJ) were dissolved in DMSO as a stock solution. Dulbecco's modified Eagle's medium (DMEM), penicillin, streptomycin, 0.05% (w/v) trypsin/EDTA, and phosphate-buffered saline (PBS) were obtained from GIBCO (Gaithersburg, MD). Lipopolysaccharide (LPS) (rough strains) from Escherichia coli F583 (Rd mutant) was obtained from Sigma-Aldrich (St. Louis, MO). Murine interferon-γ (IFNγ) was purchased from R & D Systems (Minneapolis, MN). Fetal bovine serum was from Atlanta Biologicals (Lawrenceville, GA).
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