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68 protocols using triiodothyronine t3

1

Rat DRG Neurite Outgrowth Assay

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Similar to OPCs in mice, DRGs were also difficult to prepare, so we have to resort to their rat counterpart as substitutes. DRGs were isolated from E15 Sprague-Dawley rat embryos as previously described (Dadsetan et al., 2009 (link)), and cultured for neurite outgrowth as described by Dincman et al. (2012) (link). OPCs/DRGs co-cultures were maintained 8–12 days in OPC basal media supplemented with 30 ng/ml Triiodothyronine (T3; Sigma), and fixed for immunostaining with anti-MBP and anti-neurofilament (axons) antibodies.
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2

Isolation and Differentiation of Oligodendrocyte Progenitors

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After microglia removal, OPCs growing on top of astrocyte monolayer were isolated by shaking cells on an orbital shaker at 200 rpm for 3 h and incubated on an uncoated Petri dish for 1 h to further eliminate microglia. Pure OPCs (> 95% [32 (link)] were seeded onto poly-d,l-ornithine-coated glass coverslips or plates (50 μg ml−1, Sigma-Aldrich, Milan, Italy) in Neurobasal (Life Technologies, Monza, Italy) supplemented with 2% B27 (Life Technologies, Monza, Italy), 2 mM l-glutamine (EuroClone, Milan, Italy), 10 ng ml−1 human platelet-derived growth factor BB (Sigma-Aldrich, Milan, Italy), and 10 ng ml−1 human basic fibroblast growth factor (Space Import Export, Milan, Italy), to promote proliferation (proliferating medium). After 3 days, cells were either detached with accutase (Millipore, Burlington, MA, USA) and used for migration assay, or switched to a Neurobasal medium lacking growth factors and supplemented with triiodothyronine T3 (10 ng ml−1, Sigma Aldrich, Milan, Italy) to allow differentiation (differentiating medium).
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3

Isolation and Purification of Mouse OPCs

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Isolation and purification of mouse OPCs was performed according to previously described immunopanning protocols using an anti-Pdgfra (CD140a) antibody for positive selection of OPCs (Shiow et al., 2017 (link); Yuen et al., 2014 (link); Dugas and Emery, 2013 (link)). Briefly, OPCs were immunopanned from P7-P9 mouse cortices and plated on poly-D-lysine coverslips (Neuvitro). Cells were kept in proliferation media (PDGF-AA, CNTF, and NT3; Peprotech) at 10% CO2 and 37°C. After two days in proliferation media, differentiation was induced by changing media to contain CNTF and triiodothyronine (T3; Sigma). Note that mycoplasma contamination testing was negative.
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4

Primary Neuron Culture Protocol

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Primary Neuron Basal Medium (PNBM) and all supplements were purchased from Lonza (Walkersville, MD, USA). Triiodothyronine (T3) and bicuculline were purchased from Sigma Aldrich (St. Louis, MO, USA).
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5

Chondrogenic Differentiation of MSCs

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MSCs were trypsinized and seeded in V-bottomed 96-well polypropylene plates at 200,000 cells per well. Pellets were formed by centrifugation at 250 g for 5 min and chondrogenically differentiated in DMEM with high glucose (Invitrogen), 1% ITS (Sigma Aldrich), 50 μg/ml ascorbate-2-phosphate (Sigma Aldrich), 40 μg/ml L-proline (Sigma Aldrich), 100 nM dexamethasone (Sigma Aldrich), 1 mM sodium pyruvat (Invitrogen) and 10 ng/ml TGFβ1 (R&D Systems).
After a pre-differentiation period of 14 days, medium conditions were changed to hypertrophy enhancing medium (hyp) consisting of DMEM high glucose, 1% ITS, 50 g/ml ascorbate-2-phosphate, 40 g/ml L-proline, 1 nM triiodothyronine (T3) (Sigma Aldrich) and the control was kept in chondrogenic medium (chon) for the whole culture period. The medium was changed three times per week.
Aggregates were harvested at d1, d3, d7, d14, d17, d21 and d28 for gene expression analysis. Aggregates for histological analysis were harvested on d14 and d28.
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6

Derivation and Differentiation of Oligodendrocyte Progenitor Cells

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Derivation of NPCs was performed as described [30 (link), 60 (link)] (also described in Supplementary Methods). Briefly, NPCs were cultured in suspension as neurospheres in Advanced DMEM/F12 containing: 1% N-2 supplement, 1% B27 supplement, 1% Anti-anti, 1% GlutaMAX (all from Life Technologies), FGF2 20 ng/ml (PeproTech), PDGFα 20 ng/ml (PeproTech), purmorphamine 1 μM (Calbiochem), SAG 1 μM (Calbiochem), IGF-1 10 ng/ml (PeproTech), and Tri-iodothyronine (T3) 30 ng/ml (Sigma) for 6–12 weeks. Following papain dissociation of neurospheres (Worthington), cells were plated on 1/100 diluted Matrigel (BD Biosciences), 20 µg/ml Fibronectin (Sigma), and 10 µg/ml Laminin (Sigma) coated coverslips or plates at a density of 20,000–30,000 cells per 0.3 cm2. Differentiation of oligodendrocytes was achieved by mitogen withdrawal (except for T3 and IGF-1).
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7

Differentiation of Preadipocytes into Mature Adipocytes

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Preadipocytes were cultured and differentiated as reported before [22 (link)]. Preadipocytes from passage 1 were thawed at 37°C and expanded into a T-75 flask using preadipocytes medium. Upon reaching 70% confluence, the cells were trypsinized and seeded again into a 12 well plate at density 15,000 cells/cm (passage 2) using preadipocytes media. After reaching confluence, adipogenesis was induced by adding a differentiation cocktail DMEM-F12, 1% PEST, 100 nM insulin, 17 µM pantothenate (Sigma), 33 µM biotin (Sigma), 1 µM dexamethasone (Sigma), 1 µM rosiglitazone (Sigma), 250 µM 3-isobutyl-1-methylxanthine (IBMX, Sigma), 10 µg/ml transferrin (Sigma), 2 nM triiodothyronine (T3, Sigma) for 5 days, changing the medium on day 3. The differentiation continued using maintenance media (composition as that of differentiation cocktail except for omitting IBMX) for 14 days to obtain mature adipocytes. Medium was replenished every 2–3 days. CABLES1 gene expression was measured in cells collected upon confluence (day 0) and days 2, 4, 8 and 14 post induction for temporal profiling, or, for gene editing experiments (see below), on days 0, 7 and 14 for gene edited cells.
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8

Engineered Human Skin Equivalents

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HSE was constructed according to our previous study with some modification [16 (link)]. Briefly, adult fibroblasts and keratinocytes were isolated from discarded skin (under patients’ consent and approved by the Monash Ethics Committee). Fibroblasts were expanded in single layer dermal templates, Integra® and BTM (with no sealing film), in DMEM with bovine calf serum (10%, Sigma, St. Louis, MI, USA) and gentamicin (50 µg/mL, Life Technologies, Carlsbad, CA, USA) 4–7 days. Dermal templates were soaked in human plasma (20–25 mg/mL) and CaCl2 (1%) for 30 min at 37 °C prior to seeding keratinocytes. The HSEs were allowed to expand and stratify in Green’s media: DMEM: F12 media (3:1) (Life Technologies, Carlsbad, CA, USA) supplemented with L-glutamine (4 mM, Life Technologies, Carlsbad, CA, USA), adenine (0.18 mM, Calbiochem, San Diego, CA, USA), hydrocortisone (0.4 ug/mL, Calbiochem, San Diego, CA, USA), triiodothyronine (T3)( 2 × 10−9 M, Sigma), insulin (5 ug/mL, Sigma, St. Louis, MI, USA), transferrin (TRF) (5 ug/mL, Sigma, St. Louis, MI, USA), Epidermal Growth Factor (EGF) (10 ng/mL, R&D Systems, Minneapolis, MI, USA), foetal calf serum (10%, Thermo Fisher Scientific, Waltham, MA, USA), and gentamicin (50 µg/mL, Life Technologies, Carlsbad, CA, USA) 10 to 14 days prior to grafting (n = 5–6 mice per group).
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9

Oligodendrocyte Progenitor Cell Culture

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Media (DMEM/F12, MEM, Neurobasal medium), GlutaMAXTM, StemPro® NSC SFM, B27 supplement, N2 supplement, poly-L-ornithine (PLO), and Lipofectamine 2000 were purchased from Invitrogen. Horse serum (HS) was obtained from HyClone Laboratories. Apotransferrin, biotin, bovine serum albumin (BSA), 5-bromo-2′-deoxyuridine (BrdU), cytosine arabinoside (Ara-C), diethylpyrocarbonate (DEPC), hydrocortisone, insulin, N-acetyl-cysteine (NAC), poly-D-lysine (PDL), sodium ampicillin, sodium pyruvate, sodium selenite, triiodothyronine (T3), and lysolecithin were obtained from Sigma. Ciliary neurotrophic factor (CNTF), epidermal growth factor (EGF), fibroblast growth factor-2 (FGF-2), and platelet derived growth factor-AA (PDGF-AA) were obtained from ProSpec. The antibodies used in this study are listed in Table 1.
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10

Isolation and Expansion of Human Renal Epithelial Cells

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Primary human renal epithelial cells (REC) were isolated from human kidneys unsuitable for transplantation due to anatomic or fibrotic defects (procured from the National Disease Research Interchange, NDRI), following an established method.10 (link) For all tissues used, provided by NDRI, written informed consent was obtained according to Institutional Review Board (IRB) #5 at the University of Pennsylvania. Cells were cultured in Ultra MDCK media (Lonza, Walkersville, MD) supplemented with 1/2× the manufacturer’s recommended dilution for insulin, transferrin, ethanolamine and selenium supplement (ITES, Lonza), 60ng/mL epidermal growth factor (EGF, #E1257 Sigma-Aldrich; St. Louis, MO), 10−9M triiodothyronine (T3, #T6397, Sigma-Aldrich, St Louis, MO) and antibiotic-antimycotic (15240-062, Invitrogen, Carlsbad, CA). Cells were passaged upon 70–80% confluence, and either seeded on carbon disks or frozen for future seeding. This process called expanded propagation (EP) was carried out using a recently developed culture system10 (link).
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