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Any kd tgx gels

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Any kD TGX gels are polyacrylamide gels designed for protein separation and analysis. They feature a unique gel formulation that allows for the separation of proteins across a wide range of molecular weights in a single lane. The gels are pre-cast and ready-to-use, providing a convenient and consistent solution for protein electrophoresis.

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6 protocols using any kd tgx gels

1

Insulin Signaling Pathway Analysis

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Human insulin (Humulin R) was purchased from Eli Lily. FITC-insulin was purchased from Sigma-Aldrich. Vectastain Universal Elite ABC kit, Carbo-Free blocking solution, and DyLight 649-tomato lectin were purchased from Vector Laboratories. Bovine serum albumin (BSA) was purchased from Rockland Immunochemicals. Phospho-insulin receptor beta (Y1185) antibody was purchased from Bioss (#bs-5453R). Rabbit anti-insulin antibody and horseradish peroxidase conjugated anti-rabbit IgG antibody was purchased from Cell Signaling Technology. Neuro-Chrom pan-neuronal antibody was purchased from Millipore (#ABN2300). Phosphatase inhibitor cocktail was purchased from Research Products International. Complete mini protease inhibitor cocktail was purchased from Roche. SuperBlock blocking buffer, 4,6-diamidino-2-phenylindole (DAPI), IP lysis buffer, ProLong Diamond, and Alexa Fluor 568 goat anti-mouse antibody were purchased from Thermo Fisher. Any KD TGX gels, XT sample buffer, reducing agent, and Clarity Western ECL reagent were purchased from Bio-Rad. All other reagents were purchased from Sigma-Aldrich unless noted.
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2

SDS-PAGE Analysis of Mustard Seed Proteins

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Mustard seed extracts normalized to equal amounts of protein (10 µg) were subjected to SDS-PAGE under reducing and non-reducing conditions using pre-cast Any KD TGX gels (Bio-Rad Laboratories, Hercules, CA, USA) according to Laemmli [26 (link)]. The soluble extracts were mixed with an equal volume of Laemmli sample buffer with 5% (v/v) of β-mercaptoethanol (β-ME) and boiled for 5 min. Alternatively, electrophoresis was performed under non-reducing conditions by omitting the addition of β-ME. The gels were run at a constant voltage of 150 V for 90 min using TGS buffer (25 mM Tris, 192 mM glycine, and 0.1% SDS) in a Criterion cell (Bio-Rad). A molecular weight standard (Precision Plus Protein Standard) was included on each gel. After electrophoresis, gels were stained with Coomassie Brilliant Blue. Images were acquired by scanning stained gels using an Image Scanner III (GE Healthcare, Salt Lake City, UT, USA) operated by LabScan 6.0 software (GE Healtcare). For image and densitometry analysis, the Image Quant TL 7.0 Software (GE Healtcare) was used.
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3

Western Blotting of Purified Proteins

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Purified proteins were mixed with SDS-PAGE loading buffer (with or without DTT), boiled for 5 min, and separated on anykD™ TGX™ gels (BioRad). After transfer to nitrocellulose, blots were blocked with 5% nonfat dry milk (BioRad) in PBS containing 0.05% Tween-20 (PBST) and incubated with antibodies overnight at 4 °C. After incubation with horseradish peroxidase (HRP)-conjugated secondary antibody, blots were developed using SuperSignal West Pico Chemiluminescent Substrate (Thermo Scientific). Blotting of P. falciparum gametes and gametocyte extracts was identical except that blots were blocked and antibodies were diluted in PBST containing 2% BSA.
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4

Analyzing Lm-γ2 Fragments in Cancer Cells

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To analyze Lm‐γ2 fragments produced by cultured human cancer cell lines, conditioned medium was collected from confluent culture of each cell line after 2 days of incubation in serum‐free medium, and treated with 10% (w/v) trichloroacetic acid to precipitate protein. The protein obtained from 1 mL conditioned medium was applied to SDS‐PAGE. To analyze γ2 fragments produced in cancer tissues, two serial frozen sections with an approximate size of 5 × 5 × 0.005 mm were combined and extracted with 100 μL lysis buffer containing 20 mM Tris‐HCl (pH 7.5), 1% (v/v) Triton X‐100, 1 mM EDTA, and protease inhibitors and centrifuged at 21 500 × g for 10 min. Protein in the resultant supernatant was precipitated with 4 volumes of cold acetone and dissolved in 50 μL SDS sample buffer (soluble fraction), while the precipitate was again extracted with 50 μL SDS sample buffer (insoluble fraction). Twenty microliters of each fraction was applied to SDS‐PAGE. The electrophoresis was carried out on Any kD TGX gels (Bio‐Rad, Hercules, CA, USA) under reducing conditions. For immunoblotting, proteins separated by SDS‐PAGE were transferred onto PVDF membranes, probed with indicated antibodies, and visualized by the ECL method (GE Healthcare, Little Chalfont, UK).
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5

Western Blot Analysis of Virus Proteins

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Samples in SDS Laemmli buffer were run on reducing SDS PAGE, either 10% Tris-glycine or Any kD TGX gels (Bio-Rad). Upon transfer to low fluorescence PVDF (Immobilon-FL, Millipore; or Immun-Blot LF, Bio-Rad), the membranes were incubated in Odyssey blocking buffer (Li-Cor Biosciences), then incubated with primary antibodies, followed by fluorescent secondary antibodies. For imaging on a Li-Cor Odyssey imaging system, the secondary antibodies were goat IRDye 800CW or 680LT antibodies (Li-Cor Biosciences). For imaging on a Bio-Rad ChemiDoc MP imaging system, the secondary antibodies were goat Alexa Fluor 647 or 546 antibodies (Invitrogen). The following primary antibodies were used: rabbit anti-NiV-M [50 (link)], rabbit anti-NiV-C (produced by 21st Century Biochemicals from rabbits immunized with a purified peptide corresponding to amino acids 13–31 of NiV-C), rabbit anti-HA (Novus, NB600-363), rabbit anti-COX IV (Li-cor Biosciences, 926–42214), mouse anti-Tsg101 clone 4A10 (Genetex, GTX70255), and mouse anti-FLAG clone M2 (Sigma, F3165).
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6

Quantifying AU-011 Protein Levels

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Briefly, samples to be analyzed were first prepared with 4× denaturation buffer (250 mmol/L Tris–HCl pH 6.8, 8% SDS, 5% 2-mercaptoethanol). A standard curve of AU-011 was also prepared by dilution of stock AU-011 in the same matrix as the samples to a high concentration of 625 ng/mL. Standards were prepared through 1:1 serial dilutions of the high concentration standard and then prepared in denaturation buffer in a manner identical to the test samples. Standards and samples were heated to 95°C for 5 minutes and then assayed by SDS-PAGE or dot blot. For dot blot analysis, samples were applied to a nitrocellulose membrane that had been assembled within a 96-well vacuum manifold. Following the application of the samples, the wells of the vacuum manifold were washed twice with PBS. The membrane was then removed from the apparatus and imaged on an Odyssey CLx gel imager (LI-COR Biosciences) to detect the fluorescence of IR700, the conjugate in AU-011. Estimates of AU-011 levels in tissue samples were generated by comparing the fluorescence intensity of the sample to the standard curve. For SDS-PAGE analysis, samples were run on Any kD TGX gels (Bio-Rad) with the gel similarly imaged and analyzed as described above.
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