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9 protocols using anti psrc y416

1

Investigating SYK and NF-κB Signaling

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Unless stated otherwise, all chemicals were purchased from MilliporeSigma. Antibodies were obtained from the following sources: anti–p-Tyr (catalog 9411), anti–p-SRC (Y416) (catalog 2101), anti-SRC (catalog 2109), anti–p-SYK (Y525/526) (catalog 2710), anti-SYK (catalog 2712), anti–p-IκBα (catalog 2859), anti-IκBα (catalog 9242), anti-GAPDH (catalog 2118), anti-TLR2 (catalog 12276 for human and 13744 for mouse), anti–NF-κB (catalog 3033), and anti–NF-κB (catalog 8242) from Cell Signaling Technology; anti-MyD88 (catalog SAB3500472) and anti-FLAG M2 (catalog F3165) from MilliporeSigma; anti-Myc (catalog sc-40) and anti-actin (catalog sc-47778) from Santa Cruz Biotechnology; anti-HA (M180-3) from MBL International; anti–p-Tyr (4G10) (catalog 05-321) from Millipore; anti-PPP1R11 (ab171960) from Abcam; and anti-3BP2 (catalog H00006452-M01) from Abnova. Halt Protease and Phosphatase Inhibitor Cocktail was from Thermo Fisher Scientific. SYK inhibitor was from Millipore. PP2 and BMS 345541 were from Selleckchem.
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2

Antibody Profiling for Focal Adhesion

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Antibodies used were as follows: anti-Paxillin (RRID:AB_647289), anti-GM130 (RRID:AB_398141), anti-p130Cas (RRID:AB_397667) and anti-RACK1 (RRID:AB_397577) antibodies (BD Transduction Laboratories, New Jersey, USA), anti-IFITM3 (RRID:AB_2122095) (Abcam, Cambridge, UK), anti-CoxIV (RRID:AB_10694213), anti-FAK (RRID:AB_10694068), anti-pFAK Y397 (RRID:AB_2173659), anti-pPaxillin Y118 (RRID:AB_2174466), anti-Rab7 (RRID:AB_1904103), anti-pSrc Y416 (RRID:AB_331697), anti-Src (clone 36D10) (RRID:AB_10693939), anti-LC3B (RRID:AB_2137707) and anti-GAPDH (RRID:AB_10622025) (Cell Signaling Technologies, Danvers, MA, USA), and anti-Dctn1 (RRID:AB_10842517), anti-Ambra1 (RRID:AB_2636939) and anti-pSrc Y416 (RRID:AB_309898) antibodies and anti-FAK (clone 4.47)-conjugated agarose antibody (RRID:AB_310789) (Millipore, Billerica, MA, USA). LC3B antibody was from MBL (RRID:AB_1279144) (MBL International, Woburn, MA, USA). TRITC-phalloidin was purchased from Life Technologies (RRID:AB_2572408) (Paisley, UK). Anti-rabbit (RRID:AB_2099233) or mouse (RRID:AB_330924) peroxidase-conjugated secondary antibodies were purchased from Cell Signaling Technologies. Dasatinib was obtained from Bristol Myers Squibb (Princeton, NJ, USA) and PF562271 from Pfizer (Groton, CT, USA).
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3

Immunoblot Analysis of Signaling Pathways

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Immunoblot analyses were performed according to widely established protocols. The following kits and antibodies were used: mTor Substrates Antibody Sampler Kit©, Phospho-Akt Pathway Antibody Sampler Kit©, anti-pSTAT5-Y694, anti-pABL1-Y245 and Y412, anti-pSRC-Y416, anti-SRC, and anti-pLCK-Y505 (all from Cell Signaling). Anti-ABL1, anti-STAT5 (Santa Cruz Biotechnology); anti-pLYN-Y396 (Abcam), anti-LYN (BD Biosciences), anti-α-Tubulin (Lab Vision). Blocking and antibody incubation were performed in 5% low-fat dry milk (Carl Roth). Washing was performed in Tris-buffered saline containing 0.1% Tween20 (TBS-T) followed by incubations either with secondary Ab coupled with horseradish-peroxidase for staining with enhanced chemiluminiscence substrate or the IRDye R© 800 and 680 goat anti rabbit or anti mouse ABs (LI-COR Biosciences). Blots were “stripped” using RestoreWestern blot Stripping Buffer© (Perbio Science). Imaging and elaboration were performed with the LI-COR Odyssey Fc system (LI-COR Biosciences).
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4

Quantifying pLck and pZap70 Activation in CTLs

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Human E183 CTL were resuspended at 106 per ml and 100 μl of the cells was added to each well containing the lipid bilayer and the specific pMHC monomer. The CTL were stimulated for 5 min at 37 °C, and the reaction was stopped by adding 100 μl of 8% paraformaldehyde. The cells were fixed at room temperature for 12 min. The samples were permeabilized with 0.3% Triton-X 100 for 4 min at room temperature, then blocked with 10% normal goat serum for 1 h. To visualize pLck or pZap70, the sample was labeled with 1:100 of anti-pSrc (Y416) (Cat# 6943 T) or anti-pZap70 (pY319) (Cat# 2717S) (Cell Signaling Technology) for 1 h at room temperature, followed by incubation with Alexa Fluor 488F(ab’) 2 fragment of goat anti-rabbit IgG (H + L) at a working concentration of 5 μg ml−1 (Invitrogen). TIRF microscopy was performed on an Olympus IX83 inverted microscope fitted with a four-laser TIRF module. Images were acquired using a 100×/1.49 NA oil-immersion lens. Fluorescence excited within the 100-nm evanescent field was recorded with a Hamamatsu ORCA Flash 4.0 camera.
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5

FHL1 Phosphorylation Signaling Pathways

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FHL1 (rabbit) antibody was purchased from ProteinTech. BCLAF1 (rabbit) and kindlin-2 (mouse) antibodies were from EMD Millipore. kindlin-2 (rabbit), Flag (mouse), GFP (mouse), and HA (mouse) antibodies as well as anti-flag M2 beads were purchased from Sigma-Aldrich. Src (mouse), β-actin (mouse), YY1 (mouse), and β-tubulin (mouse) were obtained from Santa Cruz Biotechnology, Inc. Anti–p-Src Y416 and –p-Tyr–100 specifically recognizing phosphorylated tyrosine were purchased from Cell Signaling Technology. Antibodies specifically recognizing Y149- and Y272-phosphorylated FHL1 were produced by immunizing rabbits with phosphorylated peptides FFPKGEDFYPCVTC and CHQEQVYPCPDCAKK, respectively (Kang Wei Shi Ji). Secondary antibodies conjugated with Alexa Fluor 488, 568, or 633 for immunofluorescence were purchased from Invitrogen. Src family kinase inhibitor PP2 was purchased from Sigma-Aldrich. λ-Phosphatase (P0753S) was obtained from New England Biolabs, Inc.
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6

Western Blot Analysis of Signaling Proteins

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Western blotting was performed as previously described [29 (link)], using the following antibodies: mouse anti-Cbl-b, mouse anti-c-Src, and rabbit anti-β-actin antibodies were obtained from Santa Cruz Biotechnology; rabbit anti-Akt, anti-p-Akt (Ser473), anti-ERK1/2, anti-p-ERK1/2 (Thr202/Tyr204) and anti-p-Src (Y416) antibodies were obtained from Cell Signaling Technology, mouse anti-RANK antibodies were obtained from R&D, USA. Proteins were visualized using the enhanced chemiluminescence reagent (SuperSignal Western Pico Chemiluminescent Substrate; Pierce, Rockford, IL, USA) and signals were quantitated using NIH Image J software.
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7

Protein Interactions in Cell Signaling

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Antibodies used were as follows: anti-Eps8, anti-paxillin, anti-GM130 and anti-p130Cas antibodies (BD Transduction Laboratories, NJ), anti-FAK, anti-pSrc Y416, anti-Src (clone 36D10), anti-LC3B, anti-GAPDH, anti-pPaxillin Y118 and anti-β-actin antibodies (Cell Signaling Technologies, Danvers, MA), as well as anti-FAK antibody conjugated to agarose (clone 4.47) (Millipore, Billerica, MA) and anti-LC3B for immunoprecipitations (MBL, Woburn, MA). The anti-TagCGYFP antibody was purchased from Evrogen (Cambridge, UK). TRITC–phalloidin was purchased from Life Technologies (Paisley, UK). Horseradish-peroxidase-conjugated secondary antibodies against rabbit or mouse IgG were purchased from Cell Signaling Technologies. Dasatinib was obtained from Bristol Myers Squibb (Princeton, NJ). The pEGFP-Eps8 1–821 and pEGFP-Eps8 1–535 constructs were a generous gift from Giorgio Scita (FIRC Institute of Molecular Oncology, Milan, Italy).
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8

Regulation of GPCR signaling by β-arrestins

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HEK293 cells transfected with BmOR3 in the absence or presence of βarrestin1/2 siRNA were starved for 12 h at 37 °C before stimulated with 1 μM bombykal for 15 min. The cells were lysed in ice-cold lysis buffer (50 mM Tris-HCl, pH 7.4, 150 mM NaCl, 1 mM NaF, 1% Triton, 2 mM EDTA, 1% NP-40, 1% protease and phosphatase inhibitor cocktail), and the supernatant was collected after centrifugation. Proteins were separated by PAGE and transferred to PVDF membrane. After blocking in PBS containing 5% bovine serum albumin and 0.1% Tween-20, the membrane was incubated with the primary antibody at 4 °C overnight, followed by incubation with HRP conjugate–secondary antibody at RT for an hour. The signals were detected with the ECL system (Thermo Fisher Scientific). Primary antibodies were as follows: anti-ERK (Santa Cruz, Cat. No. sc-154); anti-pERK (Proteintech, Cat. No. 15361-1-AP); anti-SRC (Cell Signaling Technology, Cat. No. 2109S); anti-pSRC(Y416) (Cell Signaling Technology, Cat. No. 2101S); anti-beta actin (ORIGENE, Cat. No. TA811000); anti-βarrestin1(Proteintech, Cat. No. 15361-1-AP); anti-βarrestin2 (Proteintech, Cat. No. 10171-1-AP).
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9

Antibody Characterization and Protein Analysis

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Following antibodies were obtained commercially: anti-KIF1C (BETHYL), anti-p-Src-Y416 (Cell Signaling Technology), anti-c-Src (CALBIOCHEM), anti-Flag (M2), anti-Myc for IP (9E10, Santa Cruz) and WB (A14, Santa Cruz), anti-α-tubulin (MBL), anti-GFP (that recognizes Clover) for immunoprecipitation (Sigma) and immunoblotting (JL-8, Takara), anti-RFP (that recognizes mCherry) (MBL), anti-cortactin (4F11, Millipore), and anti-Phosphotyrosine (4G10, Millipore). Dasatinib was purchased from Cell Signaling Technology.
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