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32 protocols using dicoumarol

1

NQO1 Thermal Stability Assay

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DSC studies were performed on a capillary VP-DSC differential scanning calorimeter (Malvern Instruments) with a cell volume of 0.135 mL. Scans were performed at a 1–3 °C·min−1 in a temperature range of 5–80 °C using 5–30 μM NQO1 (monomer) in 50 mM HEPES-KOH, pH 7.4. In some experiments, FAD and/or dicoumarol (both from Sigma-Aldrich) were added to a final concentration up to 0.5 mM. Stock solutions of dicoumarol 10 mM were prepared in 0.1 M NaOH.
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2

Sulforaphane Regulation of Antioxidant and Apoptotic Pathways

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Sulforaphane was purchased from LKT Laboratories (St. Paul, MO). Bovine serum albumin (BSA), menadione, dicoumarol and NADPH were purchased from Sigma-Aldrich Corporation (St. Louis, MO). Primary antibodies against NQO1, Keap1, Nrf2, NFκB p50, NFκB p65, IκB, caspase 2, caspase 3, bcl-2, bax, actin, histone H1 and secondary antibodies were purchased from Santa Cruz Biotechnology, Inc (Santa Cruz, CA). Anti-poly (ADP-ribose) polymerase (PARP) antibody was purchased from Biomol International, L.P. (Plymouth Meeting, PA). Fetal calf serum, RPMI-1640, penicillin and streptomycin were purchased from Cellgro, Inc (Herndon, VA). All other chemicals and solvents used were of analytical grade.
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3

Copper-Diethyldithiocarbamate Synthesis

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CuET was prepared by direct synthesis from water solutions of diethyldithiocarbamate sodium salt and copper (II) chloride as described previously53 (link). CuET for in vivo experiments was prepared equally with slight modification. The reaction between diethyldithiocarbamate sodium salt and copper (II) chloride was performed in the sterile 1% aqueous solution of bovine serum albumin. Resulting solution was directly used. The following chemicals were purchased from commercial vendors: tetraethylthiuram disulfide (disulfiram, DSF) (Sigma), sodium diethyldithiocarbamate trihydrate (Sigma), copper-D-gluconate (Sigma), bortezomib (Velcade, Janssen-Cilag International N.V.), MG132 (Sigma), DBeQ (Sigma), NMS873 (Abmole), cycloheximide (Sigma), dicoumarol (Sigma), 1,10-phenanthroline (Sigma), MLN7243 (Active Biochem).
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4

Evaluating Compound Interactions in Cells

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β-lapachone was obtained from Southeast Pharmaceuticals, Inc. (Jiangsu, China). Propofol, N-acetyl cysteine (NAC), dicoumarol (DIC), 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT), glucose 6-phosphate, glucose 6-phosphate dehydrogenase, β-nicotinamide adenine dinucleotide phosphate (NADP), uridine 5’-diphosphate-glucuronic acid (UDPGA), D-saccharic acid 1,4-lactone, β-D-glucuronidase and chlorzoxazone, were all purchased from Sigma Aldrich. Diazepam was obtained from the National Institute for the Control of Pharmaceutical and Biological Products (Beijing, China).
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5

Pooled Human Liver Microsome Characterization

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Pooled human liver microsomes (200 donors,
lot no. 1210347) were purchased from Xenotech (Lenexa, USA). Bovine
serum albumin (BSA), 2,6-dichlorophenolindophenol (DCPIP), dicoumarol,
glutathione (GSH), acetaminophen, mefenamic acid, resorufin, tacrine,
and iminostilbene were from Sigma-Aldrich (Steinheim, Germany). 4′-
and 5-Hydroxy diclofenac were obtained from Toronto Research Chemicals
(North York, Canada. Amodiaquine dihydrochloride was obtained from
INC Biomedicals (Aurora, OH, USA), and N-desethylamodiaquine
was obtained from BD Biosciences (Franklin Lakes, NJ, USA). Clozapine
was obtained from Duchefa Farma (Haarlem, The Netherlands). 1-Benzyl-1,4-dihydronicotinamide
(BNAH) was obtained from TCI Europe (Zwijndrecht, Belgium). All other
reagents and chemicals were of analytical grade and purchased from
standard commercial suppliers.
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6

Cell Culture Protocols for Cancer and MEF Cell Lines

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Human cancer cell lines MCF-7 (ATCC® HTB-22), MDA-MB-231 (ATCC® HTB-26™), HeLa (ATCC® CCL-2™) and PANC-1 (ATCC® CRL-1469™) were cultured in Dulbecco’s modified Eagle’s medium (DMEM) supplemented with 10% fetal bovine serum (FBS). Human cancer cell lines T47D (ATCC® HTB-133™) and BxPC3 (ATCC® CRL-1687™) were cultured in RPMI-1640 medium supplemented with 10% FBS. Antibiotics were added to the culture medium (penicillin 10,000 units/ml and streptomycin 10 mg/ml). Cells were maintained at 37°C in a humidified atmosphere containing 5% CO2 and 95% O2. Cell lines were authenticated using CellCheck by IDEXX Bioresearch, and tested for mycoplasma using PlasmoTest™ - Mycoplasma Detection Kit (InvivoGen, Inc). Immortalized Sirt2+/+ and Sirt2-/- MEFs were made as described previously [29 (link)]. For the various cell treatments, Nocodazole, Thymidine, Dicoumarol, NAD and Paclitaxel were purchased from Sigma-Aldrich.
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7

Formulation and Characterization of Lipid-Based Nanocarriers

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Compritol® 888 ATO, PEG-SA, soybean phosphatidylcholine (S100), oleic acid, glycerin monostearate, Lapa, DOX, dicoumarol (Di), MTT, DAPI, and DiR were purchased from Sigma-Aldrich Co. (St. Louis, MO, USA). All other organic reagents were purchased from Sinopharm Chemical Reagent Co., Ltd (Shanghai, China).
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8

Synthesis and Purification of ß-Lap

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ß-Lap was synthesized and purified by us and stock solutions prepared at 50 mM in DMSO. Methoxyamine, dicoumarol, Rucaparib and BAPTA-AM were purchased from Sigma-Aldrich (St. Louis, MO).
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9

Comprehensive Enzymatic Assay Protocol

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Acetaminophen, bufurolol, 1’-hydroxybufurolol, caffeine, dexamethasone, ethoxyresorufin, glutathione (reduced), mephenytoin, 4-hydroxymephenytoin, pentoxyresorufin, resorufin, phenacetin, warfarin, 7-hydroxywarfarin, phenylmethanesulfonyl fluoride, p-nitrophenol (PNP), UDP-glucuronic acid (ammonium salt) (UDPGA), 1-chloro-2, 4-dinitrobenzene (CDNB), 2-mercaptoethanol, 3’-Phosphoadenosine-5’-phosphosulfate (PAPS), flavin adenine dinucleotide, dicoumarol, 2,6 dichlorophenolindophenol, 2-naphthylsulfate, high performance liquid chromatography (HPLC) grade acetonitrile, and methanol were purchased from Sigma–Aldrich (St. Louis, MI, USA). Nicotinamide adenine dinucleotide phosphate (NADPH) and dimethyl sulfoxide were purchased from SRL Pvt. Ltd (Mumbai, Maharashtra, India). Testosterone, 6b-hydroxyTestosterone, chlorzoxazone, and 6-hydroxychlorzoxazone were purchased from Cayman chemical company (USA). Ultrapure water (18.2 M/Ω cm) was obtained from Milli-Q PLUS PF water. All other chemicals were commercially available or HPLC grade.
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10

Amyloid-β Aggregation Inhibition Assay

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Human Aβ1-42 as a click peptide was purchased from GenScript (Catalog# RP10017) and used as received. The click peptide undergoes a chemical reaction at physiological pH leading to the formation of monomeric Aβ1-42 [19 (link)]. Thioflavin T (ThT), FAD, nicotinamide adenine dinucleotide-reduced form (NADH), and dicoumarol were purchased from Sigma-Aldrich. Aβ1-42 covalently linked to HiLyte Fluor 647 (HF647) dye was purchased from AnaSpec (Catalog# AS-64161). Ultrapure Milli Q water was used throughout the study. Aggregation studies were performed in 100 mM potassium phosphate buffer, pH 7.4. Recombinant human WT NQO1 and the NQO1*2 variant were purified from Escherichia coli using Cibacron-blue affinity chromatography as previously described [20 (link),21 (link)]. The purified proteins resolved as single bands near 30 kDa. FAD-deficient apo NQO1 was generated by incubating WT NQO1 in two cycles of 50 mM potassium phosphate buffer, pH 7.4 containing 2 M potassium bromide as previously described [22 (link)]. Purified NQO1 proteins were stored in 50 mM potassium phosphate buffer, pH 7.4 containing 250 mM sucrose and 5 µM FAD at –80°C.
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