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19 protocols using c0107

1

Histological Analysis of Tissue Samples

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Tissues including heart, liver, spleen, lung, kidney and tumor were dissected, embedded in paraffin, sectioned, and stained with H&E using routine methods. Briefly, tissues were resected and fixed overnight in 4% paraformaldehyde solution (Sangon Biotech, China) at room temperature overnight. Subsequently, fixed specimens were embedded in paraffin, divided into 5-μm-thick sections, and then stained with hematoxylin staining solution (C0107, Beyotime) and eosin staining solution (C0109, Beyotime). The prepared slides were photographed by a microscope (IX51, Olympus).
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2

Histological Analysis of GBM Tumor Tissue

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After xylol dewaxing, the GBM tumor tissue slices were immersed in hematoxylin solution (C0107, Beyotime, China) for 5 min and then rinsed with distilled water for 1 min. After being differentiated into 75% hydrochloric acid ethanol for 30 seconds, the slices were immersed in 1% eosin solution (C0109, Beyotime, China) for 3 min. After dehydrating, xylene was utilized as transparent. The neutral balsam (D054-1-1, Jiancheng, China) was exploited to seal the slices. In the end, the slices were placed in an optical microscope (Z723975-1EA, Sigma, USA) to observe the tissue integrity.
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3

Histological Analysis of Murine Nasal Mucosa

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The collected nasal mucosa tissues of mice were fixed in 10% neutral formalin (HT501128, Sigma-Aldrich, St. Louis, MO) for 24 h, and then embedded in paraffin (P3558, Sigma-Aldrich, St. Louis, MO). Next, the tissues were made into sections using paraffin slicer (E0972, Beyotime, Shanghai, China). Subsequently, the sections were immersed in xylenes (247642, Sigma-Aldrich, St. Louis, MO) for deparaffinization. After that, the tissue samples were placed in different gradients of ethanol prepared with 100% ethanol (E7023, Sigma-Aldrich, St. Louis, MO) and double distilled water for sample hydration. Later, the tissue sections were soaked and washed three times for 3 min using phosphate buffer saline solution (PBS; C0221A, Beyotime, Shanghai, China). After being stained thoroughly with haematoxylin solution (C0107, Beyotime, Shanghai, China) for 10 min and eosin solution (C0109, Beyotime, Shanghai, China) for 3 min, the sections were soaked with xylene twice for 4 min each time, and then the tissue samples were sealed with neutral resin. Finally, the sections were observed and photographed under an optical microscope (DMi8, Leica, Wetzlar, Germany) at a magnification of ×200.
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4

Immunohistochemical Analysis of Vimentin Expression

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Tumor samples were fixed in 4% formaldehyde (P0099, Beyotime) overnight and dehydrated with gradient concentrations ethanol. After being embedded into parrafin (YA0011, Solarbio), tissues were cut into sections with the 5 μm thick on an Automatic Microtome (E0972, Beyotime). Slices were then dried, deparaffinized and subjected to antigen retrieval with Citrate Antigen Retrieval Solution (pH 6.0, P0081, Beyotime) at 94 °C for 15 min. Subsequently, sections were blocked with 1% BSA (ST2249, Beyotime) for half an hour before the incubation with primary antibodies targeting Vimentin (ab92547, 1:200, Abcam, Cambridge, UK) and secondary antibody labeled with HRP (ab6721, 1:1000, Abcam). The sections were re-stained hematoxylin (C0107, Beyotime) and photographed with a light microscope (Olympus).
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5

Immunohistochemical Analysis of TXNIP and c-Caspase-3

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The immunohistochemistry process began with deparaffinization of the tissue sections in xylene, followed by rehydration using graded alcohol. Next, the sections were treated with 3% H2O2 (PV-6001, ZSGB-BIO) for 5 minutes and subsequently blocked for 30 minutes using 5% goat serum (16210064, Gibco). After this blocking step, the liver tissues were incubated overnight with specific antibodies against TXNIP (Huabio, ET1705-72, 1:200) and c-caspase-3 (Asp175) (Cell Signaling Technology, 9661, 1:200). Following three PBS washes, the sections were further incubated with an enzyme-conjugated secondary antibody (PV-6001, ZSGB-BIO) for 60 minutes. Staining was completed using DAB chromogen (ZLI-9017, ZSGB-BIO), and the nuclei were counterstained with hematoxylin (C0107, Beyotime) for a brief period of 3 seconds. The resulting images for every sample (200× magnification) were scanned with a pathological section scanner (HS6, SUNNY INSTRUMENT CO., LTD). The specific antibodies utilized for staining are detailed in Table S2.
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6

Immunohistochemical Analysis of FTO and FOXP2

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Rat adenohypophysis tissues were fixed in 4% paraformaldehyde (MA0192, Meilunbio, Dalian, China) for 48 h and then made into paraffin sections. After dewaxing and rehydration, the sections were antigenically repaired using EDTA antigen retrieval solution (P0084, Beyotime, Shanghai, China). The samples were sequentially incubated in blocking solution (incubated for 30 min at room temperature), primary antibody (FTO antibody 1:2000 dilution, FOXP2 antibody 1:200 dilution, overnight at 4 °C), and secondary antibody (1:500 dilution, incubated for 1 h at room temperature away from light). The antibodies used were as follows: FTO antibody (ab280081, Abcam, UK); FOXP2 antibody (20,529–1-AP, Proteintech, USA); and anti-rabbit IgG (H + L) antibody (5220–0336, SeraCare, USA). Both antibody incubations were followed by washing three times with PBS (5 min at room temperature). The nucleus was restained with hematoxylin staining solution (C0107, Beyotime, Shanghai, China) after development using a DAB horseradish peroxidase color development kit (P0203, Beyotime, Shanghai, China). The sections were dehydrated and sealed. Images were visualized and collected using an Olympus fluorescence microscope. Three randomly selected images from the immunohistochemistry results were analyzed for positive reaction areas using ImageJ for statistical analysis.
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7

Histological Examination of Tissue Samples

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Tissues including heart, liver, spleen, lung, kidney and tumor were dissected, embedded in paraffin, sectioned, and stained with H&E using routine methods. Briefly, tissues were resected and fixed overnight in 4% paraformaldehyde solution (Sangon Biotech, China) at room temperature. Subsequently, fixed specimens were embedded in paraffin, divided into 5 μm-thick sections, and then stained with hematoxylin staining solution (C0107, Beyotime) and eosin staining solution (C0109, Beyotime). The prepared slides were photographed by a microscope (IX51, Olympus).
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8

Immunohistochemical Analysis of Caveolin-1 and Collagen I

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After antigen retrieval in water bath and normal goat serum (C0265, Beyotime) blocking, the slides were incubated with primary antibodies to Caveolin-1 (ab32577, 1:2000, Abcam) or collagen I (ab270993, 1:500, Abcam) (Fang et al. 2018 (link)), which was followed by incubation with secondary antibody goat anti-rabbit IgG (ab6721, 1:1000, Abcam). Finally, the staining processes were performed with diaminobenzidine colorimetric reagent solution (P0203, Beyotime) and hematoxylin (C0107, Beyotime). HE staining was used for histological observation as previously described (Liu et al. 2021 (link)).
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9

Immunohistochemical Analysis of Aortic Root

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Aortic root was snap-froze in optimal cutting temperature compound, and 4 um frozen sections were cut and the endogenous peroxidase activity blocked with Hematoxylin staining solution (P1000A, Beyotime Biotechnology) for 10 min. Antigen retrieval was performed with quick antigen retrieval solution (P0090, Beyotime Biotechnology), then sections were blocked with 5% normal serum, and incubated with the primary antibody (1:100, ab125212, Abcam) for 24 h at 4 °C, followed by biotinylated secondary antibody (P0101, Beyotime Biotechnology) diluted 1:100, and counterstain with hematoxylin (C0107, Beyotime Biotechnology) for 1 min. Clear the tissue slides in 3 times of xylene and coverslip using mounting solution, then sections were observed under microscopy.
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10

Histological Tissue Analysis Protocol

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Tumor masses were resected and fixed in 4% paraformaldehyde solution at room temperature overnight. Fixed specimens were paraffin-embedded and then cut into 5–8 μm-thick sections. The paraffin-embedded tissue sections were deparaffinized with xylene and rehydrated. The hydrated tissue sections were soaked and washed with phosphate buffer saline (PBS) three times for 5 min each time. The samples were then stained in hematoxylin staining solution (C0107, Beyotime) for 10 min and washed in running water for 10 min. Next, the samples were differentiated in 1% acid alcohol for 10 s, washed in running water for 30 min, and were then counterstained in eosin staining solution (C0109, Beyotime) for 3 min and washed in running water for 10 min. After the staining, the tissue sections were dehydrated in a gradient manner, with concentrations of 80% ethanol for 5 s, 95% ethanol for 2 min, and anhydrous ethanol for 2 min, respectively. Last, the tissue sections were sealed by a drop of neutral gum over the tissue and then covered by a coverslip. The prepared slides were then observed by a microscope (IX51, Olympus).
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