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28 protocols using cd45 efluor450

1

Maternal-Cord Cell Subsets Analysis

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A supplementary cell-count was performed in a subset of 9 pairs of maternal-cord samples by another experienced laboratory worker. The EDTA-tubes were stored at 2-8 C, and prior to analysis they were acclimatized to room-temperature. After a thorough mixing and counting in a hemocytometer, 500,000 cells were distributed in 2 tubes containing CD20-FITC (cat# 345792), CD8-PE (cat# 345773), CD3-PerCP (cat#345766), CD4-APC(cat# 345771) (all Becton Dickinson), CD45-eFluor450 (cat# 48-0459-92, eBiosciences) or CD15-FITC (cat# 332778), CD34-PE (cat# 345802), CD14-PerCP (cat# 345786), CD10-PECy7 (cat# 341112) (all Becton Dickinson), CD45-eFluor450 (cat# 48-0459-92, eBiosciences), respectively. The cells were stained according to the manufacturer´s recommendation. Following incubation with antibodies, the samples were lysed and washed and measured on a FACS Canto II flow cytometer. The distribution of hematological subpopulations was assessed by analysis of scatter characteristics on FACS Diva 6.1.3 software.
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2

Multiparametric Phenotypic Profiling

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5-BDBD (Cat. SML0450) was obtained from Sigma-Aldrich, St. Louis, MO. Flow cytometry fluorophores CD45-efluor450 (Cat 48045182), CD11b-APC-eFluor780 (Cat. 47011282), and Ly6C-PerCP-Cy5–5 (Cat. 45593282), as well as Chemiluminescent HRP substrate (Cat. 34580) and BCA Protein estimation kit (Cat. 23227) were procured from Thermo Fisher Scientific Inc., Rockford, IL. Fluorophore Ly6G-PE (Cat 501276U025) was from Tonbo Biosciences, San Diego, CA., IL.
Primary antibodies used in western blot against P2X4R (Cat. 135341AP), BDNF (Cat. 256991AP), Beta-Actin (Cat. HRP-60008), and secondary antibody Anti-mouse (Cat. SA00002–1) were from Protein Tech, Rosemont, IL. Primary anti- IBA1 (Cat. Ab5076) was procured from Abcam, Cambridge, MA. Secondary anti-rabbit (Cat. 7074S) was from Cell Signal Tech., Danvers, MA and anti-goat Alexa fluor 594 (Cat. A11058) was from Thermo Fisher Scientific Inc., Rockford, IL. Trizol (Cat.15596026) and TaqMan universal master mix reagent (Cat.444040) were from Ambion, Life Technologies, Camarillo, CA.
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3

Characterization of Immune Cell Populations

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Flank skin was harvested from euthanized animals and placed in RPMI 1640 with L-glutamine and HEPES (Gibco), containing 10% serum (Gibco). Tissue was minced and digested in RPMI with 1% serum, 0.1mg/mL DNase 0.25mg/mL TL liberase (Roche) overnight at 37°C with 5% C02. The digestion reaction was quenched using 10mL of RPMI 1640 with 10% serum and 1mM EDTA. Digested cells were filtered through a 70μM filter before being washed twice with PBS. After antibody blocking (CD16/32, ebioscience), cells were stained with an amine reactive live/dead dye (efluor506, Thermo Scientific) and an antibody panel (Ly6G-PE, F4/80-BrilliantViolet600, CD11c-BV711, MHCII-Alexa700, CD11b-PECy5, Ly-gC-Alexa488, CD45-efluor450, CD3-APC, CD8-Alexa488, CD4-SuperBright600, Thermofisher) and fixed using CytoFix (BD) for 30m at 4°C in the dark. Fixative was washed, and stained cells were captured on a BD 5L LSR Fortessa.
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4

Adipose Tissue Macrophage Identification

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Adipose tissue fractionation and flow cytometric analysis were performed to identify adipose tissue macrophage (Singer et al., 2014 (link)). Briefly, whole adipose tissue was minced and digested with type II collagenase (1 mg/mL, Sigma, #C6885) for 15 to 30 min at 37°C on a rocker. Samples were filtered and centrifuged, and red blood cell lysis was conducted on SVF. SVF single cell suspensions were then incubated with the antibodies. The following antibodies were used: CD45 eFluor450 (Clone 30‐F11, Invitrogen), CD64 PE (Clone X54‐5/7.1, BD Pharmingen), CD11c APC eFluor780 (Clone N418, Invitrogen), CD45 FITC (Clone 30‐F11, Biolegend), F4/80 PE (Clone BM8, Biolegend), and CD11b BV421 (Clone M1/70, Biolegend). Flow cytometry was performed using a BD LSRFortess flow cytometer and analyzed with FlowJo V10.7 software. Macrophages were defined as CD45+CD64+ or CD45+CD11b+F4/80+, and infiltrated macrophages were defined as CD45+CD64+CD11c+(Singer et al., 2015 (link)).
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5

Isolation and Analysis of Mouse Skin Immune Cells

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Mouse skin samples were mechanically disrupted followed by digestion using Liberase TL (Sigma, 1 h incubation at 37 °C) at concentration 0.25 mg/mL dissolved in RPMI‐1640 with l‐glutamine (Corning), supplemented with 1 mM sodium pyruvate, MEM nonessential amino acids, and 20 mM HEPES (all from Gibco). Following digestion, the cell suspension was filtered twice consequently using 70‐ and 40‐μm strainers (Greiner), and washed and stained for analysis in flow buffer containing 2% bovine serum albumin (Sigma). The following anti‐mouse antibodies were used: F4/80 APC, CD45 eFluor® 450, Ly6c Alexa Fluor® 488, CD206 PE‐Cy7, and Fixable Viability Dye eFluor 506 (all from Invitrogen and Thermo Fisher Scientific). Appropriate isotype controls were also purchased from Invitrogen, Thermo Fisher Scientific, and TruStain FcX, and Fc blocking antibodies were from Biolegend. Data were collected using BD FACSCanto® II cytometer and analyzed with FlowJo v10.5.3 software (BD).
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6

Phenotypic Characterization of P3 JBMMSCs

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P3 JBMMSCs were digested using trypsin before their resuspension in α-MEM with 10% FBS. Phosphate-buffered saline (PBS) was employed for washing the cells twice. Following this, the cells were incubated for 30 min with antibodies against CD45-eFluor 450, anti-CD34-PE, anti-CD44-FITC, anti-CD146-PE, anti-CD90-APC (Invitrogen, USA), and anti-CD31-FITC (Bioss, China). The cell suspension was then subjected to centrifugation for 5 min at 1000 rpm. Lastly, the cell suspension was moved to a fresh detection tube, and cell surface antigen was detected making use of flow cytometry (BD Biosciences, USA).
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7

Leukocyte Isolation from Perfused Mouse Brains

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Perfused mouse brains were collected in RPMI medium, ground gently to disperse tissue, and spun in 90% Percoll (P1644; Sigma) with a 63% Percoll underlay to isolate leukocytes at the interface. Leukocytes were resuspended in fluorescence-activated cell sorting (FACS) buffer (1× PBS, 1% bovine serum albumin) and stained with the appropriate fluorescently labeled antibodies. Labeled cells were fixed for 20 min in 4% paraformaldehyde before analysis on an LSRFortessa instrument (BD Biosciences). Antibodies used in this study (eBiosciences) were the following: CD45-efluor450 (catalog no. 48-0451-82), CD4-allophycocyanin (APC) (17-0041-82), CD8-fluorescein isothiocyanate (FITC) (11-0081-82), F4/80-FITC (11-4801-82), Ly6G-FITC (11-5931-82), and Ly6C-APC (17-5932-82).
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8

Brain Mononuclear Cell Isolation and Characterization

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Mononuclear cells were isolated from brain and spinal cord of CX3CR1-WT, CX3CR1-KO, and hCX3CR1I249/M280 mice by homogenization of CNS tissues as previously described (Pino and Cardona, 2011 (link)). Cellular suspensions were blocked using anti-mouse CD16/CD32 (clone 2.4G2, BD Pharmingen) followed by incubation for 30 min with a mix of fluorochrome-conjugated anti-mouse antibodies as follows. Antibody cocktail for mononuclear myeloid cells and activation markers: CD45 APC-Cy7 (clone 30-F11, BioLegend), CD11b PE-CF594 (clone M1/70, BD Biosciences), CD11c PE-Cy7 (clone N418, eBioscience), I-A/I-E BV421 (MHC-II clone M5/114.15.2, BD Biosciences), CD86 PerCP/Cy5.5 (clone GL-1, BioLegend), Ly6C AF647 (clone ER-MP20, Serotec), Ly6G PE (clone 1A8, BD Pharmingen). T cells were characterized using the following antibody mix: CD45 eFluor 450 (clone 30-F11, eBioscience), CD3e PE-Cy7 (clone 145-2C11, BioLegend, CD8a APC (clone 53-6.7, eBioscience), CD4 APC-Cy7 (clone RM4-5, BioLegend), CD44 PerCP (clone IM7, eBioscience). Samples were acquired on an LSRII (BD Biosciences) at the Cell Analysis Core, UTSA. Data analysis was performed using FlowJo v10. For cell sorting, brain cell suspensions (pooled 3 mice per sample) were stained with antibodies against CD45 and CD11b and after gating for single cells the CD45LoCD11b+ population was separated in a FACS ARIA-II (BD Biosciences).
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9

Comprehensive Immune Cell Profiling

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The following pre-conjugated antibodies were used for flow cytometry: CD56-PE (clone 5.1H11), CD56-PC7 (clone 5.1H11), CD56-PacBlue (clone 5.1H11), CD3-FITC (clone OKT3), CD16-BV786 (clone 3G8), CD57-PE (clone HCD57), CD3-APC (clone OKT3), CD3-PacBlue (clone UCHT1), CD25-PE (clone PC61.5), PD-L1-APC (clone 29E.2A3), CD8-PC7(clone RPA-T8), IFNγ-Alexa647(clone 4S.B3), TNFα-PacBlue(clone Mab11) (BioLegend); CD45-APC(clone 2D1), CD45-eFluor450(clone 2D1), PD-1-eVolve655 (clone J105), FoxP3-FITC (clone PCH101), TNFα-eF450 (clone Mab11) (eBioscience); and CD4-APC-H7 (clone RPA-T4) (BD Biosciences). All samples were acquired on a CytoFlex flow cytometer and analyzed using CyteExpert or FlowJo software (v10.0.7).
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10

Apoptosis Analysis of Prostate Epithelial Cells

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TUNEL staining of OCT-embedded prostate was conducted per manufacturer’s protocol (Roche). Apoptosis analysis of live prostate epithelial cells was conducted by first labeling single cell prostate isolates with CD49f-PE (eBioscience), Sca-1-PE-Cy7 (BioLegend), CD31-eFluor450 (eBioscience), CD45-eFluor450 (eBioscience), Ter119-eFluor450 (eBioscience). This was followed by labeling with Annexin V-APC (BD Pharmingen) and 7-AAD (BD Pharmingen) following the manufacturer’s instructions (BD Biosciences). Data was acquired using a BD FACS Canto (BD Biosciences) and analyzed with FlowJo (v.9.4.10).
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