The largest database of trusted experimental protocols

4 protocols using cd63 h5c6

1

Characterization of Milk-Derived Extracellular Vesicles

Check if the same lab product or an alternative is used in the 5 most similar protocols
A minimum of 1.0 × 1010 vesicles was used for western blot. Crude milk EVs were digested with RIPA buffer (50 mM Tris‐HCl, pH 7.5, 150 mM NaCl, 1% v/v Nonidet P‐40, 0.5% v/v sodium deoxycholate, and 0.1% SDS) supplemented with protease inhibitor cocktail (Sigma‐Aldrich, St. Louis, Missouri, USA). After heating for 5 min by 95°C, pEV lysates were centrifuged for 20 min at 12,000 × g, and supernatant was collected. Samples were loaded on a 10–12% SDS‐PAGE gel and was subjected to electrophoresis at 80 V for 30 min, thereafter 1 h at 100 V at 4°C. Proteins were blotted onto nitrocellulose membranes (on ice, 275 mA, 120 min) and blots were blocked in 5% BSA (>95% purity). Overnight incubation at 4°C with primary antibody was followed by 1 h incubation at room temperature with an HRP‐secondary antibody. Blots were visualized using enhanced chemiluminescence on the ImageQuant LAS400. Antibodies used; CD81 (B‐11), Santa Cruz, sc‐166029; HSP70 (3A3), Santa Cruz, sc‐32239: CD63 (H5C6), BD Pharmingen, 556019; ALIX (1A12), Santa Cruz, sc‐53540.
+ Open protocol
+ Expand
2

Protein Characterization of Small and Large Extracellular Vesicles

Check if the same lab product or an alternative is used in the 5 most similar protocols
The pellets of sEVs and lEVs were lysed with RIPA buffer (Pierce, Rockford, IL, USA) on ice for 40 min. Insoluble material was pelleted by centrifugation for 15 min at 11,000 × g at 4°C. Supernatants were transferred to a new tube, and the protein concentrations were quantified with a BCA Protein Assay kit (Beyotime, Shanghai, China) according to the manufacture’s protocols. Next, 20 μg of protein was loaded into gels for separation by 10% sodium dodecyl sulphate polyacrylamide gel electrophoresis (Bio-Rad, Hercules, CA, USA) after which the proteins were transferred onto a polyvinylidene fluoride membrane (Millipore, Bedford, MA, USA). After blocking with 5% skimmed milk powder, primary antibodies were added, and the membrane was incubated at 4°C overnight. Primary antibodies used were CD9 (C4, Santa Cruz Biotechnology, Dallas, TX, USA; 1:500), CD81 (B11, Santa Cruz; 1:1000), CD63 (H5C6, BD Biosciences, Franklin Lakes, NJ, USA; 1:1000), Tsg101 (4A10, Abcam, Cambridge, UK; 1:2000), GM130 (4A10, Abcam, Cambridge, UK; 1:500) and Calnexin (Roteintech Group, INC; 1:1000). After washing with PBS, the membrane was further incubated with the secondary antibody for 1 h at room temperature. Proteins were visualized using an ECL chemiluminescence staining assay kit (Bio-Rad) and the density of each protein band was quantified.
+ Open protocol
+ Expand
3

Western Blot Analysis of Extracellular Vesicles

Check if the same lab product or an alternative is used in the 5 most similar protocols
Standard western blot analysis was performed by denaturing the EV samples isolated from 250 μl of ascites and loading them onto 4–12% NuPAGE Bis-Tris Gels in reducing conditions (Thermo Fisher Scientific, USA). After gel electrophoresis, the proteins were transferred to a nitrocellulose membrane. The membrane was then probed with a primary antibody followed by a HRP-conjugated secondary antibody. The primary antibody was detected using a chemiluminescent HRP-substrate (Super Signal West Solution, Thermo Fisher Scientific, USA). The chemiluminescent signals were analyzed with Image Lab software (Bio-Rad Laboratories, USA). The band intensities of each individually analyzed protein were quantified by subtracting the background signal and normalizing to the corresponding β-actin band intensity. Results were given as the protein to β-actin ratio. The primary antibodies were mouse antibodies against the human proteins β-actin (C4), β-catenin (E-5), CD71 (H68.4), CD9 (C-4), Alix (1A12), CD59 (H-7), EpCAM (0.N.276) (Santa Cruz Biotechnology Inc., USA), CD63 (H5C6) (BD Biosciences, USA), and FN1-EDA (IST-9) (abcam PLC, UK). All primary antibodies were used in a 1 : 50 dilution; only anti-FN1-EDA was diluted 1 : 500. The secondary antibody was a goat anti-mouse IgG-HRP conjugate (sc-2031, Santa Cruz Biotechnology Inc., USA) and diluted 1 : 1250.
+ Open protocol
+ Expand
4

Antibodies Used for Immunofluorescence

Check if the same lab product or an alternative is used in the 5 most similar protocols
Antibodies used in this study include in-house antibodies against clathrin, AP-5 ζ (monoclonal antibody used for IF), µ5 and SPG11 monoclonal (4 (link)) and spastizin [PER antibody (49 (link))] and commercial antibodies against spastizin (Atlas HPA035693), EEA1 (BD Transduction Labs E41120), LAMP1 (Abcam ab24170 and H4A3), CIMPR (2G11; Calbiochem 444105), AP-2 µ2 (AP50; BD Transduction Labs 611351), LC3 (4E12; MBL M152-3B), LBPA (Jean Gruenberg), CD63 (H5C6; BD Biosciences), tubulin (DM1A, Abcam ab7291) and actin (C4, Abcam ab3280). Horse radish peroxidase-labelled secondary antibodies were purchased from Sigma and fluorescently labelled secondary antibodies from Invitrogen.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!