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10 protocols using anti mmp 9

1

Necrosis Assay and Immune Cell Profiling

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For necrosis assay, LLC tumor sections were HE-stained and histopathologically examined to identify necrotic areas in tumor tissues. CD11b+ cells accumulation was immunohistochemically assessed in formalin-fixed, paraffin-embedded 4 μm thick tumor serial sections by using a rabbit anti-mouse CD11b antibody (Bioss, Beijing). Frozen tissue sections were co-immunostained with rat anti-mouse CD11b-FITC (ab24874, Abcam) and rabbit anti-CD31 (SAB1302548, sigma), CXCR4 (ab2074, Abcam), Cy3-conjugated mouse anti-α-SMA (1:400; Sigma) antibodies, anti-iNOS (ab15323, Abcam) or anti-MMP-9 (Bioss, Beijing). Then staining with anti-CD 31 antibody, anti-CXCR4 antibody, anti-iNOS antibody and anti-MMP-9 antibody was followed by staining with a DyLight 488-conjugated goat anti-rabbit secondary antibody (1:200; Jackson ImmunoResearch).
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2

Antibody Characterization for Inflammation Analysis

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Anti-A20, anti-elastin antibody was obtained from Santa Cruz Technology (Santa Cruz Biotech, Santa Cruz, CA, USA). Primary polyclonal antibodies against phospho-IKKβ (Ser180/181), phospho-IκBα (Ser32/36), IKKβ, IκBα, and NF-κB p65 are from Cell Signaling Technology. Anti-CD45, anti-CD68 and anti-CD20 were from Boster, China. Anti-β-actin, anti-MMP-2, anti-MMP-9 were purchased from Bioss, China. Calcium chloride anhydrous (CaCl2) and zinc sulfate heptahydrate (ZnSO4·7H2O) were purchased from Sigma. Diaminobenzidine (DAB) and strept-avidin biotin complex (SABC) immunohistochemical kit were purchased from Boster (Wuhan, China). Fetal bovine serum and Dulbecco's modified Eagle's medium (DMEM) were purchased from Hyclone (Logan, Utah, USA).
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3

Protein Expression Analysis in Glioma Cells

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Protein was extracted from glioma cells and measured through the BCA kit (Beyotime Biotechnology, China) [18 (link)]. Then, the protein was extracted using SDS-PAGE (10%) and transformed into PVDF membranes (Millipore, USA). Afterwards, membranes were incubated using 5% skimmed milk and incubated with primary antibodies under 4°C overnight. The antibodies are as follows: anti-Bax (1: 2, 000, bs-28034R, Bioss, China), anti-Bcl-2 (1: 2, 000, bs-4563R, Bioss, China), anti-MMP-2 (1: 2, 000, bs-20705R, Bioss, China), anti-MMP-9 (1: 2, 000, bs-22502R, Bioss, China), anti-Cleaved caspase-3 (1: 2, 000, bsm-33199M, Bioss, China), anti-Cleaved caspase-9 (1: 2, 000, bs-3082R, Bioss, China), anti-Cox-2 (1: 2, 000, bs-10411R, Bioss, China), and anti-β-actin (1: 2, 000, bs-0061R, Bioss, China) with β-actin being the endogenous control. Afterwards, membranes were incubated for 1 h using a secondary antibody (1: 2, 000, bs-0311P-HRP, Bioss). Finally, ECL (Millipore, USA) was utilized to observe protein blots and quantified using ImageJ software (version 4.3; National Institutes of Health).
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4

Berberine and Cisplatin Synergistic Assay

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Berberine (purity: ≥98%) and cisplatin (purity: ≥99%) were purchased from Sigma Aldrich (St. Louis, MO, USA). Anti-MMP-2, anti-MMP-9, anti-Bcl-2, anti-Bax, anti-CyclinD1, anti-CDK4, anti-JNK, anti-phospho-JNK, anti-ERK, anti-phospho-ERK, anti-P38, and anti-phospho-P38 primary antibodies were purchased from Bioss (Beijing, China). Goat antimouse IgG and goat antirabbit IgG secondary antibodies were purchased from Life Science (Santa Cruz, CA, USA).
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5

Immunolocalization of Matrix Metalloproteinases

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Immunolabeling for matrix metalloproteinase-1 (MMP1), MMP3, MMP7, MMP9 and MMP12 was performed on fixed and paraffin-embedded sections. Briefly, following deparaffinization and rehydration, slides were subjected to antigen retrieval in citrate buffer (pH 6.0) for 20 min in a steamer, rinsed in PBS (0.01 mol/L phosphate buffer containing 0.15 mol/L NaCl, pH7.4), and incubated for 10 min in 3% H2O2 to block endogenous peroxidases. After that, the sections were incubated with anti-MMP1 (1:200; Bioss, China), anti-MMP3 (1:200; Bioss, China), anti-MMP7 (1:200; Bioss, China), anti-MMP9 (1:200; Bioss, China), and anti-MMP12 (1:200; Bioss, China) primary antibodies at 4°C overnight in a wet box, and then with HRP-labeled anti-rabbit secondary antibodies for 30 min, followed by counterstaining with hematoxylin, rehydration and mounting. Staining intensity was quantified by Image-Pro Plus 6.0 (Media Cybernetics) and expressed as mean using the formula “mean density = integrated optical density/area of interest”.
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6

Quantitative Protein Analysis of Xenograft Tumors

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The mouse xenograft tumor tissues were homogenized in the RIPA lysis buffer with PMSF, phosphatase and protease inhibitors (Keygen, Nanjing, China). The concentrations of total proteins in each sample were detected by bicinchoninic acid (BCA). Protein samples of each loading was separated in 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS/PAGE) gels and transferred onto polyvinylidene difluoride membrane (Millipore, Danvers, MA, USA). The polyvinylidene difluoride membranes were blotted with anti-KLF4, anti-BMI1, anti-MMP-2, anti-MMP-9, and anti-β-actin (Bioss, London, UK). The immunoblots on the membranes were developed with the enhanced chemiluminescence reagent. The band intensity was determined by densitometric analysis using IMAGEJ software for relative quantification of protein levels by normalized with β-actin in the tumor.
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7

Protein Quantification and Western Blotting

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Bidicinchoninic acid (BCA) kit provided by Beyotime Biotechnology (Shanghai, China) was adopted to assay the protein that was isolated from LC cells. Using SDS-PAGE (10%), the protein was then extracted and converted onto PVDF membranes provided by Millipore (Billerica, MA, USA). Next, primary antibodies were applied to the membranes overnight at 4°C using 5% skimmed milk. The antibodies are as follows: anti-Bax (1: 2, 000, bs20337R, Bioss, Woburn, MA, USA), anti-Bcl-2 (1: 2, 000, bs20352R, Bioss, Woburn, MA, USA), anti-Cleaved caspase-3 (1: 2, 000, bs33199M, Bioss, Woburn, MA, USA), anti-MMP-2 (1: 2, 000, bs20705R, Bioss, Woburn, MA, USA), anti-MMP-9 (1: 2, 000, bs7095R, Bioss, Woburn, MA, USA), anti-PYCR2 (1: 2, 000, bs19690R, Bioss, Woburn, MA, USA) and anti-β-actin (1: 2, 000, bs0061R, Bioss, Woburn, MA, USA), with β-actin which was treated as the endogenous control. In the next step, membranes were further incubated with a secondary antibody (1: 2,000, b-0311P-HRP, Bioss, Woburn, MA, USA) for an additional hour. Subsequently, protein blots were viewed using ECL (Millipore, Billerica, MA, USA).
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8

Investigating Inflammatory Pathways in Cells

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IL-1β was obtained from T&L Biotechnology Co., LTD. (Beijing, China). DMEM medium and FBS were obtained from Genetime Biotechnology Co., Ltd. (Shanghai, China). Primescript™ reverse transcription kit and SYBR® Premix Ex Taq™ II were purchased from TransGen Biotech (Beijing, China). Antibodies including anti-MMP-1, anti-MMP-3, anti-MMP-9, anti-ADAMS-4, anti-ADAMS-5, anti-collagen, anti-aggrecan, anti-iNOS, anti-COX-2, anti-p-p38, anti-p-ERK1/2, and anti-p-p65 were all obtained from Bioss Biotechnology Co., Ltd. (Beijing, China). GAPDH was purchased from Abcam Inc. (Cambridge, U.K.). The sequences of primers used in the present study was obtained from Tsingke (Beijing, China). ELISA kits were purchased from MSKBIO Technology Ltd. (Wuhan, China).
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9

Histological Analysis of Atherosclerotic Plaques

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The rabbits and mice were euthanized with an overdose of 3% sodium pentobarbital (160 mg/kg i.p.). The rabbit right femoral arteries and mouse hearts containing advanced plaques were prepared as previously described [18 (link)]. Hematoxylin and eosin (H&E) staining was performed for plaque and lumen areas in rabbits as well as for plaque area in mice. Masson’s trichrome staining was performed to determine the collagen content. Immunohistochemical staining was performed to detect macrophages (for rabbits: anti-RAM-11, 1:1200, Dako, Cat#M0633; for mice: anti-CD68, 1:50, Abcam, Cat#ab955), SMCs (for rabbits: anti-α-actin, 1:2000, Sigma, Cat#A2547; for mice: anti-α-actin, 1:500, Abcam, Cat#ab5694), MMP-2 (for rabbits: anti-MMP-2, 1:400, Bioss, Cat#bs-4605R; for mice: anti-MMP-2, 1:50, Abcam, Cat#ab37150), and MMP-9 (for rabbits: anti-MMP-9, 1:400, Bioss, Cat#bs-4593R; for mice: anti-MMP-9, 1:50, Abcam, Cat#ab38898). Images of the stained sections were obtained using an Olympus IX70 microscope (Olympus, Tokyo, Japan). The amount of collagen, macrophages, SMCs, MMP-2, and MMP-9 were measured using computer-assisted color image analysis software (Image-Pro Plus, version 6.0, Media Cybernetics, Inc., Silver Spring, MA, USA).
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10

Investigating Molecular Mechanisms in Cancer

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Digoxin was purchased from Aladdin (London, Ontario, Canada). Doxorubicin was obtained from Dalian Meilun Biological Product Factory (Dalian, Liaoning, China). Cisplatin and verapamil were purchased from Energy Chemical (Shanghai, China). Anti-CyclinD1, anti-Cdc2, anti-CyclinB1, anti-HIF1α, anti-p-Rb (phospho S780), and anti-β-actin antibodies, as well as anti-mouse and anti-rabbit horseradish peroxidase (HRP)-conjugated secondary antibodies, were obtained from Cell Signaling Technology (Danvers, MA, USA). Anti-p21 was purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Anti-p-Integrinβ1 (phospho T788+T789) was from Abcam (Cambridge, MA, USA). Anti-MMP2 and anti-MMP9 were obtained from Bioss (Beijing, China). Matrigel and Annexin V-fluorescein isothiocyanate/propidium iodide (Annexin V-FITC/PI) apoptosis-detection kits were from BD Biosciences (San Jose, CA, USA). Propidium iodide (PI) was from Sigma-Aldrich (St. Louis, MO, USA). Human VEGF-A kit was purchased from Jianglai biotech (Shanghai, China). 3-(4,5-dimethyl-2-thiazolyl)-2,5-diphenyl-2-H-tetrazolium bromide (MTT) reagent was from Amresco (Solon, OH, USA).
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