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Anti klf5 antibody

Manufactured by Abcam

Anti-KLF5 antibody is a lab equipment product that can be used for the detection and analysis of the KLF5 protein. KLF5 is a transcription factor involved in various cellular processes. This antibody can be utilized in techniques such as Western blotting, immunohistochemistry, and immunocytochemistry to study the expression and localization of KLF5.

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5 protocols using anti klf5 antibody

1

Chromatin Immunoprecipitation Profiling of KLF5 Transcription Factor

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Approximately 1 × 106 Lgr5EGFPhi cells pooled from 2–4 mice were used for ChIP-PCR. ChIP was performed as previously described,62 (link) with a few modifications. Cells were cross-linked for 15 minutes with 1% formaldehyde, and cross-linking was stopped by adding glycine at a final concentration of 125 mM. Cells were washed once with cold phosphate-buffered saline. Chromatin digested with micrococcal nuclease was incubated with 1.5 μg of anti-KLF5 antibody (Abcam, Cambridge, United Kingdom) or rabbit IgG (Abcam), precipitated using Protein A– and Protein G–coated Dynabeads (Thermo Fisher Scientific). Beads were washed 6–8 times. Immunoprecipitated chromatin fragments were reverse cross-linked in elution buffer (0.1M NaHCO3, 1% sodium dodecyl sulfate) with NaCl and RNase A at 65°C for 4 hours. DNA was treated with Protease A for 1 hour at 60°C, extracted using UltraPure Phenol:Chloroform:Isoamyl Alcohol (25:24:1, v/v) (Thermo Fisher Scientific) in MaXtract High Density tubes (Qiagen), and purified using Agencourt Ampure XP DNA purification kit (Beckman Coulter, Brea, CA). Potential binding sites for KLF5 were identified using Eukaryotic Promoter Database63 (link) and JASPAR CORE 2018 vertebrate.34 (link) The list of the primers used in this study is provided in Table 2.
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2

RNA Binding Protein Interaction Assays

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The RIP assays and RNA pull-down assay were conducted as previously shown in a study (18 (link)). Based on the manufacturer’s protocol, the RIP analysis was conducted using an EZ-Magna RIP Kit (17-701, Millipore). The quantitative RT-PCR was used to detect the purified, immunoprecipitated RNA and input genomic RNA. Biotin-labeled RNA was transcribed using the T7 RNA polymerase (Roche 10881775001) and Biotin RNA Labeling Mix (Roche 11685597910), mixed with recombinant DNase I (Roche 04716728001) and purified using an RNeasy Mini Kit (74904; Qiagen, Hilden, Germany). The NE-PER® Nuclear and Cytoplasmic Extraction Reagents (78833; Pierce, Waltham, MA, USA) was used to extract the nuclear proteins were extracted from cells. The biotin-labeled were mixed with RNA cell nuclear extracts and washed streptavidin agarose beads (Sigma-Aldrich, St. Louis, MO, USA) and then added to each reaction. Five micrograms of anti-KLF5 antibody (ab237635, Abcam) were utilized to pull down RNA. The Flag-MS2bp-MS2bs system was used to perform the RNA pull-down assay. The bound proteins were analyzed by western blotting assay.
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3

Western Blot Analysis of KLF5 Protein

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Proteins were extracted by Pierce RIPA buffer (Thermo Fisher Scientific, Inc.) and the concentrations were measured using Pierce BCA protein assay kit (Thermo Fisher Scientific, Inc.). Thirty microgram each of proteins were, then, denatured by NuPAGE™ LDS Sample Buffer, separated by NuPAGE® Bis-Tris gel electrophoresis (4-12% gradient; Thermo Fisher Scientific, Inc.), and transferred to polyvinylidene fluoride membranes using the iBlot Dry Blotting System (Thermo Fisher Scientific, Inc.). After blocking with 5% skim milk in TBST for 1 h at room temperature, the membrane was incubated with anti-KLF5 antibody (1:1,000 dilution, #ab137676; Abcam) at 4°C overnight followed by horseradish peroxidase-conjugated secondary antibody (#7074; Cell Signaling Technology) at room temperature for 2 h. Signal from the protein bands were visualized using the ECL western blotting detection system (Bio-Rad Laboratories). β-actin (1:10,000 dilution, #MB1051R; Merck) was used as the loading control.
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4

Quantification of KLF5 and α-SMA Protein Levels

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Cells were seeded in 60 mm dishes at a density of 1 × 105 /ml. At 90 % confluence, the cells were treated with various concentrations of H2O2 (Wako, Osaka, Japan) or ONOO (Calbiochem, La Jolla, CA). To obtain the nuclear fractions, a Nuclear Extraction Kit (Active Motif, Carlsbad, CA) was used according to the manufacturer’s instructions. The cells were washed with ice-cold PBS and homogenized in cell lysis buffer. Equal amounts of protein were loaded and separated by electrophoresis on 12 % SDS polyacrylamide gels. The separated proteins were transferred to a polyvinylidene difluoride membrane (Bio-Rad Laboratories, Hercules, CA). The following antibodies were used for detection of the target proteins: rabbit polyclonal anti-KLF5 antibody (1:1000 dilution, Abcam), mouse monoclonal anti-β-actin antibody (1:4000 dilution, Sigma-Aldrich, St. Louis, MO), mouse monoclonal anti-lamin A/C antibody (1:400 dilution, Santa Cruz Biotechnology, Dallas, TX), mouse monoclonal anti-α-SMA (1:5000 dilution, Sigma-Aldrich). Bound antibodies were visualized using the appropriate peroxidase-conjugated secondary antibodies and enhanced chemiluminescence (GE Healthcare Life Sciences, Buckinghamshire, UK) with a chemiluminescene imaging system (LAS-4000 mini, Fujifilm, Tokyo, Japan). Band intensity was quantified by densitometry (Quantity One, Bio-Rad Laboratories).
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5

Immunoblotting Analysis of KLF5 in B-cell Precursors

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FACS sorted purified B-cell precursors or ALL cell line cells were lysed in radioimmunoprecipitation assay (RIPA) buffer and extracts were electrophoresed on SDS-PAGE. For immunoblotting, separated proteins were transferred to a PVDF membrane. The membrane was then blocked with 5% non-fat milk in tris-buffered saline (TBS) for one hour at room temperature (RT). A guinea pig anti-KLF5 antibody [31 (link)] (1:4000) was used for mouse samples, anti-KLF5 antibody (Abcam, Cambridge, MA, Catalog # ab24331,1:1000) for human ALL cell line samples, c-Abl antibody (Cell Signaling Technology, Catalog # 2862, 1:1000), Gstm1 antibody (Santa Cruz Biotechnology, Catalog # sc-133641, 1:500) was added separately and incubated overnight at 4°C. Mouse anti-β-actin antibody (Sigma) was added as a loading control. The filters were washed, incubated with a secondary anti-mouse, rabbit or guinea pig HRP-conjugated antibody for one hour at room temperature and the bands were visualized using enhanced chemiluminescence (Amersham ECL, GE Healthcare).
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