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4 protocols using parthenolide

1

Optimization of Inhibitor Screening Protocol

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Drug FGF401 was purchased from CASYMCHEM; BLU-554, Geldanamycin, Imatinib, LY-294002, Parthenolide, Tanespimecin, Trichostatin A and Vorinostat were purchased from MedChemExpress. Drug details have shown in Supplementary Table S2. Antibodies FGFR4, p-ERK 1/2 and ERK 1/2 were purchased from Abclonal; Antibodies FGFR4, p-AKT (T308) and AKT were purchased from Cell Signaling Technology; Antibodies FGF19 and KLB were purchased from Abcam. HRP labeled goat anti rabbit IgG (H + L) and HRP labeled goat anti mouse IgG (H + L) were purchased from Beyotime. Antibodies details have shown in Supplementary Table S3.
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2

Staphylococcus aureus LTA Signaling Pathways

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LTA from staphylococcus aureus, CBHA, doxycycline and all other reagents were procured from Sigma-Aldrich (St. Louis, MO, USA). All antibodies were obtained from Abcam (Cambridge, MA, USA), except that for PAI-1 (BD Biosciences, San Jose, CA, USA). LY294002, parthenolide, SB203580, SP600125, PD98059 were acquired from MedChemExpress (Monmouth Junction, NJ, USA).
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3

Parthenolide Modulates EGFR-ERK-AKT Signaling

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Parthenolide was purchased from MedChemExpress (cat# HY-N0141) and dissolved in DMSO. The Annexin V-FITC/PI staining kit was was purchased from Thermofisher (cat#88-8005-72). The antibodies for western blot are as followings: primary antibodies against phospho-EGFR (cat#3777), total-EGFR (cat#4267), phospho-ERK (cat#4377), total-ERK (cat#4695), phospho-AKT(T473) (cat#4060), phospho-AKT(T308) (cat#13,038), AKT (cat#9272), cleaved-caspase-3 (cat#9661), PARP (cat#9532), Ki-67(cat#9027), HRP goat anti-rabbit (cat#7074) and-mouse secondary antibodies (cat#5127) and GAPDH (cat#5174) were purchased from CST Cell Signaling Technology.
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4

Murine MCT cells as a model for kidney injury

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Murine MCT cells are a well-characterized cell model of kidney tubular epithelium suitable to study molecular mechanisms of kidney injury (Haverty et al., 1988 (link)). MCT cells were grown in RPMI 1640 (GIBCO, Grand Island, NY) supplemented with 10% decomplemented fetal bovine serum (DFBS), 2 mM glutamine, 100 U/mL penicillin, and 10 mg/ml streptomycin, in 5% CO2 at 37°C. For experiments, cells were stimulated with 100 ng/ml human TWEAK; 0.01 to 100 mUI/ml IFNα and IFNβ (R&D Systems Inc.); the cytokine mixture made of 100 ng/ml human TWEAK, 30 ng/ml TNFα, and 30 U/ml interferon-γ (IFNγ, PeproTech) or LPS (100 ng/ml, Merck). The following chemical inhibitors were used: 10 μM PF-06700,841 tosylate salt (Sigma-Aldrich, Merck); 50 μM amlexanox; 10 μM Parthenolide, and 2.5 μM IKK16 (MedChemExpress). All the inhibitors were added to cultured cells 1 h before the stimuli. Stock solutions of the stimuli and inhibitors were made according to the specified manufacturers’ instructions. Cells were also treated with the IFNAR neutralizing antibody for 3 h before the stimuli.
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