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19 protocols using ab215188

1

Protein Extraction and Western Blot Analysis

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Total protein was extracted from tissues by RIPA lysis buffer (Beyotime), 10 μL PMSF and 10 μL phosphatase inhibitor. SDS-PAGE gel electrophoresis was utilized to separate the extracted protein. The protein was transferred to polyvinylidene fluoride membrane. After blocking with 50 g/L BAS for 1 h, the membrane was incubated with primary antibodies against HTR2B (1/3000; ab227722; Abcam, Cambridge, MA, United States), SLC5A3 (1/1000; ab113245), GAPDH (1/3000; ab8245), TNF-α (1/1000; ab215188), IL-1β (1/1000; ab200478), TGF-β (9ab208156) and IL-4 (1/1000; ab34277) at 4°C overnight. After washing the membrane with TBST, the membrane was incubated with secondary antibody (1/5000; ab7097) for 1.5 h. The ultra-sensitive ECL chemiluminescence kit was used to configure the luminescence buffer, and the band was developed.
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2

Quantification of Inflammatory Cytokines in HFLS Cells

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HFLS cells were lysed with RIPA lysate (Beyotime). Total proteins were separated by sodium dodecyl sulfate‐polyacrylamide gel electrophoresis and transferred onto polyvinylidene fluoride membranes (Millipore). The membranes were incubated with 5% skimmed milk for 1 h, and incubated overnight at 4℃ with primary antibodies against interleukin‐1β (IL‐1β) (1:1000, ab216995; Abcam), interleukin‐6 (IL‐6) (1:1000, ab233706; Abcam), tumour necrosis factor‐α (TNF‐α) (1:1000, ab215188; Abcam), and GAPDH (1:1000, ab8245; Abcam). After washing, the membranes were incubated with a secondary antibody (1:5,000; Biotech) at room temperature for 4 h. The signals were developed using Pierce ECL Western Blot Substrate (Thermo Fisher Scientific), imaged, and analyzed with GAPDH as the control using ImageJ software.
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3

Macrophage TNFα Response to Oxygen MSC CGMs

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RAW264.7 macrophage cells (ATCC TIB-71) were cultured in DMEM supplemented with 10% (v/v) FBS and 1% penicillin/streptomycin. The cultures were maintained at 37°C in a humidified 5% CO2 atmosphere. For LPS stimulation, RAW264.7 cells were seeded in a 6-well plate at a density of 200,000 cells per well and cultured up to 70–80% confluency. Then, the cells were washed three times with HBSS, followed by 30 min treatment with LPS at a concentration of 100 ng per mL in serum-free medium or with serum-free medium alone as a negative control. Subsequently, the LPS-activated cells were thoroughly washed with HBSS and incubated with 5% and 21% oxygen MSC CGMs for 24 h. The cells without activation were cultured in the same non-conditioned medium.
Next, the cells were washed three times with cold PBS, harvested, and fixed in 0.01% paraformaldehyde for 10–15 min at 4 °C. Afterwards, the cells were permeabilized with 0.2% Tween in PBS for 10 min at room temperature, washed and blocked with 10% FBS in PBS for 20 min, and stained with primary anti-TNFα antibody (ab215188, Abcam, Cambridge, UK) and secondary antibody conjugated with Alexa 647 (ab269823, Abcam, Cambridge, UK). After the staining, the cells were washed three times with PBS to remove unbound secondary antibodies and resuspended in PBS for flow cytometry analysis using CytoFLEX (Beckman Coulter, Brea, CA, USA).
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4

Protein Expression Analysis by Western Blot

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Protein extraction was described by (Luo et al., 2021 (link)). Sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) was used to separate 20 µg of proteins from each sample, which was then placed onto a polyvinylidene fluoride (PVDF) membrane. Before the primary antibody incubation at 4°C overnight, the membranes were blocked with 5% milk for 2 h. The following primary antibodies were then used: P2X3 (Abcam, ab300493), IL-1 (Abcam, ab283818), GAPDH (Abcam, ab9485), TNF-α (Abcam, ab215188), and IL-6 (Abcam, ab290735). Horseradish peroxidase (HRP)-conjugated secondary antibody was applied to the blotted PVDF membrane following the primary antibody reaction (Boster Biological Technology Co. Ltd.). The ECL chemiluminescence western blot detection technique was carried out via the use of a gel imaging device and ImageJ.
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5

Western Blot Analysis of Synaptic and Inflammatory Proteins

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The tissues were homogenized in ice-cold RIPA lysis buffer (Beyotime, Shanghai, China) and supplemented with complete EDTA-free protease inhibitor cocktail and PhosSTOP Phosphatase Inhibitor. The protein samples were mixed with 5 × dual color protein loading buffer (Fudebio, Hangzhou, China) and boiled at 98 °C for 10 min. Equal amounts of protein (30 μg/lane) were loaded on a SDS-PAGE gel at a constant voltage and then transferred to a polyvinylidene difluoride membrane (Millipore, MA, USA). After being blocked and incubated with the primary and secondary antibodies, the bands were visualized using a chemiluminescence image analysis system (Tanon, Shanghai, China) with FDbioFemto ECL (Fudebio, Hangzhou, China). The band intensities were quantified using Gel-Pro Analyzer software (Media Cybernetics, Maryland, USA). The primary antibodies were included the following: synaptosomal associated proteins 25 (SNAP-25; Abcam, ab109105), postsynaptic density proteins 95 (PSD-95; CST, 3450), Ibα1 (Abcam, ab178846), TNF-α (Abcam, ab215188), IL-6 (Abcam, ab233706), NLRP3 (Abcam, ab263899), IL-18(Abcam, ab243091), IL-1β (Abcam, ab254360), caspase-1 (Abcam, ab207802), TLR4 (Abcam, ab22048), myeloid differentiation factor 88 (MyD88; Abcam, ab133739), NF-κB p65 (Abcam, ab32536), GAPDH (ABclonal, AC033), ZO-1 (ABclonal, A11417), occludin (ABclonal, A12621) and β-actin (ABclonal, AC026).
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6

Western Blot Analysis of Neuroinflammatory Markers

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Total protein of cells and hippocampus samples was extracted using RIPA solution. Denatured protein was separated by sodium dodecyl sulphate‐polyacrylamide gel electrophoresis and then transferred onto nitrocellulose membranes (Millipore, USA), which were blocked and then incubated with SENP1 (1:1000, ab236094, Abcam), SUMO‐1 (1:1000, sc‐5308, SANTA), NF‐κB p65 (1:1000, ab239882, Abcam), IκB‐α (1:1000, ab32518, Abcam), NEMO (1:1000, ab178872, Abcam), IL‐1β (1:1000, ab234437, Abcam), TNF‐α (1:1000, ab215188, Abcam) and β‐actin (1:1000, ab179467, Abcam) primary antibodies at 4° overnight. The membranes then were further incubated with secondary antibodies. The bands were visualized using the enhanced chemiluminescence system (Millipore). The bands’ density was quantified with ImageJ software (NCIH) and normalized to that of β‐actin.
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7

Fluorescent Peptide Synthesis and Evaluation

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Amino acids, 2-(naphthalene-2-yl) acetic acid, and O-(benzotriazole-1-yl)-N,N,N,N-tetramethyluronium hexafluorophosphate (HBTU) were purchased from Bidepharm (Shanghai, China). 1-Pyrenemethylamine hydrochloride and trifluoroacetic acid (TFA) were obtained from Energy Chemical (Beijing, China). 2-Cl-Trityl chloride resin was bought from Nankai Resin Co. Ltd (Tianjin, China). N,N-Diisopropylethylamine (DIEA) was purchased from J & K (Beijing, China). Glycine, phenylalanine, tyrosine, and methotrexate were bought from Bidepharm (Shanghai, China). Cy5.5 NHS ester was obtained from APExBIO (USA). ELISA kit for IL-6 was bought from MSKBIO (China). Matrigel was bought from Corning (USA). Tubulin, iNOS, IL-6, and TNF-α antibodies used in western blot were purchased from Abcam (ab7291, ab178945, ab259341, and ab215188, respectively). In immunofluorescence staining, F4/80 was obtained from Bioss (bsm-34028 ​M), iNOs was obtained from Proteintech (18985-1-AP), CD206 was obtained from Abcam (ab64693), CD31 was brought from Servicebio (GB11063-2). DAPI was obtained from Beyotime Biotechnology (Shanghai, China). Commercially available reagents were used without further purification.
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8

Astrocyte Protein Expression Analysis

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Forty-eight hour after restoration of OGD, primary cultured astrocytes were harvested and lysed with lysis buffer (1% NP-40, 50 mM Tris HCl, pH 8.0, 150 mM sodium chloride) supplemented with protease and phosphatase inhibitor cocktails. Protein concentration was determined using the BCA protein assay kit (Eppendorf-Bio photometer, Germany). Western blotting and semi-quantitative analyses were performed as described previously [13 (link), 14 (link)]. The following primary antibodies were purchased from Invitrogen (Carlsbad, CA, USA): rabbit anti-nuclear factor-κB (NF-κB) polyclonal antibody (51-3500, 1:1000), rabbit anti p-NF-κB polyclonal antibody (PA5-37658, 1:1000). Rabbit anti KLF4 polyclonal antibody (11880-1-AP, 1:1000) was gotten from Proteintech (Rosemont, IL). Rabbit anti S100A10 monoclonal antibody (ab232524, 1:1000), rabbit anti C3 monoclonal antibody (ab200999, 1:2000), rabbit anti TNF-α monoclonal antibody (ab215188, 1:1000), and rabbit anti iNOS polyclonal antibody (ab283655, 1:1000) were obtained from Abcam (Cambridge, MA). β-Actin were obtained from Neomarker (1:1000, Fremont, CA). Within each sample, the levels of proteins were first normalised to the level of β-actin, and then expressed as the fold-increase over the level of NO-OGD/R siRNA-Ctl or mock-treated group.
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9

Macrophage Protein Expression Analysis

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The macrophages in each group were collected, from which the total proteins were extracted, and their concentrations were detected through BCA method. Then, the extracted proteins were mixed well with 4×loading buffer and boiled in a metal bath at 100°C for 10 min, followed by SDS-PAGE. Next, the proteins were transferred to a PVDF membrane and incubated at 4°C overnight against the primary antibodies: IL-6 (Abcam, ab233706, 1:1000), Arginase-1 (Abcam, ab133543, 1:1000), IL-1β (Abcam, ab254360, 1:1000), tumor necrosis factor-α (TNF-α, Abcam, ab215188, 1:1000), p-phosphatidylinositol 3-kinase (p-PI3K, Abcam, ab278545, 1:1000), p-protein kinase B (p-AKT, Abcam, ab38449, 1:800), cluster of differentiation 9 (CD9, Abcam, ab236630, 1:1000), CD81 (Abcam, ab109201, 1:5000), CD63 (Abcam, ab134045, 1:5000) and GAPDH (Abcam, ab8245, 1:5000). After rinsing, they were incubated in the secondary antibody working solution of horseradish peroxidase-labeled goat anti-rabbit IgG (Abcam, ab97080, 1:5000) at room temperature for 2 hours. Subsequently, exposure and development were performed with enhanced chemiluminescent (ECL) solution, and the corresponding gray value was measured via Image J software.
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10

Molecular Mechanisms of YFBD in IBD

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Dextran sulfate sodium (DSS, 36–50 kDa) was purchased from MP Biomedicals (CA, USA). Primary antibodies against p-PI3K (#4228), Akt (#4691), and p-Akt (#4060) were purchased from Cell Signaling Technology (MA, USA). Primary antibodies against TLR4 (ab13867), NF-κB/p65 (ab32536), p-NF-κB/p65 (ab28856), IκBα (ab32518), β-actin (ab6276), IL-6 (ab233706), IL-1β (ab216995), TNF-α (ab215188), as well as HRP-conjugated goat anti-rabbit/mouse IgG (ab150077, ab205719) and goat anti-rabbit IgG H&L Alexa Fluor 488/555(ab150077, ab150078), were purchased from Abcam (MA, USA). Primary antibody against p-IκBα (AP0707) was purchased from ABclonal Biotechnology (Wuhan, China). Lipopolysaccharide (LPS) was purchased from Sigma (MO, USA). The three medicinal herbs in YFBD (C. lacryma-jobi L., Radix Aconiti Lateralis Preparata, and P. scabiosaefolia Fisch.) were purchased from Beijing Tong Ren Tang Co., Ltd. (Suzhou, China). Sulfasalazine (SASP) was purchased from Shanghai Sine Tianping Pharmaceutical Co., Ltd. (Shanghai, China).
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