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28 protocols using p fak

1

Immunoblotting Analysis of Epithelial-Mesenchymal Transition

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Analytical 12% SDS-PAGE was performed, and 30 μg of protein were analyzed for each condition, unless otherwise stated. For immunoblotting, proteins in the SDS gels were transferred to a polyvinylidene difluoride membrane using an electroblot apparatus. Antibodies against human fibronectin (Santa Cruz Biotechnology, Inc., Santa Cruz, CA), FAK (Cell Signaling Technology, Danvers, MA), p-FAK (Epitomics, Burlingame, CA, USA), N-cadherin (Epitomics, Burlingame, CA, USA), E-cadherin (Epitomics, Burlingame, CA, USA), Snail1 (bs-1371R; Bioss, Boston, MA, USA), COX-2 (Lab Vision Corp., Fremont, CA), c-Jun (Santa Cruz Biotechnology), AKT and p-AKT (both from Cell Signaling Technology, Danvers, MA), p-Rac1/cdc42 (Cell Signaling Technology), and α-tubulin and β-actin (both from Sigma-Aldrich) were used as the primary antibodies. Mouse or rabbit IgG antibodies coupled to horseradish peroxidase were used as secondary antibodies. An enhanced chemiluminescence kit (Supersignal West Pico Chemiluminescence kit; Pierce, Rockford, IL) was used for detection. The FAK inhibitor Y15 was purchased from Sigma-Aldrich (St. Louis, MO).
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2

Molecular Mechanisms of Antifibrotic Compounds

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Curcumin, Y15, 15d-PGJ2 and PD68235 were obtained from Sigma-Aldrich (St Louis, MO, USA). U0126 was obtained from Cell Signaling Technology (Danvers, MA, USA). Imatinib and fasudil were obtained from Nanjing EnoGene Biotechnology (Nanjing, China). Rapamycin was obtained from Xi'an Helin Biological Engineering (Xi'an, China). All these compounds were dissolved in dimethylsulfoxide (DMSO; Sinopharm Chemical Reagent Co., Ltd., Shanghai, China) for experiments. Recombinant rat PDGF was obtained from Cell Sciences (Canton, MA, USA). Primary antibodies against VEGF, p-PI3K, PI3K, p-AKT and AKT were obtained from Nanjing EnoGene Biotechnology (Nanjing, China). Primary antibodies against α-smooth muscle actin (α-SMA), α(I) procollagen, fibronectin, p-PDGF-βR, PDGF-βR, p-FAK, FAK, GTP-RhoA and total-RhoA were obtained from Epitomics (San Francisco, CA, USA). Primary antibodies against PPAR-γ, p-ERK and ERK were obtained from Cell Signaling Technology. Primary antibodies against HIF-1α, VEGF-R2, p-mTOR, mTOR, p-p70S6K, p70S6K and β-actin were obtained from Bioworld Technology (Nanjing, China).
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3

Ubenimex and 5-FU Synergistic Anti-Cancer Effects

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Ubenimex was purchased from Shenzhen Main Luck Pharmaceutical, Inc. (Shenzhen, China), and 5-FU was obtained from Xudong Haipu Pharmaceutical Co., Ltd. (Shanghai, China). Rabbit monoclonal antibodies against ANPEP (CD13; Abcam Biotechnology, Cambridge, USA; cat. no. ab108382), LC3B (Abcam; cat. no. ab192890), Bax (ABclonal Technology Co., Ltd., Wuhan, China; cat. no. A19684), p-FAK (Abcam; cat. no. ab81298), Rabbit polyclonal antibodies against EMP3 (Abcam; cat. no. ab236671), PTK2 (Sangon Biotech Co., Ltd., Shanghai, China; KleanAB; cat. no. P102163), NF-κB P65 (Proteintech, Rosemont, IL, USA; cat. no. 10745-1-AP), P62/SQSTM1 (Proteintech; cat. no. 18420-1-AP), Beclin-1 (Proteintech; cat. no. 11306-1-AP), ATG5 (Proteintech; cat. no. 10181-2-AP), Bax (Proteintech; cat. no. 50599-2-Ig), Bcl-2 (ABclonal; cat. no. A0208 and Proteintech; cat. no. 12789-1-AP), GAPDH (ABclonal; cat. no. AC001). All secondary antibodies (cat. no. SA00001-2) were purchased from Proteintech Biosciences.
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4

Protein Expression Analysis of Cell Lines

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Cells were lysed with lysis buffer (Roche), with 10% phosphor STOP and 10% protease inhibitor cocktail. Cell lysates were then collected after centrifugation at 12,000 rpm for 10 m at 4°C. 30μg of lysate protein was loaded and total cellular protein was separated with 8% SDS-polyacrylamide gel electrophoresis, then transblotted onto NC membrane (Life Technology). The membrane was probed with anti-ZIP4 (Proteintech, 1:2000), ZO-1, claudin-1, ZEB1(Cell signaling Technology 1:500), pFAK, FAK (Abcam, 1:1000), pPaxillin, Paxillin (Life tech, 1:1000), and anti-β-actin (Abcam, 1:10000) antibody at 4 °C overnight, and then washed three times with 0.1% Tween 20-TBS and incubated with horseradish peroxidase-linked or NIR-coupled secondary antibody (1:5000) for 2 h at room temperature. The membrane was washed three times with 0.1% Tween 20-TBS. The immunoreacted bands were detected using an enhanced chemiluminescent (ECL) plus reagent kit. We are using the Li-COR Odyssey Fc machine to detect both ECL and the NIR-labeled 2nd antibodies.
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5

Western Blot Analysis of Focal Adhesion Proteins

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Cells were washed with PBS and lysed in Laemmli Sample Buffer (Bio-Rad) and further homogenized with a rotorstator homogenizer. Proteins were isolated and concentrations were determined using the BCATM Protein Assay Kit (Thermo Scientific). 80–120 µg proteins were loaded on a 12–15% sodium dodecyl sulfate-polyacrylamide gel. After electrophoresis, proteins were transferred to a PVDF Western Blotting membrane (Roche). Membrane were blocked with 5% nonfat dried milk (in TBST) for 2 h at room temperature and then incubated overnight at 4°C with Primary antibody (p-FAK, FAK, p-Src, Src, paxillin, vinculin, and talin were purchased from abcam, cleaved-caspase3, caspase3 and β-actin were purchased from Cell Signaling Technology).The membrane was subsequently washed with TBST (5 min×3) and incubated with horseradish peroxidase-conjugated secondary antibodies (Cell Signaling Technology) for 1 h at room temperature. After washing with TBST (5 min×3), bands were detected by enhanced chemiluminescence substrate (Applygen). Band intensities were normalized to its respective internal standard signal intensity. The experiment was repeated 6 times.
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6

Protein Expression Analysis by Western Blot

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To detect the proteins levels, isolation of extracted proteins was performed utilizing SDS‐PAGE, and then, the separated samples were transferred to PVDF membranes incubated in 5% skim milk. Next, these membranes were mixed with primary antibodies at 4°C overnight, mainly containing E‐cadherin (ab76055, 1:200), N‐cadherin (ab76011, 1:5000), vimentin (ab92547, 1:2000), CYBRD1 (ab66048, 1 ug/mL), p‐FAK (ab81298, 1:1000), t‐FAK (ab40794, 1:2000), p‐Paxillin (ab109547, 1:5000), and t‐Paxillin (ab32084, 1:3000) obtained from Abcam (UK) and then were cultured with corresponding secondary antibody conjugated by horseradish peroxidase. Finally, the measurement was conducted employing chemiluminescence system (Bio‐Rad).
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7

Immunohistochemical Analysis of Pancreatic Cancer

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Human pancreatic adenocarcinoma and surrounding benign tissues were collected and processed into 5-μm slides. Fixed tissue slides were incubated in 3% hydrogen peroxide solution to quench endogenous peroxidase activity for 15 m and were subsequently washed with PBS. The slides were then incubated in blocking buffer for 30 m at room temperature and stained with anti-hZIP4 antibody (Proteintech, 1:500), ZO-1 (NOVUS,1:100), claudin-1 (1:100, Cell Signaling Technology), ZEB1 (1:250, Sigma) and incubated overnight at 4°C. After washing with PBS, the section was incubated with polymer secondary antibody for 30 m (Vector Laboratories). Immune complexes were detected with diaminobenzidine (DAB) under a phase-contrast microscope. The sections were then mounted and observed under a phase-contrast microscope. The slides were scanned using Aperio scanning software and the positivity was analyzed automatically. The KPC mouse sections were obtained from Dr. Courtney Houchen. ZIP4, ZO-1 (Proteintech), claudin-1 (Proteintech), ZEB1 (Sigma), pFAK (Abcam) and pPaxillin (Lifetech) were stained in pancreatic cancer tissue of KPC mouse sections as above.
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8

Immunohistochemical Analysis of Rat Heart Tissue

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Paraffin sections of rat heart were incubated overnight with the anti-angiotensin II type-1 receptor antibody (AT1R, 1:100 dilution, Proteintech, 25343-1-AP, Chicago, IL, USA), the anti-focal adhesion kinase (phospho Y397) antibody (p-FAK, 1:800 dilution, Abcam, ab81298, Cambridge, UK), anti-focal adhesion kinase antibody (FAK, 1:800 dilution, Abcam, ab40794, Cambridge, UK) and NOX2 rabbit polyclonal antibody (1:400 dilution, Servicebio, Wuhan, China) at 4 °C and subsequently washed with PBS for three times. Then, the sections were incubated with second antibodies includes: IgG-horseradish peroxidase (HRP) (1:100; Dako, Wuhan, China; P0448, Copenhagen, Denmark) and Alexa Fluor-488 goat anti-rabbit antibody (1:500 dilution, Servicebio, Wuhan, China) at room temperature for 1 h. Finally, the sections were incubated with 4′,6-diamidino-2-phenylindole (DAPI). After dying, 3,3′ diaminobenzidine tetrahydrochloride (DAB) horseradish peroxidase Color Development Kit (Hat Biotechnology, Wuhan, China; IS015) was used for chromogenic development. Microphotographs were acquired and analyzed with fluorescence microscopy (ECLIPSE C1, Nikon, Tokyo, Japan). The analysis of the fluorescence area was performed using CaseViewer2.4 software.
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9

Protein Expression Profiling in Cardiac Cells

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Hearts, NRCMs and CFs were lysed using RIPA to extract the total protein and concentration of protein was determined using a BCA Protein Assay kit (TaKaRa). The samples were analysed with 8%‐15% SDS‐PAGE gels and transferred to 0.45‐μm PVDF membranes (Millipore). The membranes were blocked with 5% BSA and incubated with primary antibodies: KCNH2 (ab136467; 1:1000), FOXO3A (ab17026; 1:1000), BCL‐2 (ab59348; 1:1000), p‐AKT (ab81283; 1:1000), AKT (ab179463; 1:1000), p‐FAK(ab81298; 1:1000) and FAK (ab40794; 1:1000) (Abcam); BIM (Cell Signaling Technology, 2933T, 1:1000); PUMA (Santa Cruz Biotechnology, USA,sc‐374223, 1:100); GAPDH (Proteintech, 60004‐1‐lg, 1:1000) was applied as a loading control. The membranes were then incubated with secondary antibodies anti‐mouse (sa00001‐1), anti‐rabbit (sa00001‐2) (Proteintech) and imaged with Amersham Imager 600 or ImageQuant LAS 4000.
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10

Signaling Pathways Analysis in Cell Lines

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JWH-015 and SR144528 were purchased from Tocris Bioscience. Antibodies used were P-AKT, E-cadherin (Cell Signaling), P-ERK, ERK, AKT, GAPDH, P-EGFR, EGFR, VCAM-1, STAT3 (Santa Cruz), N-cadherin, P-FAK (Abcam), P-STAT3 (BD Biosciences).
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