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13 protocols using anti vegfa

1

Western Blot Analysis of Protein Expression

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Proteins were obtained by RIPA lysis buffer (Beyotime, China) and the concentrations were assessed by BCA assay (Beyotime, China). After being separated by 10% SDS-PAGE, proteins were transformed onto polyvinylidene fluoride membranes (Millipore, Billerica, MA). Membranes were blocked with 5% skim milk for two hours and then incubated with the following primary antibodies overnight at 4 °C: anti-Atf4 (Abcam, 1:1000), anti-Vegfa (Proteintech, 1:1000), anti-iNOS (Abcam, 1:1000), anti-Arg1(Abcam, 1:1000), anti-β-actin (Proteintech, 1:1000). After three washes, the membranes were incubated with secondary antibodies for one hour at room temperature, and the blots were captured by Tanon 5200 luminous imaging system. The results were quantified using the Image J software.
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2

Comprehensive Protein Analysis Workflow

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Western blotting was performed as previously described,35 (link) using anti-CDK5, anti-FAK, anti-p-FAK (Ser732), anti-PAK1, anti-p-PAK1 (Thr212), anti-ERK5, anti-p-ERK5 (Thr218/Tyr220) (Abcam), anti-p-ERK5 (Thr732), anti-p35 (Cell Signaling Technology, Danvers, MA, USA; anti-p-ERK5 Thr732 was custom-made from CST), anti-c-fos, anti-c-jun (Bioworld Technology, Louis Park, MN, USA), anti-c-myc, anti-VEGFA and anti-MMP1 antibodies (Proteintech, Chicago, IL, USA). Loading control was used with a mouse anti-β-Actin monoclonal antibody (Proteintech).
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3

Immunohistochemical Analysis of Tumor Markers

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Tumor tissue was fixed with 4% formaldehyde at 37°C for 24 h, embedded in paraffin and sectioned into a thickness of 2-µm. Following dewaxing with xylene, hydration in alcohol with different concentrations, tissue incubation in hydrogen peroxide (3%) was performed to quench endogenous peroxidase and sodium citrate buffer (0.01 M, pH 6.0) was used to retrieve antigens at 95°C. Using 1% bovine serum albumin (Azer Scientific, Inc.), the slide blocking lasted for 30 min at room temperature. The sections were sequentially incubated with primary antibodies at 4°C overnight, including anti-Ki-67 (1:5,000; cat. no. 27309-1-AP;), anti-VEGF-A (cat. no. 19003-1-AP; 1:500; both from ProteinTech Group, Inc.), anti-MMP-9 (cat. no. 13667; 1:500; Cell Signaling Technology, Inc.). On the next day, slides were incubated with HRP-conjugated secondary antibodies (1:1,000; cat. no. 7074S; Cell Signaling Technology, Inc.) for 40 min at room temperature. After scanning IHC sections, images were captured using CaseViewer 2.2 (3DHISTECH Kft).
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4

Quantification and Western Blot Analysis

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Protein was extracted from the cells by using a lysis buffer containing protease inhibitor (KeyGen BioTech) and was quantified with a bicinchoninic acid kit (KeyGen BioTech). Thirty micrograms of protein extracts were separated using 10% sodium dodecyl sulphate - polyacrylamide gel electrophoresis (SDS-PAGE) gel before transferring to polyvinylidene difluoride membranes (Millipore, Billerica, MA, USA). After blocking with 5% nonfat milk for 1 h, the membranes were then incubated with primary antibodies at 4°C overnight: anti-VEGFA (1:1,000; Proteintech, Chicago, IL, USA), GAPDH (1:5,000; Proteintech), anti-VEGFR (1:1,000; Cell Signaling Technology, Beverly, MA, USA), anti-p-VEGFR2 (1:1,000; Cell Signaling Technology), and anti-p-Akt (1:1,000; Cell Signaling Technology). Next day, the membranes were incubated with secondary antibody for 1 h at room temperature. The protein bands were detected using an enhanced chemiluminescence reagent kit (KeyGen BioTech).
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5

Comprehensive Protein Expression Analysis

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Western blot was performed as previously described (35 (link)). Primary antibodies used were: anti-TNFAIP6 (1:1000, Proteintech, China), anti-TLR6 (1:1000, ABclonal, China), anti-FAS (1:3000, Proteintech, China), anti-CCL3 (1:1000, Proteintech, China), anti-ICAM-1 (1:3000, Proteintech, China), anti-CCL2 (1:3000, Proteintech, China), anti-CXCR4 (1:3000, Proteintech, China), anti-VEGFA (1:2000, Proteintech, China), anti-β-Tubulin (1:20000, Proteintech, China) and anti-GAPDH (1:2000, Servicebio, China).
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6

Western Blot Analysis of Glioma Signaling

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The glioma cells were lysed using RIPA buffer with Protease and Phosphatase inhibitor (Beyotime). The total protein concentration was examined using a BCA kit. Equal amounts of total protein (30 μg) were electrophoresed in 10%–12% SDS‐PAGE and electro‐transferred onto NC membrane (GE). After blocking with 5% non‐fat dry milk in TBST for 1 h at room temperature (RT), the membranes were incubated with primary antibodies at 4°C overnight. Then, the membranes were incubated with HRP‐labeled secondary antibodies (Proteintech) for 1 h at RT. An enhanced chemiluminescence reagent (Millipore) was used to detect protein expression value. The relative quantity of proteins was analyzed using the Image J software. The primary antibodies used are as follows: anti‐EZH2 (1:2000, #66476‐1‐Ig, Proteintech), anti‐VEGFA (1:1000, #66828‐1‐Ig, Proteintech), anti‐VEGFR2 (1:200, #sc‐6251, Santa‐Cruz Technology), anti‐PhosphoTyr1175‐VEGFR2 (1:1000, #2478, CST), anti‐AKT (1:1000, #9272, CST), anti‐ PhosphoThr308‐AKT (1:1000, #13038, CST), anti‐ERK1/2 (1:1000, #4695, CST), anti‐PhosphoThr202/Tyr204‐ERK1/2 (1:1000, #4370, CST), anti‐GAPDH (1:5000, #60004‐1‐Ig, Proteintech), and anti‐β‐tubulin (1:5000, #10094‐1‐AP, Proteintech).
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7

VEGFA Immunofluorescence Protocol

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The cells were fixed in 4% paraformaldehyde (PFA) in 1× PBS at room temperature for 20 minutes. The cells were first pre‐treated and then blocked in 1× PBS with 0.5% Triton X‐100 and 5% BSA for 1 hour. Next, the samples were incubated with anti‐VEGFA (1:200 dilutions, ProteinTech) overnight at 4°C, followed by incubation with secondary antibodies goat anti‐Rabbit Alexa 488 (1:200 dilutions, ZSGB‐BIO). The samples were then analysed with a laser confocal microscope (OLYMPUS IX83, UltraVIEW VoX) with a 640 nm pulse. The images were collected with the Volivity software containing Acquisition, Quantitation and Visualization modules.
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8

Western Blot Analysis of Protein Expression

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All cells were lysed in RIPA-Buffer (Beyotime Biotechnology, Shanghai, China) supplemented with protease and phosphatase inhibitors (Thermo Scientific, USA) on ice for 30 min, followed by centrifugation at 12,000 g for 15 min. Protein concentrations were calculated using the Pierce BCA protein assay kit (Thermo Scientific, USA). Equivalent amounts of protein samples (25 µg/lane) were separated on 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and subsequently transferred to polyvinylidene fluoride (PVDF) membranes. Membranes were blocked with 5% nonfat milk in Tris-buffered saline and 0.1% Tween 20 buffer and then incubated with primary antibody overnight at 4°C. Primary antibody including anti-VEGFA (Proteintech, MA5-13182), anti-ABCC1 (Abcam, ab91451), anti-MMP2 (Abcam, ab97779), anti-MMP9 (Abcam, ab38898), anti-Vimentin (Abcam, ab28151), anti-SNAIL (Cell Signaling Technology, #3879), GAPDH (Cell Signaling Technology, #5174), β-actin (ab179467). Membranes were incubated with goat anti-rabbit or anti-mouse HRP-conjugated secondary antibody (Beyotime Biotechnology, Shanghai, China) for 1 h at room temperature. Signal detection was performed using the ultrasensitive ECL plus Detection Reagent (Millipore, USA) and a ChemiDoc Touch Imaging System. The intensity of the bands was analyzed using the Quantity One software (Bio‐Rad, Hercules, CA, USA).
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9

Investigating ER Stress Pathways in Glioblastoma

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Antibodies and agents used in this study were as follows: anti-PDIA4 (Proteintech, Cat. No. #14,712–1-AP), anti-ATF6 (Proteintech, Cat. No. #24,169–1-AP), recombinant anti-XBP1 antibody (Abcam, Cat. No. #ab220783), anti-VEGFA (Proteintech, Cat. No. #19,003–1-AP), anti-Flag (Proteintech, Cat. No. 20543–1-AP), anti-HA (Proteintech, Cat. No. #66,006–2-Ig), anti-GAPDH (Proteintech, Cat. No. #10,494–1-AP), anti-HIF-1α (Proteintech, Cat. No. #20,960–1-AP), anti-β-Actin (Proteintech, Cat. No. #81,115–1-RR), anti-CD31 (Proteintech, Cat. No. 311265–1-AP), tunicamycin (Cat. No. #HY-A0098, MedChemExpress), temozolomide (Cat. No. HY-17364, MedChemExpress), human-VEGFA (Cat. No. HZ-1038, human VEGF-165 recombinant protein, Proteintech), and bevacizumab (Cat. No. #HY-P9906, MedChemExpress).
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10

Protein extraction and characterization of exosomes

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Protein in HUVECs was extracted with RIPA buffer containing PMSF (Solarbio, Beijing, China). The supernatant of the lysis and exosome derived from HCT116 and SW480 was quantified with a BCA kit. Then, more details are provided below [11 (link)]. The following antibodies were used: anti-CD9 (Abcam, ab263019); anti-CD63 (Abcam, ab134045); anti-TSG101 (Abcam, ab125011); anti-CD34 (Proteintech, 14,486–1-AP); anti-Integrin β1 (Proteintech, 12,594–1-AP); anti-VEGFA (Proteintech,19,003–1-AP); anti-PDK2 (Abcepta, AP7039b); anti-Akt (Abcam, ab179463); anti-p-Akt (Ser473); anti-GAPDH (Proteintech, 60,004–1-Ig). IF and IHC was performed as previously described [11 (link)]. IF was performed using anti-CD34 (Proteintech, 14,486–1-AP). Then, the image of IF was obtained using the LSM880 confocal microscope system (Zeiss, Jena, Germany). IHC was performed using anti-CD31 (Proteintech, 11,265–1-AP) and anti-CD34 (Proteintech, 14,486–1-AP). The images of IHC were acquired using a fluorescence microscope system (Olympus, Tokyo, Japan).
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