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14 protocols using sc100 digital camera

1

Quantifying Cell Populations via Microscopy

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DAB IHC and ISH images were captured using an Olympus BX53 light microscope fitted with an Olympus SC100 digital camera and CellSens 2.0 software (Olympus, Tokyo, Japan). Images were used for manual cell counting using ImageJ software (National Institutes of Health, Bethesda, MD, USA). Six images were captured per stained slide. When capturing images, areas with muscle and blood vessels were avoided. All positively and negatively stained cells within these images were counted and identified as either epithelial (crypt) or stromal cells. Cell were counted as positive if they had any level of staining (weak, moderate or strong) in the nucleus and/or cytoplasm. IF IHC-stained slides were visualized and imaged using an Olympus FV1200 biological confocal laser-scanning microscope (Olympus) and processed using CellSens 2.0 software (Olympus).
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2

Histopathological Analysis of Liver Samples

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Liver samples, were fixed in formalin, treated with a standard alcohol and xylol blend, embedded in paraffin, and sectioned into 5 mm thick sections. Haematoxylin and eosin (H and E) staining were applied to the sections in order to examine the histopathological alteration. Images were taken at the National Research Center’s pathology lab using an Olympus CX41 light microscope and a SC100 digital camera connected to a computer system.
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3

Multimodal Imaging Protocols for Research

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Either an SP8 confocal microscope (Leica), ImageXpress Micro 4 High Content Screening System (Molecular Devices) with an Andor SDK3 camera, CKX53 inverted microscope with an SC100 digital camera (Olympus), or a BX51 upright microscope (Olympus) with a PCO.Panda 4.2 digital camera were used for image acquisition. All images were taken using 16-bit cameras. Varying lens parameters and acquisition settings were used, as follows:
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4

Olympus Microscope Imaging Protocol

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Images of IHC-stained slides were captured using an Olympus BX53 light microscope and an Olympus SC100 digital camera (Olympus, Tokyo, Japan). IF-stained slides were visualized and imaged using an Olympus FV1200 biological confocal laser-scanning microscope (Olympus). All images were processed using cellSens 2.0 software (Olympus).
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5

Imaging Live Rat Cortical Neurons

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Live rat cortical neurons labeled with Neurofluor™ NeuO (FITC filter set: 475 ± 17/536 ± 20 nm, dichroic filter 506 nm) and Hoechst (DAPI filter set: 377 ± 25/447 ± 30 nm, dichroic filter 409 nm) were imaged using an ImageXpress Micro 4 High Content Screening System set at 25 and 204 ms exposure times respectively with a 20× air immersion lens (Ph1 S Plan Fluor ELWD ADM; NA 0.45). NeuroFluor™ NeuO has an excitation/emission spectrum of 470/555 nm. The in-built Lumencor Sola Light (SE 5-LCR-QB) was set to 100 “lumencor intensity” units in MetaXpress (v6.2.2) software for fluorophore excitation. Phase-contrast images (Fig. 3a–c and Supplementary Figs. 4b, 5, 7a) of live rat cortical neurons were taken with an Olympus CKX53 microscope with an SC100 digital camera and a 10× dry objective (CACHN10XIPC; NA 0.25).
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6

Microscopic Imaging of Stained Slides

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IHC-stained slides were viewed and imaged using an Olympus BX53 microscope and an Olympus SC100 digital camera and the cellSens 2.0 software (Olympus, Tokyo, Japan). IF-stained slides were viewed and imaged using an Olympus FV1200 biological confocal laser-scanning microscope, and images were processed with cellSens Dimension 1.11 software using 2D deconvolution algorithm (Olympus, Tokyo, Japan).
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7

Microscopy Imaging and Analysis

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Immunohistochemical-stained slides were viewed and imaged using an Olympus BX53 microscope fitted with an Olympus SC100 digital camera (Olympus, Tokyo, Japan), and processed with the cellSens 2.0 Software (Olympus). Immunofluorescence-stained slides were viewed and imaged using an Olympus FV1200 biological confocal laser-scanning microscope (Olympus) and processed with the cellSens Dimension 1.11 software.
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8

Microscopy Imaging of Stained Cells

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DAB and IF IHC-stained slides were viewed and imaged using an Olympus BX53 light microscope fitted with an Olympus SC100 digital camera (Olympus, Tokyo, Japan) and with an Olympus FV1200 confocal laser-scanning microscope and processed with CellSens Dimension 1.11 software using 2-dimensional deconvolution algorithm (Olympus), respectively. Images of the Oil Red O and Alizarin Red staining were captured using a Leica DMIL LED inverted light microscope with an attached Leica DCF290 HD camera and analyzed using Leica Application Suite software (Leica, Germany).
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9

Histological Examination of Liver and Kidney

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Aliquots of the tissues of the liver and kidneys were used and fixed for 1 week in formalin (10%) in phosphate-buffered normal saline. They were then washed for 2 h under running tap water and underwent dehydration in ethanol gradually, followed by embedding in paraffin wax. The sections were thereafter de-paraffinized with xylene and stained with hematoxylin and eosin. An examination was performed using an Olympus CX41 light microscope and SC100 digital camera, which was attached to a computer system.
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10

Immunohistochemical and Immunofluorescence Imaging

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Immunohistochemical-stained slides were viewed and imaged on an Olympus BX53 light microscope fitted with an Olympus SC100 digital camera, and processed with cellSens 2.0 software (Olympus, Tokyo, Japan). Immunofluorescence slides were viewed and imaged on an Olympus FV1200 confocal laser-scanning microscope (Olympus). All immunofluorescence images were processed with cellSens Dimension software (v1.11) using a 2D deconvolution algorithm (Olympus).
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